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Curis Inc

cris · NASDAQ Healthcare
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FY2007 Annual Report · Curis Inc
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c ur i s

Annual Report 2007

45 Moulton Street
Cambridge, ma 02138

tel: 617.503.6500
fax:  617.503.6501

www.curis.com

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Curis is a drug development company that 
is committed to leveraging its innovative 
signaling pathway drug technologies to seek 
to create new medicines, primarily for cancer. 
In expanding its drug development efforts in 
the fi eld of cancer through its targeted cancer 
drug development platform, Curis is building 
upon its previous experiences in targeting 
signaling pathways for the development of 
next generation targeted cancer therapies.

share holde r information

Curis, Inc. and Subsidiaries

off ice r s

Daniel R. Passeri

President and Chief Executive Offi cer

Michael P. Gray

Chief Operating Offi cer, Chief 
Financial Offi cer, Treasurer and Secretary

Changgeng Qian, Ph.D., M.D.

Vice President, Discovery 
and Preclinical Development

Mark W. Noel

Vice President, Technology Management 
and Business Development

market information

Our common stock has traded on
the nasdaq Global Market since
August 1, 2000. Our trading symbol is
“cris.” There were 302 shareholders
of record as of March 12, 2008. The
following table sets forth, for the fi scal
periods indicated, the high and low
sales prices per share of our common
stock as reported on the nasdaq
Global Market:

fy 20 07 
1st Quarter 
2nd Quarter 
3rd Quarter 
4th Quarter 

fy 20 06 
1st Quarter 
2nd Quarter 
3rd Quarter 
4th Quarter 

  high 
$  1.72 
$  2.35 
$  1.31 
$  1.20 

  low

$   1.15
$  1.21
$  0.93
$  0.86 

  high 

  low

$  4.10 
$  2.43 
$  1.98 
$  1.95 

$  2.28
$  1.21
$  0.91
$  1.11

We have never declared or paid any
cash dividends on our common stock
and we do not anticipate paying cash
dividends in the foreseeable future.

corporate headquarte r s

Curis, Inc.
45 Moulton Street
Cambridge, ma 02138
p 617.503.650 0

f 617.503.6501

transfe r age nt
BNY Mellon Shareowner Services
P.O. Box 358015
Pittsburgh, pa 15252-8015
p 877.810.2248
www.bnymellon.com/shareowner/isd 

board of director s

Susan B. Bayh

Director, Dyax Corporation, 
Dendreon Corporation, Emmis 
Communications, Inc., 
Nastech Pharmaceutical 
Company, and Wellpoint, Inc. 

Joseph M. Davie, Ph.D., M.D.

Director, CV Therapeutics Corporation 
and Targeted Genetics, Inc. 

Martyn D. Greenacre

Chairman of the Board, 
BMP Sunstone and Life Mist, l.l.c.; 
Director, Cephalon, Inc., Acusphere, Inc.
and Orchestra Therapeutics, Inc. 

Kenneth I. Kaitin, Ph.D.

Director of the Tufts Center for the 
Study of Drug Development; Associate 
Professor of Medicine at Tufts University 
School of Medicine

James R. McNab, Jr.

Chairman and Chief Executive Offi cer,
Palmetto Pharmaceuticals, Inc., 
Director, Argolyn Biosciences, Inc.

Daniel R. Passeri

President and Chief Executive Offi cer, 
Curis, Inc.

James R. Tobin

President and Chief Executive Offi cer,
Boston Scientifi c Corporation

inde pe nde nt accountants
PricewaterhouseCoopers llp
125 High Street
Boston, ma 02110
p 617.530.5000
www.pwcglobal.com

legal counse l

Wilmer Cutler Pickering 
Hale and Dorr llp
60 State Street
Boston, ma 02109
p 617.526.6000
www.wilmerhale.com

annual me et ing

The annual meeting of shareholders
will be held at 10:00 a.m. on 
June 3, 2008, at the offi ces of 
Wilmer Cutler Pickering 
Hale and Dorr llp
60 State Street, Boston, ma 02109

sec f orm 10-k
A copy of our 2007 annual
report on Form 10-k, without exhibits,
is available without charge upon
written request to:

inve stor re lat ions

Curis, Inc.
45 Moulton Street
Cambridge, ma 02138
info@curis.com

cautionary note

This Annual Report contains forward-looking statements within the meaning of the Private Securities Litigation Reform Act of 1995, including statements about Curis’ 
fi nancial results and expected cash life, the potential effectiveness of its technologies under development and other information pertaining to its various research and 
development programs, strategies, plans and prospects. Such statements may contain the words “believes”, “expects”, “anticipates”, “plans”, “seeks”, “estimates” or similar 
expressions. These forward looking statements are not guarantees of future performance and involve risks and uncertainties that may cause Curis’ actual results to be materially 
different from those indicated by such forward-looking statements. Actual results can be affected by a number of important factors including, among other things: adverse 
results in Curis’ and its strategic collaborators’ product development programs; diffi culties or delays in obtaining or maintaining required regulatory approvals; Curis’ ability to 
obtain or maintain required patent and other proprietary intellectual property protection; changes in or Curis’ inability to execute its business strategy; the risk that Curis does 
not obtain required additional funding ; unplanned cash requirements; risks relating to Curis’ ability to enter into and maintain important strategic collaborations, including its 
ability to maintain its current collaboration agreements with Genentech and; competitive risks; and other risk factors identifi ed in Curis’ most recent Annual Report on Form 
10-k, Quarterly Report on Form 10-q and any subsequent reports fi led with the Securities and Exchange Commission. In addition, any forward-looking statements represent 
Curis’ views only as of the date of this Annual Report and should not be relied upon as representing its views as of any subsequent date. Curis disclaims any intention or 
obligation to update any of the forward-looking statements, whether as a result of new information, future events or otherwise.

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Dear Shareholders,

2007 was a pivotal year for Curis in which we 
continued to focus our resources on the development 
of the next generation of targeted small molecule 
cancer drugs. 

Our most advanced drug candidate is gdc-0449, an 
orally-available small molecule Hedgehog antagonist 
that is under development in collaboration with 
Genentech. This molecule successfully met the 
primary objectives of a Phase i dose escalation trial 
for refractory solid tumors in 2007 and, based on 
the results of the Phase i trial, Genentech initiated a 
Phase i expansion cohort in October of 2007 for 
the continued study of gdc-0449 in advanced basal 
cell carcinoma patients. We are pleased that gdc-
0449 exhibited promising signs of effi cacy in both the 
Phase i trial and related expansion cohort, with Ge-
nentech observing both complete and partial respons-
es in several advanced basal cell carcinoma patients. 

We are also pleased to report that Genentech has 
recently announced plans to initiate three Phase ii 
trials of gdc-0449 in 2008. These Phase ii trials 
include a recently initiated Phase ii trial in metastatic 
colorectal cancer as well as Phase ii trials in advanced 
basal cell carcinoma and in an undisclosed advanced 
tumor of epithelial origin that are both expected to 
begin in the second half of 2008. We believe that the 
advancement of a targeted cancer drug candidate to 
the second phase of clinical development is a signifi -
cant corporate milestone for Curis.

Genentech’s initiation of the Phase i advanced basal 
cell carcinoma expansion cohort and the beginning of 
the Phase ii metastatic colorectal cancer trial resulted 
in aggregate cash payments to us of $6 million dollars. 
We are also eligible to receive an additional $3 million 
cash payment from Genentech upon its initiation of 
Phase ii testing of the undisclosed advanced epithelial 
solid tumor and would also receive additional pay-
ments upon the achievement of further development 
milestones. These cash payments are an important 
source of nondilutive fi nancing for us as we continue 
to evolve as a drug development company.

We are directing these funds and the majority of 
our internal resources to advancing our proprietary 
targeted cancer programs. These programs include 
several classes of small molecule single and multi-
targeted drug candidates that are designed to inhibit 
one or more validated cancer targets, including egfr 
and her2, hdac, hsp90, cdk, vegfr, c-met and 
bcr-abl. We have made the strategic decision to 

focus on validated targets rather than on novel target 
discovery since we believe that by focusing on vali-
dated targets we have a greater potential to maximize 
value for our shareholders. We believe that focusing 
on validated targets may allow us to build a broader 
pipeline of proprietary drug candidates as compared 
to novel target discovery by potentially reducing the 
time, capital and technology risk associated with de-
veloping drug candidates.

A majority of our cancer programs are multi-targeted 
drug candidates that include an hdac inhibitory 
component. We believe that the addition of hdac in-
hibition to other targeted kinase inhibitors as a single 
agent may prove to be a signifi cant advancement over 
existing kinase inhibitors, which generally continue to 
face problems of rapid emergence of drug resistance 
and low response rates in cancer patient popula-
tions. There is a signifi cant amount of published data 
suggesting that hdac inhibition, a type of epigenetic 
modulation of dna expression, may enhance the ef-
fects of targeted therapy, particularly through synergis-
tic activity with receptor tyrosine kinase targets, such 
as egfr and her2. “Epigenetic” refers to specifi c cel-
lular machinery, collectively called the “epigenome,” 
whose function is to switch multiple genes on or 
off, including those that mediate signaling pathways 
underlying certain types of drug resistance. Based 
on accumulated published and internally generated 
research, our scientists are designing multi-targeted 
inhibitors such as cudc-101 using rational, synergistic 
combinations designed as single small molecule drug 
candidates that seek to suppress not only primary 
cancer pathways through receptor tyrosine kinase 
targeting, but also achieve blockade of the alternative 
resistance pathways through hdac inhibition.

In March 2007, we selected cudc-101 as the fi rst 
development candidate from our targeted cancer 
programs. We believe that cudc-101 is the fi rst-in-
class multi-targeted inhibitor designed to inhibit egfr, 
her2 and hdac. We have generated strong preclinical 
effi cacy data in xenograft models using cell lines rep-
resenting a broad range of cancers, including data that 
cudc-101 demonstrates effi cacy in preclinical xeno-
graft models of cancer cell lines that are unresponsive 
to existing egfr, egfr and her2, or hdac inhibitors. 

It is our belief that a multi-targeted single agent drug 
candidate such as cudc-101 may be advantageous 
over the administration of multiple drugs for several 
reasons. We believe that our approach may increase 
the likelihood that a single drug will simultaneously 
provide multiple anti-cancer activities to the same 
cancer cell at the same time for maximum synergistic 

1

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studies. We believe that this candidate has the potential 
to be a cross-platform best-in-class drug that may be 
of use not only in oncology, but neurological disease 
as well. 

With gdc-0449’s recent entry into Phase ii clinical 
testing and our expectation that cudc-101 will 
progress into Phase i trials, we expect 2008 to be an 
exciting year from a clinical standpoint. We also intend 
to continue to develop our targeted small molecule 
cancer drug programs and we expect to select an 
hsp90 inhibitor as our next development candidate 
during the second quarter of 2008. We also plan to 
name an hdac-based multi-targeted development 
candidate in early 2009. In addition, we are seeking to 
enter into a collaboration during 2008 for one or 
more of targeted cancer drug programs. We believe 
that 2007 has successfully positioned us to meet our 
2008 goals, and I remain optimistic for the continued 
development of Curis as a drug development com-
pany with a goal of providing the next generation of 
targeted cancer therapeutics. 

I thank our shareholders for their continued 
support, our Board of Directors and our Clinical 
and Scientifi c Advisory Boards for their expert 
guidance, and our employees for their continued 
hard work and dedication.

Sincerely,

Daniel R. Passeri
President and Chief Executive Offi cer
Curis, Inc.

2

effect whereas such coordinated delivery and timing 
may be diffi cult to achieve with multiple agents that 
each behave differently once they enter the body. For 
example, two or more drugs with different mecha-
nisms and different rates of metabolic breakdown can 
potentially be very diffi cult for a treating physician to 
control exposure for any combinatory benefi t. In 
addition, the administration of multiple drugs may 
also face problems of additive toxicity. We also believe 
that a single drug has additional potential advantages 
of lower cost and greater convenience of administra-
tion when compared with the administration of sepa-
rate drugs that are designed to inhibit the same targets.

To help guide Curis towards clinical development, 
in 2007 we established a clinical advisory board 
consisting of several outstanding oncologists including 
Kenneth J. Pienta, m.d., Director of the Translational 
Medicine Committee of the SouthWest Oncology 
Group; Samir E. Witta, m.d., ph.d., Clinical Assistant 
Professor at University of Colorado; and Philip 
A. Philip, m.d, ph.d., Clinical Professor of Oncology 
at the Barbara Ann Karmanos Cancer Institute. Our 
development team is also in consultation with James. 
D. Griffi n, m.d., Director of the Leukemia Program 
and Chair of the Department of Medical Oncology 
at the Dana Farber Cancer Institute. We also 
continue to receive advisement from our scientifi c 
advisory board (sab) which includes Dr. Pienta in 
addition to Joseph M. Davie, m.d. ph.d., our sab 
Chairman; George F. Vande Woude, ph.d., Director 
of the Van Andel Research Institute; and Stuart 
A. Aaronson, m.d., Chairman, Department of Onco-
logical Sciences, Mount Sinai School of Medicine.

In order to continue advancing cudc-101 and our 
other earlier stage targeted cancer drug candidates, we 
entered into strategic relationships with third-party 
providers in Shanghai and Beijing to provide ex-
panded capacity in medicinal chemistry and preclini-
cal research. These relationships have proven to be 
cost-effective and productive, allowing us to continue 
advancing multiple drug candidates at a rapid pace 
while remaining fi scally prudent. 

In addition to cudc-101, we are utilizing our global 
resources to continue the preclinical development of 
several multi-targeted inhibitors that were designed 
to promote pathway synergies between hdac inhibi-
tion and other validated pathways. Moreover, we have 
single-targeted inhibitors in preclinical development 
that we believe have the potential to be best-in-class. 
For example, we are developing an orally available 
hsp90 inhibitor that penetrates the brain in preclinical 

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f orm - 10 k

Curis 2007

UNITED STATES
SECURITIES AND EXCHANGE COMMISSION
Washington, D.C. 20549

(Mark one)
È ANNUAL REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES

FORM 10-K

EXCHANGE ACT OF 1934
For the fiscal year ended December 31, 2007

OR
‘ TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES

EXCHANGE ACT OF 1934

Commission File Number 000-30347

CURIS, INC.

(Exact Name of Registrant as Specified in Its Charter)

DELAWARE
(State or other jurisdiction of
incorporation or organization)

04-3505116
(I.R.S. Employer
Identification No.)

45 Moulton Street
Cambridge, Massachusetts 02138
(Address of principal executive offices) (Zip Code)
617-503-6500
(Registrant’s telephone number, including area code)

Securities registered pursuant to Section 12(b) of the Act:

Title of Each Class
Common Stock, $0.01 par value per share

Name of Each Exchange on Which Registered
The NASDAQ Stock Market

Securities registered pursuant to Section 12(g) of the Act:
None

Indicate by check mark if the registrant

Act. Yes ‘ No È

is a well-known seasoned issuer, as defined in Rule 405 of the Securities

Indicate by check mark if the registrant is not required to file reports pursuant to Section 13 or Section 15(d) of the

Act. Yes ‘ No È

Indicate by check mark whether the registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the
Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file
such reports), and (2) has been subject to such filing requirements for the past 90 days. Yes È No ‘

Indicate by check mark if disclosure of delinquent filers pursuant to Item 405 of Regulation S-K is not contained herein, and
will not be contained, to the best of registrant’s knowledge, in definitive proxy or information statements incorporated by reference
in Part III of this Form 10-K or any amendment to this Form 10-K. ‘

Indicate by check mark whether the registrant is a large accelerated filer, an accelerated filer, a non-accelerated filer, or a
smaller reporting company. See definitions of “large accelerated filer,” “accelerated filer” and “smaller reporting company” in
Rule 12b-2 of the Exchange Act. (Check one):
Large accelerated filer ‘
Non-accelerated filer ‘

Accelerated filer È
Smaller reporting company È

Indicate by check mark whether the registrant is a shell company (as defined in Rule 12b-2 of the Act). Yes ‘ No È
The aggregate market value of the registrant’s common stock held by non-affiliates of the registrant (without admitting that
any person whose shares are not included in such calculation is an affiliate) based on the last reported sale price of the common
stock on June 29, 2007 (the last trading day of the registrant’s second fiscal quarter of 2007) was approximately $51,756,000.

As of March 12, 2008, there were 63,241,086 shares of the registrant’s common stock outstanding.

DOCUMENTS INCORPORATED BY REFERENCE

Specified portions of the registrant’s proxy statement for the annual meeting of stockholders scheduled to be held on June 3,
2008, which are to be filed with the Commission not later than 120 days after the close of the Registrant’s fiscal year ended
December 31, 2007 pursuant to Regulation 14A, have been incorporated by reference in Item 5 of Part II and Items 10-14 of Part
III of this Annual Report on Form 10-K.

CURIS, INC.

TABLE OF CONTENTS

Form 10-K

PART I

ITEM 1.

BUSINESS . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

ITEM 2.

PROPERTIES . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

ITEM 3.

LEGAL PROCEEDINGS . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

ITEM 4.

SUBMISSION OF MATTERS TO A VOTE OF SECURITY HOLDERS . . . . . . . . . . . . . . . . .

PART II

ITEM 5. MARKET FOR REGISTRANT’S COMMON EQUITY, RELATED STOCKHOLDERS

MATTERS AND ISSUER PURCHASES OF EQUITY SECURITIES . . . . . . . . . . . . . . . . . . .

ITEM 6.

SELECTED FINANCIAL DATA . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

ITEM 7. MANAGEMENT’S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND

RESULTS OF OPERATIONS . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

ITEM 8.

FINANCIAL STATEMENTS AND SUPPLEMENTARY DATA . . . . . . . . . . . . . . . . . . . . . . .

ITEM 9.

CHANGES IN AND DISAGREEMENTS WITH ACCOUNTANTS ON ACCOUNTING
AND FINANCIAL DISCLOSURE . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

PART III

ITEM 10. DIRECTORS, EXECUTIVE OFFICERS AND CORPORATE GOVERNANCE . . . . . . . . . . .

ITEM 11. EXECUTIVE COMPENSATION . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

ITEM 12.

SECURITY OWNERSHIP OF CERTAIN BENEFICIAL OWNERS AND MANAGEMENT
AND RELATED STOCKHOLDER MATTERS . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

ITEM 13. CERTAIN RELATIONSHIPS AND RELATED TRANSACTIONS, AND DIRECTOR

INDEPENDENCE . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

ITEM 14.

PRINCIPAL ACCOUNTANT FEES AND SERVICES . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

ITEM 15. EXHIBITS AND FINANCIAL STATEMENT SCHEDULES . . . . . . . . . . . . . . . . . . . . . . . . .

SIGNATURES . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

PART IV

1

33

33

34

36

38

39

60

102

103

103

103

103

103

104

105

PART I

This annual report on Form 10-K contains forward-looking statements that involve risks and uncertainties,
as well as assumptions that, if they never materialize or prove incorrect, could cause Curis’ financial, operating
and business results to differ materially from those expressed or implied by such forward-looking statements. All
statements other than statements of historical
fact are statements that could be deemed forward-looking
statements, including any expectations of revenue, expenses, earnings or losses from operations, or other
financial items; any statements of the plans, strategies and objectives of management for future operations; any
statements concerning product research, development and commercialization timelines; any statements of
expectation or belief; and any statements of assumptions underlying any of the foregoing. The risks, uncertainties
and assumptions referred to above include risks that are described in “Item 1A-Risk Factors” and elsewhere in
this annual report and that are otherwise described from time to time in our Securities and Exchange
Commission reports filed after this report.

The forward-looking statements included in this annual report represent our estimates as of the date of this
annual report. We specifically disclaim any obligation to update these forward-looking statements in the future.
These forward-looking statements should not be relied upon as representing our estimates or views as of any
date subsequent to the date of this annual report.

ITEM 1.

BUSINESS

Overview

We are a drug discovery and development company that is committed to leveraging our innovative signaling
pathway drug technologies in seeking to create new medicines, primarily for cancer. In expanding our drug
development efforts in the field of cancer through our targeted cancer drug development platform, we are
building upon our past experiences in targeting signaling pathways in the areas of cancer, neurological disease
and cardiovascular disease.

Signaling pathways are the means by which cells exchange instructional messages that regulate specific
biological functions. Healthy, normal cells require a balanced network of signaling pathways that govern daily
cell function, including proliferation, metabolism, and ordinary cell death. Genetic, environmental and other
factors can cause activation or repression of these signaling pathways, which can possibly lead to complex
diseases such as cancer. In cancer, such abnormally regulated signaling pathways are believed to be used by the
diseased cells to enhance their establishment, growth and metastasis. Our product development approach consists
of generating small molecules to target one or more of the components of such abnormally regulated signaling
pathway network to provide therapeutic effect.

Our cancer programs include a Hedgehog antagonist program for which the lead molecule, GDC-0449, is in
phase I clinical testing under collaboration with Genentech. Genentech has stated that it plans to initiate three
phase II clinical trials of GDC-0449 in 2008. Assuming that Genentech successfully initiates phase II trials as
planned, we believe that GDC-0449 would be the first Hedgehog antagonist to advance to phase II clinical
testing. Moreover, we have substantial intellectual property rights in the Hedgehog signaling pathway.

We are applying our signaling pathway-based preclinical drug development experience to begin developing
cancer drug candidates to target other biological signaling pathways. Our targeted cancer drug development
platform primarily consists of several proprietary cancer drug programs that target multiple signaling pathways
other than the Hedgehog signaling pathway. However, unlike the Hedgehog pathway, a majority of these targeted
pathways have been clinically validated by others in various cancer indications. By directing our efforts toward
validated targets, we believe that we can expedite the drug development process by taking advantage of the
accumulated scientific knowledge base relating to these targets and the molecules that have been developed to act
on them.

1

In addition, many of the preclinical drug candidates in our targeted cancer platform are designed to inhibit
more than one of these validated cancer targets. We believe that this approach of targeting multiple nodes in
various signaling pathway networks may provide for a better therapeutic effect than many of the targeted cancer
drugs currently marketed or in development.

Recent Developments

In March 2008, Genentech provided an update on its Phase II clinical trial plans for GDC-0449. Genentech
stated that it plans to initiate three Phase II clinical trials of GDC-0449 in 2008, which include a trial in
metastatic colorectal cancer during the first quarter of 2008 and trials in advanced basal cell carcinoma and in an
undisclosed advanced solid tumor of epithelial origin during the second half of 2008.

Genentech also announced that it has seen partial responses in advanced basal cell carcinoma tumors in the
ongoing Phase I clinical trial of GDC-0449. Genentech has indicated that it will present more comprehensive
Phase I data at an upcoming scientific conference.

On March 10, 2008, we announced that Wyeth Pharmaceuticals has decided that it will no longer pursue its
development efforts on our Hedgehog agonist program and will terminate its January 2004 collaboration
agreement with us. Pursuant to the collaboration agreement, we had licensed our Hedgehog protein and novel
small molecule Hedgehog pathway agonists to Wyeth. Wyeth paid us an up-front license fee and provided
research funding through February 2008. Research efforts under the collaboration focused on the preclinical
development of small molecule and protein Hedgehog agonists, primarily for stroke and cardiovascular
indications. Pursuant to the agreement, the collaboration will terminate on May 6, 2008. We intend to pursue
other opportunities to enter into a new collaboration or licensing relationship with a third party relating to this
technology.

Product Development Programs

We are developing drug product candidates primarily to treat cancer. These product development initiatives,
described in the chart below, are being pursued using our internal resources or through collaboration with
Genentech. We believe that Genentech is able to dedicate significant additional resources and clinical
development expertise to our programs under collaboration. In addition, these collaborations provide us with
potential future contingent cash payments upon the achievement of development and regulatory objectives and
royalties on future product sales, if any. Our product development initiatives are derived primarily from our
substantial intellectual property portfolio in key signaling pathways, including the Hedgehog signaling pathway
and certain other cancer signaling pathways.

The table below summarizes our current research and development programs,

including the current

development status of each program.

Product Candidate

Primary Indication

Collaborator/Licensee

Status

Hedgehog systemic antagonist

- GDC-0449 (small molecule)
- Small molecule and antibody

Targeted cancer drug development platform
- CUDC-101 (HDAC, EGFR, Her2

inhibitor)

- Other targeted cancer programs

Cancer
Cancer

Cancer

Cancer

Genentech
Genentech

Phase I expansion cohort
Preclinical

Internal development

Development candidate

Internal development

Preclinical

Hedgehog protein agonist (1)

Stroke and cardiovascular

disease

(1)

(1)

(1) On March 7, 2008, Wyeth provided us with written notice that it intends to terminate this collaboration
agreement effective May 6, 2008. On the termination date, the licenses granted by us to Wyeth terminate
and we intend to pursue other collaboration or licensing opportunities for this program.

2

In the chart above, “Phase I expansion cohort” means that our collaborator is currently treating human
patients in an expanded Phase I clinical trial, the principal purpose of which is to evaluate the safety and
biological activity of the compound being tested in a specific solid tumor type. “Development candidate” means
that from our testing in several preclinical models of human disease of various compounds from a particular
compound class, we have selected a single lead candidate for potential future clinical development and are
seeking to complete the relevant safety, toxicology, and other data required to submit an investigational new
drug, or IND, application with the FDA seeking to commence a Phase I clinical trial. “Preclinical” means we are
seeking to obtain evidence of therapeutic efficacy in preclinical models of human disease of one or more
compounds within a particular class of drug candidates.

Since our inception in 2000, substantially all of our revenues have been derived from collaborations and
other agreements with third parties. For the year ended December 31, 2007, our current collaborator, Genentech,
and our former collaborators, Wyeth and Procter & Gamble, accounted for substantially all of our revenue, as
follows: Genentech, $12,408,000, or 76%; Wyeth, $1,968,000, or 12%; and Procter & Gamble, $1,878,000, or
11%.

Hedgehog Systemic Antagonist Programs

Our Hedgehog antagonist technologies are being developed under a June 2003 collaboration agreement with
Genentech. Genentech is a biotechnology company with broad expertise in the development of cancer
therapeutics.

The Hedgehog signaling pathway controls the development and growth of many kinds of tissues in the body
by directly promoting cell division in specific cell types, and by activating other secondary signaling pathways
that control the synthesis of growth factors and angiogenic (blood vessel-forming) factors.

In recent years, it has been widely published that abnormal Hedgehog signaling may contribute to the
growth of certain cancers, including basal cell carcinoma, breast, colorectal, esophageal, pancreatic, prostrate and
small cell lung cancers, among others. Our preclinical evidence suggests that Hedgehog protein produced by
tumor cells may signal adjacent stromal cells within the tumor environment to produce various growth and
angiogenic factors that can enhance tumor maintenance and growth. Systemic administration of our Hedgehog
signaling pathway inhibitors has been shown to slow or halt the progression of various types of tumors in our
preclinical models of cancer. We believe that our Hedgehog pathway antagonists selectively target fundamental
mechanisms involved in the maintenance and progression of tumor growth and, as such, may represent a new
generation of cancer therapeutics.

Small Molecule Hedgehog Antagonist Program

In January 2007, Genentech began a phase I clinical trial of GDC-0449, a first-in-class systemically
administered small molecule Hedgehog antagonist drug candidate, in patients with locally advanced or metastatic
cancers that are refractory to standard therapy or for which no standard therapies exist. The primary objectives of
this phase I trial are to evaluate the safety and tolerability of escalating doses of GDC-0449, primarily to
establish the maximum tolerated dose and dose limiting toxicities and to characterize its pharmacokinetic and
pharmacodynamic properties. In October 2007, Genentech notified us that these initial objectives of the phase I
clinical trial were achieved and that Genentech had initiated a Phase I clinical trial expansion cohort to enroll
additional patients with advanced basal cell carcinoma to assess preliminary signs of biological activity as well as
to continue the accumulation of phase I safety data.

In addition to meeting the primary objectives of the phase I clinical trial, Genentech reported regression of
an established metastatic basal cell tumor in this trial. Genentech also stated that GDC-0449 appears to remain in
the body long enough to adequately expose the tumor to the drug compound. We are encouraged by the early

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evidence of clinical activity with this molecule, which could potentially represent a way to block Hedgehog
signaling in those cancers utilizing the Hedgehog pathway. Genentech has indicated that it expects to present
more comprehensive phase I data at an upcoming scientific conference.

In March 2008, Genentech provided an update on its Phase II clinical trial plans for GDC-0449. Genentech
stated that it plans to initiate three Phase II clinical trials of GDC-0449 in 2008, which include a trial in
metastatic colorectal cancer during the first quarter of 2008 and trials in advanced basal cell carcinoma and in an
undisclosed advanced solid tumor of epithelial origin during the second half of 2008.

Antibody Hedgehog Antagonist Program

Genentech is also conducting preclinical research on an antibody antagonist of the Hedgehog signaling
pathway. We expect to provide further updates on this program only if Genentech selects a development
candidate from this program. We can not predict whether Genentech will pursue the further development of
Hedgehog antibody antagonists.

Under the terms of the June 2003 agreement with Genentech, we granted Genentech an exclusive, royalty-
bearing license, with the right to sublicense, make, use, sell and import small molecule and antibody inhibitors of
the Hedgehog signaling pathway for applications in cancer therapy. We had responsibilities to perform certain
funded preclinical research activities and, from January 2005 through August 2006, co-funded clinical
development costs for certain products. Genentech has primary responsibility for clinical development,
regulatory affairs, manufacturing and supply, formulation and sales and marketing.

Pursuant to the collaboration agreement, Genentech made up-front payments of $8,500,000, which consisted
of a $3,509,000 non-refundable license fee payment and a payment of $4,991,000 in exchange for 1,323,835
shares of our common stock. Genentech also made license maintenance fee payments totaling $4,000,000 over
the first two years of the collaboration. We have entered into three amendments to the June 2003 collaboration
agreement. Pursuant to the amendments, Genentech increased its funded research commitment and extended its
funding obligation through December 2006. As part of these amendments, Genentech provided us with
$5,846,000 in incremental research funding over the period from December 2004 to December 2006. All
research funding ended in December 2006, and we do not expect to receive additional future research funding
from Genentech or incur any material research costs related to this program. In October 2006, Genentech
submitted an IND application for which we received a $3,000,000 cash payment. Assuming that Genentech
proceeds with three Phase II clinical trials in 2008 as planned, in connection with the treatment of the first patient
in the Phase II colorectal cancer trial, we have the right to receive a $3,000,000 cash payment from Genentech.
We also have the right to receive an additional $3,000,000 cash payment upon initiation of the Phase II testing of
the undisclosed advanced epithelial solid tumor. We have already received a $3,000,000 cash payment for the
initiation of Phase II testing in advanced basal cell carcinoma. Genentech had determined that it was obligated to
make this payment since the Phase I clinical trial expansion cohort in advanced basal cell carcinoma, which was
initiated in October 2007, satisfied the criteria for a Phase II clinical trial under the parties’ collaboration
agreement. We are eligible to receive additional payments upon the achievement of further development
milestones in this indication. In addition to these payments, we will be eligible to receive cash payments from
Genentech only upon the achievement of additional specified clinical development objectives as well as royalties
on product sales if any Hedgehog systemic antagonist products are successfully developed and commercialized.

Unless terminated earlier,

the agreement will expire six months after the later of the expiration of
Genentech’s obligation to pay royalties to us under the agreement or such time as no activities have occurred
under the agreement for a period of twelve months. The agreement may be terminated earlier, by either party for
cause, upon sixty days prior written notice. In addition, Genentech may terminate the agreement, either in whole
or in part, without cause, upon six months prior written notice. In the event of any termination where specific

4

license grants survive, we will continue to receive clinical development and drug approval milestones and
royalties on product sales for such licensed compound.

If we terminate the agreement for cause or Genentech terminates the agreement without cause, all licenses
granted to Genentech automatically terminate and revert to us. In addition, Genentech has agreed that it will no
longer conduct any development or commercialization activities on any compounds identified during the course
of the agreement for so long as such compounds continue to be covered by valid patent claims.

As a result of our licensing agreements with various universities, we are obligated to make payments to
these university licensors when we receive certain payments from Genentech. To date, we have made an
aggregate of $300,000 in such payments.

Targeted Cancer Drug Development Platform

Over the past several years, targeted cancer drugs have been considered among the most promising cancer
treatments for obtaining better
therapeutic effect with less toxicity when compared with traditional
chemotherapy, which, in addition to attacking cancerous cells, also tends to attack a broad range of healthy cells.
A large body of published data shows cancers to have multiple, intersecting signaling pathways that support
survival, growth, and invasion. Targeting only one or two of these pathways with single-targeted agents has
generally only led to modest improvements to existing standards-of-care and most cancer patients with solid
tumors do not respond in a clinically meaningful manner. Identifying the correct combination of critical targets
within the network of cancer cell signaling pathways wherein simultaneous blockade could provide a major
improvement in outcomes for cancer patients is an area of intense research.

In 2006, we utilized medicinal chemistry and biological expertise to initiate our proprietary targeted cancer
drug development platform. This platform focuses on the development of single agent drug candidates targeting
one or more molecular components within the signaling pathways associated with certain cancers. These
programs are primarily focused on developing a number of proprietary, small molecule, single agent, multi-
targeted inhibitor drug compounds, including CUDC-101, the first drug candidate selected as a development
candidate. Each proprietary compound is being designed to inhibit validated cancer targets, including the
epidermal growth factor receptor (EGFR), vascular endothelial growth factor receptor (VEGFR), heat shock
protein 90 (Hsp90), epidermal growth factor 2 (Her2) and in combination with inhibition of histone deacetylase,
or HDAC, which is a validated non-kinase cancer target. We are also seeking to use this platform to develop
proprietary single agent, single target drug candidates for cancer indications, including an Hsp90 inhibitor.

HDAC inhibition is a core component in each of our multi-targeted inhibitors. We believe that HDAC
inhibition is a very promising non-kinase target for cancer therapy. There is substantial preclinical evidence of
synergistic induction of cancer cell death when HDAC inhibitors are combined with a diverse range of other
targeted therapies or standard chemotherapeutic agents, demonstrating that HDAC inhibition may be more
broadly effective in the treatment of cancer when integrated with other inhibitory activities. Currently there is
one FDA-approved HDAC inhibitor and several other HDAC-targeted drug candidates in clinical trials for
cancer.

In furtherance of the development of our targeted cancer drug development platform, since May 2006, we
have outsourced certain medicinal chemistry functions to a leading provider in Shanghai, China. More recently,
we have engaged another provider to perform certain biological functions in Beijing, China. We have developed
these relationships with Chinese providers to support our U.S. operations and we are currently engaging a total of
27 chemists and 6 biologists in China. We believe that these relationships have been important to our efforts to
create a broad portfolio of proprietary cancer drugs.

We have filed a number of patents including a broad omnibus patent application that covers the drug design
concept that is the basis for the targeted cancer drug development platform as well as numerous species filings

5

relating to specific classes of compounds which we believe will constitute novel compositions from a
patentability standpoint. We expect that we will continue to file additional patent applications covering new
compositions in the future.

We are concurrently engaged in collaboration discussions with several companies and remain optimistic that
we may consummate a collaboration for one of our targeted inhibitors during 2008, although we cannot assure
that such a collaboration will occur in the time frame expected, if at all. When evaluating potential collaborative
opportunities, we are seeking a corporate collaboration that will provide us with the opportunity for significant
involvement into the early stages of human clinical testing.

CUDC-101

CUDC-101 is our lead multi-target inhibitor drug candidate under development. CUDC-101 is being
designed as a single agent to inhibit HDAC, EGFR and Her2, three validated cancer targets. EGFR and Her2 are
cell receptors involved in growth and survival. Overexpression of EGFR and Her2 are known to play a primary
role in the uncontrolled proliferation of various tumor cell types including breast and lung. HDACs are enzymes
that are involved in turning genes on or off by controlling access to a cell’s DNA, which is referred to as
epigenetic regulation. We believe that CUDC-101 is the first-in-class compound designed to simultaneously
inhibit HDAC, EGFR and Her2. Currently marketed EGFR and/or Her2 inhibitors have had limited efficacy in a
small percentage of the respective patient populations. This may be due in part to factors other than EGFR and
Her2 that independently drive dysfunctional cell signaling and therefore potentially contribute to cancer cell
growth. We have demonstrated in in vitro preclinical data that the administration of CUDC-101, as a single
agent, provides increased potency and cancer cell killing when compared to the combination of individual HDAC
inhibitors with EGFR or EGFR/Her2 inhibitors. We believe that CUDC-101 may therefore provide for
significant cancer cell death in patients which exceeds the cell death that could be achieved with a combination
of separate anticancer agents.

We have demonstrated in preclinical studies that CUDC-101 inhibits all three of these molecular targets,
resulting in the potent killing in vitro of a wide range of cancer cell lines that are representative of a variety of
human cancer types, many of which have demonstrated resistance to various approved targeted agents. When a
number of these cancer cell lines were evaluated in xenograft efficacy models in mice, both inhibition in tumor
growth and tumor regression were observed, depending upon the cancer cell line and dose regimen tested.

While CUDC-101’s mechanism of action is not known, our data suggest that CUDC-101’s mechanism of
action involves the sensitization of cancer cells to EGFR and Her2 inhibition through HDAC inhibition.
CUDC-101 simultaneously inhibits both EGFR and Her2 at the receptor level while blocking downstream HDAC
inhibition within the cancer cells. Despite the existence of other multi-targeted inhibitors, CUDC-101 is unique
in its choice of targets which we believe enables a synergistic attack on multiple nodes or points in the overall
pathway network that are used by tumors to survive, grow, and invade surrounding tissue. Utilizing the same
targeted strategy with other currently available drugs would require combining two or three separate agents,
which typically have mismatched dosing schedules and tend to display additive dose limiting toxicities. In
contrast, we believe that CUDC-101, as a single small molecule, has the potential to act in the same cancer cells
at the same time with fewer toxic side effects and thus potentially represents an important advance in targeted
agent anti-cancer therapy.

We have been actively working toward our goal of filing an IND application for CUDC-101, and expect to

do so early in the second quarter of 2008.

Other Targeted Cancer Programs

In addition to CUDC-101, we are also seeking to advance several other small molecule drug candidates in
our targeted cancer drug development platform. Currently, the more advanced of these programs includes a

6

single agent multi-targeted inhibitor that is designed to inhibit HDAC, Bcr-Abl and Src kinases, a single agent
multi-targeted inhibitor of HDAC and Hsp90, a single agent inhibitor of Hsp90, and a single agent multi-targeted
inhibitor of HDAC and CDK2. We anticipate that, in the first half of 2008, we will select a compound from one
of these programs as the second development candidate from our targeted cancer drug development platform.
Assuming that we meet this selection timeline and that subsequent preclinical studies are successful, we
anticipate that we would submit an IND application for this second development candidate during the first half of
2009. We also plan to select a third development candidate from this platform during 2008.

Other Research Programs

Wnt Signaling Pathway

Wnt is a key developmental pathway that affects the expression of multiple target genes. Mutations in this
pathway have been linked to multiple cancers and it is believed that a modulator of components within the
pathway may provide a therapeutic for the treatment of cancer.

In April 2005 we entered into a collaboration with Genentech focused on the discovery and development of
small molecule compounds that modulate the Wnt signaling pathway. We conducted research activities under
this collaboration from April 2005 until March 2007, at which time Genentech assumed further responsibility for
any future development of this program. We will not receive future research funding under this program under
the terms of the April 2005 agreement.

We have the right to receive contingent cash payments under the agreement assuming that Genentech
pursues the development of one or more drug candidates and specified development objectives are achieved. We
are also eligible to receive royalties on product sales, should any products under this collaboration be
successfully commercialized. If Genentech does not advance drug candidates generated under this collaboration
beyond the discovery research stage, we are not entitled to receive any future cash payments under this
collaboration. We cannot predict whether Genentech will pursue the further development of drug candidates
under the agreement and/or whether any development objectives for which we may be entitled to a cash payment
will be successfully achieved.

Hedgehog Agonist

The Hedgehog signaling pathway is essential for the formation of normal nerves and nerve networks in the
central and peripheral nervous systems. Our scientists and academic collaborators have shown that treatment
with a Hedgehog protein appears to accelerate the restoration of nerve function in preclinical models of nerve
trauma and disease. This finding suggests that the Hedgehog pathway may have a potential therapeutic effect in
treating certain human neurological disorders. Published preclinical data, as well as data generated by Wyeth,
also suggests that the Hedgehog pathway may have benefit in treating cardiovascular disease. Additional
internally generated data have shown therapeutic effect in preclinical models of hair regrowth and published
third-party data also suggests that Hedgehog agonists may have a therapeutic use in wound healing and in certain
bone disorders.

In January 2004, we entered into a collaboration agreement with Wyeth to continue the development of our
Hedgehog agonist drug candidates for the treatment of neurological disorders and other potential indications,
including cardiovascular disease. From February 2004 through February 2008, we had been engaged in Wyeth-
funded preclincial research for the treatment of stroke. On March 7, 2008, Wyeth provided us with written notice
that it will terminate this collaboration agreement effective May 6, 2008. On the termination date, the licenses
granted by us to Wyeth shall terminate and all terminated license rights will revert to us. We intend to evaluate
developing additional data under this program and will seek to license this technology to a third party
collaborator following the May 6, 2008 termination date.

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Corporate Information

We were organized as a Delaware corporation in February 2000. We began our operations in July 2000
upon the completion of the merger of Creative BioMolecules, Inc., Ontogeny, Inc. and Reprogenesis, Inc. Our
principal executive office is located at 45 Moulton Street, Cambridge, Massachusetts, 02138 and our telephone
number is (617) 503-6500.

Curis™ and the Curis logo are our trademarks. This annual report on Form 10-K may also contain

trademarks and trade names of others.

Website Access to Reports

We maintain a website with the address www.curis.com. We are not including the information contained in
our website as part of, or incorporating it by reference into, this annual report on Form 10-K. Our website address
is included in this annual report on Form 10-K as an inactive textual reference only. We make available free of
charge through our website our annual reports on Form 10-K, our quarterly reports on Form 10-Q, current reports
on Form 8-K and any such amendments to those reports as soon as reasonably practicable after we electronically
file such material with, or furnish such material to, the Securities and Exchange Commission. The Securities and
Exchange Commission maintains a website, www.sec.gov,
that contains reports, proxy and information
statements and other information regarding issuers that file electronically with the SEC. The public may read and
copy any materials we file with the Securities and Exchange Commission at the SEC’s Public Reference Room at
110 F Street, N.E., Washington, D.C. 20549. In addition, we provide paper copies of our filings free of charge
upon request. We also make available on our website our corporate governance guidelines, the charters for our
audit committee, compensation committee and nominating and corporate governance committee, and our code of
business conduct and ethics, and such information is available in print to any stockholder of Curis who requests
it.

Intellectual Property

Our policy is to prosecute and enforce the patents and proprietary technology rights that are key to our
business. We intend to continue to file U.S. and foreign patent applications to protect technology, inventions and
improvements that are considered important to the development of our business. We will be able to protect our
proprietary technologies from unauthorized use by third parties only to the extent that our proprietary rights are
covered by valid and enforceable patents or are effectively maintained as trade secrets.

We have issued patents in the U.S. expiring on various dates between 2014 and 2023 with pending U.S. and
foreign counterpart patent filings for most of these patents and patent applications. These patents and patent
applications are directed to compositions of matter, methods of making and using these compositions, methods of
repairing, replacing, augmenting and creating tissue for multiple applications, methods for drug screening and
discovery, developmental biological processes, and patents relating to our proprietary technologies.

Targeted Cancer Drug Development Platform. We have filed U.S. provisional patent applications and
U.S. and foreign utility patent applications directed to our single- and multi-target inhibitor classes of novel small
molecules, as well as U.S. and foreign patent applications which generically claim the platform concept itself.
These patent applications claim compositions of matter, methods of manufacturing these molecules,
formulations, and methods of using these molecules to treat a variety of therapeutic indications. We intend to
continue to file additional U.S. and foreign applications as the program progresses.

Hedgehog Pathway. We have issued U.S. patents and allowed U.S. applications expiring on various dates
between 2014 and 2023, which relate to the Hedgehog pathway. Our patents and patent applications cover
proteins, nucleic acids, antibodies, and certain small molecule agonists and antagonists of the Hedgehog
pathway, drug screening and discovery methods, methods of protein manufacturing, as well as methods of using
the aforementioned proteins, nucleic acids, antibodies or small molecules to activate or inhibit the Hedgehog

8

pathway for a variety of therapeutic indications or diagnostic uses. In addition, we have filed foreign patent
applications corresponding to many of the aforementioned U.S. filings that could provide additional patent
protection for products that activate or inhibit the Hedgehog pathway.

Our academic and research institution collaborators have certain rights to publish data and information
regarding their discoveries to which we have rights. While we believe that the prepublication access to the data
developed by our collaborators pursuant to our collaboration agreements will be sufficient to permit us to apply
for patent protection in the areas in which we are interested in pursuing further research, there is considerable
pressure on such institutions to rapidly publish discoveries arising from their efforts. This may affect our ability
to obtain patent protection in the areas in which we may have an interest. In addition, these collaboration
agreements typically contain provisions that provide us with, at a minimum, an option to license the institution’s
rights to intellectual property arising from the collaboration.

We are party to various license agreements that give us rights to commercialize various technologies,
particularly our Hedgehog pathway technologies, and to use technologies in our research and development
processes. Our most significant license agreements include our license agreements dated February 9, 1995 and
September 1, 2000 with the President and Fellows of Harvard University, each of which were amended and
restated effective June 10, 2003; a license agreement dated January 1, 1995 and as subsequently amended with
The Trustees of the Columbia University; a license agreement dated September 26, 1996 which was amended
and restated effective June 1, 2003 with the Johns Hopkins University and the University of Washington School
of Medicine; a license agreement dated May 3, 2000 with the Johns Hopkins University; and a February 12, 1996
license agreement with the Leland Stanford Junior University. The consideration payable in exchange for these
licenses includes up-front fees, issuances of shares of common stock, annual royalties, milestone payments and
royalties on net sales by our sub-licensees and us. The licensors may terminate these agreements if we fail to
meet certain diligence requirements, fail to make payments or otherwise commit a material breach that is not
cured after notice.

In addition, we depend upon trade secrets, know-how and continuing technological advances to develop and
maintain our competitive position. To maintain the confidentiality of trade secrets and proprietary information,
we require our employees, scientific advisors, consultants and collaborators, upon commencement of a
relationship with us, to execute confidentiality agreements and, in the case of parties other than our research and
development collaborators, to agree to assign their inventions to us. These agreements are designed to protect our
proprietary information and to grant us ownership of technologies that are developed in connection with their
relationship to us.

Research Program

We have a research group that seeks to identify and develop new therapeutic applications for our existing
patent portfolio and seeks to identify new signaling pathways that may have therapeutic potential. As of
December 31, 2007, our research group consists of 27 employees, consisting of molecular biologists, cell
biologists, pharmacologists and other scientific disciplines.

During the years ended December 31, 2007, 2006 and 2005, our total company-sponsored research and
development expenses were approximately $12,260,000, $6,340,000 and $3,751,000, respectively, and our
collaborator-sponsored research and development expenses were approximately $2,519,000, $8,250,000 and
$9,954,000, respectively.

Regulatory Matters

FDA Requirements for New Drug Compounds

Numerous governmental authorities in the U.S. and other countries extensively regulate, among other
things, the research, testing, manufacture, import and export and marketing of drug products. In the U.S., drugs

9

are subject to rigorous regulation by the FDA. The Federal Food, Drug, and Cosmetic Act, and other federal and
state statutes and regulations, govern, among other things, the research, development, testing, manufacture,
storage, recordkeeping,
labeling, promotion, sampling and marketing and distribution of pharmaceutical
products. Failure to comply with applicable regulatory requirements may subject a company to a variety of
administrative or judicially imposed sanctions. These sanctions could include the FDA’s refusal to approve
pending applications, withdrawal of approvals, clinical holds, warning letters, product recalls, product seizures,
total or partial suspension of our operations, injunctions, fines, civil penalties or criminal prosecution.

The steps ordinarily required before a new pharmaceutical product may be marketed in the U.S. include
preclinical laboratory tests, animal tests and formulation studies, under the FDA’s good laboratory practice, or
GLP, regulations, the submission to the FDA of a notice of claimed investigational exemption or an IND
application, which must become effective before clinical testing may commence, adequate and well-controlled
clinical trials to establish the safety and effectiveness of the drug for each indication for which FDA approval is
sought, submission to the FDA of a new drug application, satisfactory completion of an FDA inspection of the
manufacturing facility or facilities at which the product is produced to assess compliance with current good
manufacturing practice, or cGMP, requirements and FDA review and approval of the new drug application.
Satisfaction of FDA pre-market approval requirements typically takes several years and the actual time required
may vary substantially based upon the type, complexity and novelty of the product or disease. Government
regulation may delay or prevent marketing of potential products for a considerable period of time and impose
costly procedures upon a manufacturer’s activities. Success in early stage clinical trials does not assure success in
later stage clinical trials. Data obtained from clinical activities is not always conclusive and may be susceptible to
varying interpretations that could delay, limit or prevent regulatory approval. Even if a product receives
regulatory approval, later discovery of previously unknown problems with a product, including new safety risks,
may result in restrictions on the product or even complete withdrawal of the product from the market.

Preclinical tests include laboratory evaluation of product chemistry and formulation, as well as animal trials
to assess the potential safety and efficacy of the product. The conduct of the preclinical tests and formulation of
compounds for testing must comply with federal regulations and requirements, including the FDA’s GLP
regulations. Preclinical testing is highly uncertain and may not be completed successfully within any specified
time period, if at all. Further, the successful completion of preclinical trials does not assure success in clinical
human trials. The results of preclinical testing are submitted to the FDA as part of an IND application, together
with manufacturing information and analytical and stability data of the drug formulation. The IND application
must become effective before clinical trials can begin in the United States. An IND application becomes effective
30 days after receipt by the FDA unless before that time the FDA raises concerns or questions about issues such
as the proposed clinical trials outlined in the IND application and places a clinical hold on the trials. In that case,
the IND application sponsor and the FDA must resolve any outstanding FDA concerns or questions before
clinical trials can proceed. If these concerns or questions are unresolved, the FDA may not allow the clinical
trials to commence.

Clinical trials involve the administration of the IND to healthy volunteers or patients under the supervision
of a qualified investigator. Clinical
trials must be conducted in compliance with federal regulations and
requirements, including good clinical practices, under protocols detailing, among other things, the objectives of
the trial, the parameters to be used in monitoring safety and the effectiveness criteria to be evaluated. Each
protocol involving testing on U.S. subjects must be submitted to the FDA as part of the IND application. The
study protocol and informed consent information for patients in clinical trials must be submitted to institutional
review boards for approval.

Clinical trials to support new drug applications for marketing approval are typically conducted in three
sequential phases, but the phases may overlap or be combined. In phase I, the initial introduction of the drug into
the drug is tested to assess metabolism, pharmacokinetics and
healthy human subjects or patients,
pharmacological actions and safety, including side effects associated with increasing doses and, if possible, early
evidence of effectiveness. Phase II usually involves trials in a limited patient population, to determine dosage

10

tolerance and optimum dosage, identify possible adverse effects and safety risks, and provide preliminary support
for the efficacy of the drug in the indication being studied. If a compound demonstrates evidence of effectiveness
and an acceptable safety profile in phase II evaluations, phase III trials are undertaken to further evaluate clinical
efficacy and to further test for safety within an expanded patient population, typically at geographically dispersed
clinical trial sites to establish the overall benefit-risk relationship of the drug and to provide adequate information
for the labeling of the drug. Phase I, phase II or phase III testing of any product candidates may not be completed
successfully within any specified time period, if at all. The FDA closely monitors the progress of each of the
three phases of clinical trials that are conducted in the U.S. In addition, the recently enacted Food and Drug
Administration Amendments Act of 2007, or FDAAA, significantly expands the federal government’s clinical
trial registry to cover more trials and more information, including information on the results of completed trials.
The FDA may, at
its discretion, reevaluate, alter, suspend or terminate the testing based upon the data
accumulated to that point and the FDA’s assessment of the risk/benefit ratio to the subject. The FDA, an
institutional review board, or a clinical trial sponsor may suspend or terminate clinical trials at any time for
various reasons, including a finding that the subjects or patients are being exposed to an unacceptable health risk.
The FDA can also request additional clinical trials be conducted as a condition to product approval.

After successful completion of the required clinical testing, generally a new drug application, or NDA, is
prepared and submitted to the FDA. FDA approval of the NDA is required before marketing of the product may
begin in the United States. The new drug application must include the results of extensive preclinical and clinical
testing and a compilation of data relating to the product’s pharmacology, chemistry, manufacture, and controls.
In most cases, a substantial user fee must accompany the new drug application.

If the FDA’s evaluation of the NDA and inspection of the manufacturing facilities are favorable, the FDA
may issue an approval letter, or, in some cases, an approvable letter. An approvable letter generally contains a
statement of specific conditions that must be met in order to secure final approval of the NDA. If and when those
conditions have been met to the FDA’s satisfaction, the FDA will typically issue an approval letter. An approval
letter authorizes commercial marketing of the drug with specific prescribing information for specific indications.
As a condition of NDA approval, the FDA may require post-approval testing, including phase IV trials, and
surveillance to monitor the drug’s safety or efficacy and may impose other conditions, including labeling
restrictions which can materially impact the potential market and profitability of the drug. Once granted, product
approvals may be withdrawn if compliance with regulatory standards is not maintained or problems are identified
following initial marketing.

Once the new drug application is approved, a product will be subject to certain post-approval requirements,
including requirements for adverse event reporting, submission of periodic reports, and drug sampling and
distribution requirements. Additionally, the FDA strictly regulates the promotional claims that may be made
about prescription drug products. In particular, a drug may not be promoted for uses that are not approved by the
FDA as reflected in the drug’s approved labeling. Moreover, the Department of Justice can bring civil or criminal
actions against companies that promote drugs for unapproved uses, based on the False Claims Act and other
Federal laws governing reimbursement for drugs under the Medicare and Medicaid laws. Monetary penalties in
such cases have often been in excess of $100 million. In addition, the FDA requires substantiation of any claims
of superiority of one product over another including, in many cases, requirements that such claims be proven by
adequate and well-controlled head-to-head clinical trials. After approval, some types of changes to the approved
product, such as adding new indications, manufacturing changes and additional labeling claims, are subject to
FDA review and approval of a new NDA or NDA supplement before the change can be implemented. Quality
control and manufacturing procedures must continue to conform to cGMPs after approval. Drug manufacturers
and their subcontractors are required to register their facilities with the FDA and are subject to periodic
unannounced inspections by the FDA to assess compliance with cGMPs. Accordingly, manufacturers must
continue to expend time, money and effort in the area of production and quality control to maintain compliance
with cGMPs and other aspects of regulatory compliance.

If the FDA’s evaluation of the NDA submission or manufacturing facilities is not favorable, the FDA may
refuse to approve the NDA or issue a not approvable letter. The not approvable letter outlines the deficiencies in the

11

submission and often requires additional testing or information in order for the FDA to reconsider the application.
Even with submission of this additional information, the FDA ultimately may decide that the application does not
satisfy the regulatory criteria for approval. With limited exceptions, FDA may withhold approval of a NDA
regardless of prior advice it may have provided or commitments it may have made to the sponsor.

New Legislation

On September 27, 2007, the President signed the FDAAA. The new legislation grants significant new
powers to the FDA, many of which are aimed at improving the safety of drug products before and after approval.
In particular, the new law authorizes the FDA to, among other things, require post-approval studies and clinical
trials, mandate changes to drug labeling to reflect new safety information, and require risk evaluation and
mitigation strategies for certain drugs, including certain currently approved drugs. In addition, it significantly
expands the federal government’s clinical trial registry and results databank and creates new restrictions on the
advertising and promotion of drug products. Under the FDAAA, companies that violate these and other
provisions of the new law are subject to substantial civil monetary penalties.

While we expect

these provisions of the FDAAA, among others,

to have a substantial effect on the
pharmaceutical industry, the extent of that effect is not yet known. As the FDA issues regulations, guidance and
interpretations relating to the new legislation, the impact on the industry, as well as our business, will become clearer.
The new requirements and other changes that the FDAAA imposes may make it more difficult, and likely more costly,
to obtain approval of new pharmaceutical products and to produce, market and distribute existing products.

Foreign Regulation of New Drug Compounds

Approval of a drug product by comparable regulatory authorities will be necessary in foreign countries prior
to the commencement of marketing of the product in those countries, whether or not FDA approval has been
obtained. While clinical data generated in the U.S. may be accepted in many foreign jurisdictions in lieu of early
stage clinical trials (phase I), the approval procedure varies among countries and can involve requirements for
additional testing equivalent to phases II and III. The time required may differ from that required for FDA
approval and may be longer than that required to obtain FDA approval. There can be substantial delays in
obtaining required approvals from foreign regulatory authorities after the relevant applications are filed.

In Europe, marketing authorizations may be submitted under a centralized or decentralized procedure. The
centralized procedure is mandatory for the approval of biotechnology products and many pharmaceutical
products, and provides for the grant of a single marketing authorization, which is valid in all European Union
member states. The decentralized procedure is a mutual recognition procedure that is available at the request of
the applicant for medicinal products that are not subject to the centralized procedure.

Hazardous Materials

Our research and development processes involve the controlled use of hazardous materials, chemicals and
radioactive materials and produce waste products. We are subject to federal, state and local laws and regulations
governing the use, manufacture, storage, handling and disposal of hazardous materials and waste products.

Competition

Our product candidates, if approved, will compete with existing and new products being developed by
others for treatment of the same indications. Competition in the development of human therapeutics and, in
particular, human therapeutics based upon signaling pathways, is intense. Our competitors may include many
large pharmaceutical and biopharmaceutical companies, as well as specialized biotechnology firms. There are
several companies developing drug candidates that target the same cancer pathways that we are also targeting
utilizing our proprietary targeted cancer drug development platform. We believe that our competitive advantage

12

over these companies is our strategy of developing drug candidates to target unique combinations of these cancer
pathways to achieve synergistic effect. In addition to these competitors, we have identified biotechnology and
pharmaceutical companies that claim to have intellectual property rights and drug development programs relating
to compounds that modulate the Hedgehog pathway.

Many of the companies competing against us have financial, marketing and human resource capacities that
are substantially greater than our own, which may provide these competitors with significant competitive
advantages over us. Others have extensive experience in undertaking clinical trials, in obtaining regulatory
approval to market products, in manufacturing products on a large scale and in effectively promoting products to
healthcare providers, health plans and consumers which may enhance their competitive position relative to ours.
Most of the major pharmaceutical and biotechnology companies are developing targeted cancer therapies. In
addition to competing with pharmaceutical, biotechnology and medical device companies, the products we are
developing would also compete with those being developed by academic and research institutions, government
agencies and other public organizations. Any of these organizations may discover new therapies, seek patent
protection or establish collaborative arrangements for products and technologies that are competitive with our
products and technologies.

The technologies underlying the development of human therapeutic products are expected to continue to
undergo rapid and significant advancement and unpredictable changes. Accordingly, our technological and
commercial success will be based, among other things, on our ability to develop proprietary positions in key
scientific areas and efficiently evaluate potential product opportunities.

The timing of a product’s introduction may be a major factor in determining eventual commercial success
and profitability. Early entry may have important advantages in gaining product acceptance and market share.
Accordingly, we believe the relative speed with which we or any current or future collaborator can complete
preclinical and clinical testing, obtain regulatory approvals, and supply commercial quantities of a product will
have an important impact on our competitive position, both in the U.S. and abroad. Other companies may
succeed in developing similar products that are introduced earlier, are more effective, or are produced and
marketed more effectively, or at a minimum obtain a portion of the market share. For example, our competitors
may discover, characterize and develop important targeted cancer molecules before we do, which could have a
material adverse effect on any of our related research programs. If research and development by others renders
any of our products obsolete or noncompetitive, then our potential for success and profitability may be adversely
affected.

For certain of our programs, we rely on, or intend to rely on, strategic collaborators for support in our
disease research programs and for preclinical evaluation and clinical development of our potential products and
manufacturing and marketing of any products. Our strategic collaborators may conduct multiple product
development efforts within each disease area that is the subject of our strategic collaboration with them. Our
strategic collaboration agreements may not restrict the strategic collaborator from pursuing competing internal
development efforts. Any of our product candidates, therefore, may be subject to competition with a product
candidate under development by a strategic collaborator.

Manufacturing

We have no experience or capabilities in manufacturing. We have no current plans to develop
manufacturing capability and instead plan to rely on corporate collaborators or subcontractors to manufacture
products. If any of our current or planned collaborators or subcontractors encounters regulatory compliance
problems or enforcement actions for their own or a collaborative product, it could have a material adverse effect
on our business prospects.

13

Sales and Marketing

We have no sales, marketing or distribution experience or infrastructure and we have no current plans to
develop a sales, marketing and distribution capability. We currently plan to rely on corporate collaborators for
product sales, marketing and distribution.

Scientific Governance

We have established a scientific advisory board as well as a clinical advisory board, each made up of leading
scientists and physicians in the field of cancer drug development. Members of these boards consult with us on matters
relating to our research and development programs, including clinical trial designs, new technologies relevant to our
research and development programs and other scientific and technical issues relevant to our business.

The current members of our scientific advisory board are as follows:

Name

Position/Institutional Affiliation

Joseph M. Davie, Ph.D., M.D. (Chairman) . . . . . . .

Stuart Aaronson, M.D . . . . . . . . . . . . . . . . . . . . . . .

Kenneth Pienta, M.D . . . . . . . . . . . . . . . . . . . . . . . .

George Vande Woude, Ph.D . . . . . . . . . . . . . . . . . .

Director, Curis, Inc.
Director, CV Therapeutics, Inc.
Director, Keel Pharmaceuticals, Inc.
Director, GENTIAE Clinical Research, Inc.
Director, Ocera, Inc.
Director, Stratatech Corporation
Director, Targeted Genetics, Inc.
Director, BG Medicine
Institute of Medicine since 1987

Chairman of the Department of Oncological
Sciences and the Jane B. and Jack R. Aron
Professor of Neoplastic Diseases, Mount Sinai
School of Medicine

Professor, Internal Medicine and Urology and
Co-director, Urologic Oncology Program, The
University of Michigan Comprehensive Cancer
Center
Director, Translational Medicine Committee of
the Southwest Oncology Group (SWOG)
Principal investigator, The University of
Michigan’s SPORE (Specialized Program of
Research Excellence) in prostate cancer
awarded from the National Cancer Institute

Director, Van Andel Research Institute
Co-editor, Advances in Cancer Research

14

The current members of our clinical advisory board are as follows:

Name

Position/Institutional Affiliation

Kenneth Pienta, M.D (chairman) . . . . . . . . . . . . . . .

See scientific advisory board table

Philip A. Philip, M.D.

. . . . . . . . . . . . . . . . . . . . . . .

Samir Witta, M.D., Ph.D. . . . . . . . . . . . . . . . . . . . . .

Professor of Medicine, Wayne State University
School of Medicine
Clinical Professor of Oncology, Barbara Ann
Karmanos Cancer Institute
Editorial Board Member, Internet Journal of
Oncology and Community Oncology Member,
American Pancreatic Association Member,
American Society of Clinical Oncology
American Board of Internal Medicine-Certified,
Internal Medicine and Medical Oncology

Clinical Assistant Professor, Internal Medicine,
Division of Oncology, University of Colorado
Cancer Center
Member, American Society of Clinical
Oncology

Employees

As of December 31, 2007, we had 42 full-time employees, of whom 19 hold a Ph.D. or other advanced
degree. Of these employees, 27 are currently involved in research and development. None of our employees is a
party to a collective bargaining agreement, and we consider our relations with our employees to be good.

15

ITEM 1A. RISK FACTORS

RISKS RELATING TO OUR FINANCIAL RESULTS AND NEED FOR FINANCING

We have incurred substantial losses, we expect to continue to incur substantial losses for the foreseeable
future and we may never generate significant revenue or achieve profitability.

As of December 31, 2007, we had an accumulated deficit of approximately $695,848,000. We have not
successfully commercialized any products to date, either alone or in collaboration with others. If we are not able
to successfully commercialize any products, whether alone or with a collaborator, we will not achieve
profitability. All of our product candidates are in early stages of development. As a result, for the foreseeable
future, we will need to spend significant capital, particularly on our internally funded targeted cancer drug
development platform, in an effort to produce products that we can commercialize. As such, we expect to incur
substantial operating losses for the foreseeable future.

We have no current sources of material ongoing research funding revenue. We have historically derived a
substantial portion of our revenue from the research funding portion of our collaboration agreements. Research
funding related to our ongoing Hedgehog antagonist and Wnt signaling pathway collaborations with Genentech
concluded in the fourth quarter of 2006 and the first quarter of 2007, respectively. In addition, research funding
under our Hedgehog agonist collaboration with Wyeth concluded in February 2008 and on March 7, 2008, Wyeth
provided us with written notice that it will terminate this collaboration agreement effective May 6, 2008.
Accordingly, our future revenues will be limited to (i) the amortization of previously received license payments
from Wyeth and Stryker Corporation at December 31, 2007, (ii) potential future cash payments, if any, that are
principally contingent upon the successful completion of contractually defined development and regulatory
approval objectives under our collaborations with Genentech, and (iii) royalty payments, if any, that we may
receive upon the successful commercialization of any products based upon our licensed programs and
technologies. The pursuit and achievement of any development or commercialization objectives is substantially
within the collaborators’ sole control. In addition, there is considerable inherent uncertainty in the successful
development and commercialization of pharmaceutical drugs. As a result, we cannot assure you that any further
revenue will be attained by us under these collaborations.

We will need to generate significant revenues in order to fund our operations and achieve profitability. We
cannot be certain whether or when this will occur because of the significant uncertainties that affect our business,
including the various risks described in this section titled “Risk Factors”. Our failure to become and remain
profitable may depress the market price of our common stock and could impair our ability to raise capital,
expand our business, diversify our research and development programs or continue our operations.

We will require substantial additional capital, which may be difficult to obtain and may result in
stockholder dilution.

We will require substantial funds to continue our research and development programs and to fulfill our
planned operating goals. In particular, our currently planned operating and capital requirements include the need
for working capital to:

•

•

•

support our research and development activities for CUDC-101 and other small molecule multi-targeted
inhibitors that we are seeking to develop under our targeted cancer drug development platform;

fund our general and administrative costs and expenses; and

potentially expand our infrastructure.

We believe that our existing cash, cash equivalents and other working capital, should be sufficient to fund
our operations into the second half of 2009; however, our future capital requirements may vary from what we

16

currently expect. There are factors that may adversely affect our planned future capital requirements and
accelerate our need for additional financing. These factors, many of which are outside our control, include the
following:

•

•

•

•

•

•

•

unanticipated costs in our research and development programs;

the timing and cost of obtaining regulatory approvals for our product candidates;

the cost of additional facility requirements;

the timing, receipt and amount of research funding and contingent cash payments, license, royalty and
other payments, if any, from current and potential future collaborators;

the timing, payment and amount of research funding and contingent cash payments, license, royalty and
other payments due to licensors of patent rights and technology used in our product candidates;

the timing, receipt and amount of sales revenues and/or royalties, if any, that we may receive in the
future if any of our product candidates are successfully developed and commercialized; and

the costs of preparing, filing, prosecuting, maintaining and enforcing patent claims and other patent-
related costs, including litigation costs and technology license fees.

We expect to seek additional funding through public or private financings of debt or equity as well as from
additional strategic collaborations. The market for biotechnology stocks in general, and the market for our
common stock in particular, is highly volatile. Due to this and various other factors, including general market
conditions and the early-stage status of our development pipeline, additional funding may not be available to us
on acceptable terms, if at all. If we fail to obtain such additional financing on a timely basis, our ability to
continue all of our research and development activities will be adversely affected.

If we raise additional funds by issuing equity securities, dilution to our stockholders will result. In addition,
the terms of such a financing may adversely affect other rights of our stockholders. We also could elect to seek
funds through arrangements with collaborators or others that may require us to relinquish rights to certain
technologies, product candidates or products.

We may face fluctuations in our operating results from period to period, which may result in a drop in our
stock price.

Our operating results have fluctuated significantly from period to period in the past and may rise or fall

significantly from period to period in the future as a result of many factors, including:

•

•

•

•

•

•

•

•

•

•

the cost of research and development that we engage in;

the timing, receipt and amount of research funding and contingent cash payments, license, royalty and
other payments, if any, from current and potential future collaborators;

the entry into, or termination of, collaboration agreements;

the number of product candidates we have and their progress in achieving pre-clinical and clinical
development objectives;

the scope, duration and effectiveness of our collaborative arrangements;

the costs involved in prosecuting, maintaining and enforcing patent claims;

costs to comply with changes in government regulations;

changes in management and reductions or additions of personnel;

changes in accounting estimates, policies or principles; and

the introduction of competitive products and technologies by third parties.

Except for our systemically administered Hedgehog antagonist program, which is being evaluated by our
collaborator, Genentech, in an expansion cohort of an ongoing phase I clinical trial, all of our programs are in

17

various stages of preclinical drug development. Accordingly, our revenues from sales of approved products may
not occur for several years, if at all. While we may receive contingent cash payments upon the achievement of
certain objectives defined within our collaboration agreements with Genentech, the timing of such payments is
uncertain. In addition, the amount of these payments and the methodology that we would record such payments
to revenue vary for each of our collaborator agreements. As a result, we may experience fluctuations in our
operating results from quarter to quarter and continue to generate losses. Quarterly comparisons of our financial
results may not necessarily be meaningful, and investors should not rely upon such results as an indication of our
future performance. In addition, investors may react adversely if our reported operating results are less favorable
than in a prior period or are less favorable than those anticipated by investors or the financial community, which
may result in a drop of our stock price.

We determined that certain accounting errors in our financial statements had a material impact on our
previously reported financial information. As a result of this determination, we restated our financial
results for 2003, 2004 and for the quarters ended March 31, 2005, June 30, 2005 and September 30, 2005.
The restatement could subject us to securities litigation.

As discussed in Note 2 of the notes to our consolidated financial statements included in our Annual Report
on Form 10-K for the year ended December 31, 2005, in March 2006, we restated our financial results for 2003,
2004 and for the quarters ended March 31, 2005, June 30, 2005, and September 30, 2005. The restatement relates
primarily to accounting errors in prior periods with respect to our revenue recognition accounting for $7,509,000
in license and maintenance fee payments paid by Genentech as part of our June 2003 Hedgehog antagonist
collaboration with Genentech. We had been recognizing revenue in connection with the $7,509,000 in payments
over an eight-year period based on our estimate that our participation on the steering committees for the
collaboration would become inconsequential after the first product was approved in each of the two programs
covered under this collaboration, and would therefore no longer represent a performance obligation. Accordingly,
from fiscal year 2003 through the third quarter of 2005, we had recognized $2,239,000 in license fee revenue
related to these payments. Following discussions with the SEC, we determined we should not have recognized
any of this revenue in 2003, 2004 or 2005. As a result, we restated our financial results for these periods to defer
the $7,509,000 in payments and determined that we would only recognize this amount as revenue when we could
reasonably estimate when our contractual steering committee obligations would become inconsequential or after
we no longer had contractual steering committee obligations under this agreement with Genentech.

Securities class action litigation has often been brought in connection with restatements of financial
statements. Defending against such potential litigation relating to a restatement of our financial statements would
be expensive and would require significant attention and resources of our management. Moreover, our insurance
to cover our obligations with respect to the ultimate resolution of any such litigation may be inadequate. As a
result of these factors, any such potential litigation could have a material adverse effect on our business, results
of operations and financial condition.

If the estimates we make and the assumptions on which we rely in preparing our financial statements
prove inaccurate, our actual results may vary significantly.

Our financial statements have been prepared in accordance with accounting principles generally accepted in
the United States. The preparation of these financial statements requires us to make estimates and judgments that
affect the reported amounts of our assets, liabilities, revenues and expenses, the amounts of charges taken by us
and related disclosure. Such estimates and judgments include the carrying value of our property, equipment and
intangible assets, revenue recognition and the value of certain liabilities. We base our estimates and judgments on
historical experience and on various other assumptions that we believe to be reasonable under the circumstances.
However,
these estimates and judgments, or the assumptions underlying them, may change over time.
Accordingly, our actual financial results may vary significantly from the estimates contained in our financial
statements. For example, as discussed above in March 2006 we determined that certain accounting errors in our
financial statements had a material impact on our previously reported financial information. As a result of this

18

determination, we restated our financial results for 2003, 2004 and for the quarters ended March 31,
2005, June 30, 2005 and September 30, 2005. The restatement could subject us to securities litigation.

For a further discussion of the estimates and judgments that we make and the critical accounting policies
that affect these estimates and judgments, see “Management’s Discussion and Analysis of Financial Condition
and Results of Operations—Critical Accounting Policies and Estimates” elsewhere in this annual report on
Form 10-K.

Compliance with changing regulation of corporate governance and public disclosure as well as potential
new accounting pronouncements are likely to impact our future financial position or results of operations.

Changing laws, regulations and standards relating to corporate governance and public disclosure, new SEC
regulations and NASDAQ Global Market rules are creating uncertainty for companies such as ours. These new or
changed laws, regulations and standards are subject to varying interpretations in many cases due to their lack of
specificity, and as a result, their application in practice may evolve over time as new guidance is provided by
regulatory and governing bodies, which could result in continuing uncertainty regarding compliance matters and
higher costs necessitated by ongoing revisions to disclosure and governance practices. In addition, future changes
in financial accounting standards may cause adverse, unexpected revenue fluctuations and affect our financial
position or results of operations. New accounting pronouncements and varying interpretations of pronouncements
have occurred with frequency in the past and may occur again in the future and as a result we may be required to
make changes in our accounting policies, for example the 2006 requirement under SFAS 123(R) to expense stock
options.

Our efforts to comply with evolving laws, regulations and standards have resulted in, and are likely to
continue to result in, increased general and administrative expenses and management time related to compliance
activities. We expect these efforts to require the continued commitment of significant resources. If our efforts to
comply with new or changed laws, regulations and standards differ from the activities intended by regulatory or
governing bodies due to ambiguities related to practice, our reputation may be harmed and we might be subject
to sanctions or investigation by regulatory authorities, such as the SEC. Any such action could adversely affect
our financial results and the market price of our common stock.

Failure to maintain effective internal controls in accordance with section 404 of the Sarbanes-Oxley act
could have a material adverse effect on our business and stock price.

Section 404 of the Sarbanes-Oxley Act of 2002 requires management’s annual review and evaluation of our
internal controls, and attestations of the effectiveness of our internal controls by our independent auditors. Our
failure to maintain the effectiveness of our internal controls in accordance with the requirements of Section 404
of the Sarbanes-Oxley Act, as such standards are modified, supplemented or amended from time to time, could
have a material adverse effect on our business, operating results and stock price.

RISKS RELATING TO COLLABORATIONS

We depend on Genentech for the development and commercialization of certain product candidates based
upon our technologies and plan to enter into additional collaborations in the future. If any of our current
or planned agreements with collaborators are terminated, or if such collaborators fail or delay in
developing or commercializing our product candidates, our anticipated product pipeline and operating
results would suffer.

The success of our strategy for development and commercialization of certain licensed product
candidates depends upon our ability to form and maintain productive and successful strategic
collaborations. We currently have two collaborations with Genentech pursuant
to which we have
granted to Genentech exclusive rights to develop and commercialize products based upon our

19

technologies in defined fields of use. In addition, we are seeking to enter into additional collaborations in the
future, including a potential collaboration related to the development of one or more candidates from our targeted
cancer drug development platform. Our existing and any future collaborations may not be scientifically or
commercially successful.

The risks that we face in connection with our current and potential future collaborations include the

following:

• Our current collaborator has, and we expect any planned future collaborators will have, significant
discretion in determining the efforts and resources that it will apply to the collaboration. The timing and
amount of any cash payments related to future royalties, research support and the achievement of
development objectives that we may receive under any such collaborative arrangements will depend on,
among other things, each collaborator’s efforts and allocation of resources.

• Our strategic collaboration agreements with Genentech permit, and our planned future collaborations are
expected to permit, our collaborators wide discretion in terms of deciding which product candidates to
advance to development candidate selection and through the clinical trial process. It is possible for
product candidates to be rejected by a collaborator, at any point in the clinical trial process, without
triggering a termination of the collaboration agreement with us. In the event of such decisions, we may
be adversely affected due to our inability to progress product candidates ourselves.

• Our current and planned collaborators may develop and commercialize, either alone or with others,
products and services that are similar to or competitive with the products and services that are the
subject of the collaboration with us.

• Our current and planned collaborators may change the focus of

their development and
commercialization efforts or pursue higher-priority programs. The ability of certain of our product
candidates to be successfully commercialized could be limited if our current and planned collaborators
decrease or fail to increase spending related to such product candidates.

We may not be successful in establishing additional strategic collaborations, which could adversely affect
our ability to develop and commercialize products.

As an integral part of our ongoing research and development efforts, we periodically review opportunities to
establish new strategic collaborations for the development and commercialization of products in our development
pipeline. For example, we are currently seeking a corporate collaboration for one or more programs that we are
developing under our propriety targeted cancer drug development platform and also intend to seek a
collaborative partner for our Hedgehog agonist program. We face significant competition in seeking appropriate
collaborators and the negotiation process is time-consuming and complex. We may not be successful in our
efforts to establish a collaboration or other alternative arrangements for any of these programs because, for
example, our research and development pipeline may be insufficient or our programs may be deemed to be at too
early of a stage of development for collaborative effort. Even if we are successful in our efforts to establish new
collaborations, the terms that we agree upon may not be favorable to us. Finally, any such strategic alliances or
other arrangements may not result in the successful development and commercialization of products and
associated revenue.

RISKS RELATED TO OUR BUSINESS, INDUSTRY, STRATEGY AND OPERATIONS

We and our current and planned collaborators may not achieve our projected research and development
goals in the time frames we announce and expect, which could have an adverse impact on our business and
could cause our stock price to decline.

We set goals for, and make public statements regarding, the timing of certain accomplishments, such as the
commencement and completion of preclinical studies,
trials, and other
developments and milestones under our proprietary programs and those programs being developed under collaboration

initiation and completion of clinical

20

agreements. For example, we have estimated that we will seek to submit an IND application to commence clinical
trials of CUDC-101 early in the second quarter of 2008 and select a second development candidate from our targeted
cancer drug development platform in the first half of 2008. The actual timing of these events can vary dramatically due
to a number of factors such as delays or failures in our preclinical studies or clinical trials, the amount of time, effort
and resources committed to our programs by us and the uncertainties inherent in the regulatory approval process. There
can be no assurance that our or our current and planned collaborators’ preclinical studies and clinical trials will advance
or be completed in the time frames we announce or expect, that we or our current and planned collaborators will make
regulatory submissions or receive regulatory approvals as planned or that we or our current and planned collaborators
will be able to adhere to our current schedule for the achievement of key milestones under any of our internal or
collaborative programs. If we or any collaborators fail to achieve one or more of these milestones as planned, our
business could be materially adversely affected and the price of our common stock could decline.

We face substantial competition, which may result in our competitors discovering, developing or
commercializing products before or more successfully than we do.

Our product candidates face competition from existing and new technologies and products being developed
by biotechnology, medical device and pharmaceutical companies, as well as universities and other research
institutions. For example, research in the Hedgehog signaling pathway is increasingly competitive. We are
developing Hedgehog-based therapies under our collaborations with Genentech in the field of cancer.
Competitors may discover, characterize and develop Hedgehog antagonist drug candidates before we do.

In addition, our multi-target

inhibitors being developed under our targeted cancer drug development
platform, which are focused primarily on clinically validated cancer targets, face significant competition from
marketed drugs and drugs under development that seek to inhibit the same targets as our drug candidates.

Many of our competitors have substantially greater capital resources, research and development staffs and
facilities than we have. Efforts by other biotechnology, medical device and pharmaceutical companies could
render our programs or products uneconomical or result in therapies superior to those that we develop alone or
with a collaborator.

For those programs that we have selected for internal development, we face competition from companies
that are more experienced in product development and commercialization, obtaining regulatory approvals and
product manufacturing. Other smaller companies may also prove to be significant competitors, particularly
through collaborative arrangements with large and established companies. As a result, any of these companies
may be more successful
in obtaining collaboration agreements or other monetary support, approval and
commercialization of their products and/or may develop competing products more rapidly and/or at a lower cost.
For those programs that are subject to a collaboration agreement, competitors may have greater expertise in
testing, obtaining regulatory
discovery, research and development, manufacturing, preclinical and clinical
approvals and marketing than our collaborators and, consequently, may discover, develop and commercialize
products that render our products non-competitive or obsolete.

We expect competition to intensify in cancer generally and, specifically, in targeted approaches to develop

potential cancer therapies as technical advances in the field are made and become more widely known.

If we or any of our current and planned collaborators fail to achieve market acceptance for our products
under development, our future revenue and ability to achieve profitability may be adversely affected.

Our future products, if any are successfully developed, may not gain commercial acceptance among
physicians, patients and third-party payors, even if necessary marketing approvals have been obtained. We
believe that recommendations and endorsements by physicians will be essential for market acceptance of any
products we successfully develop. If we are not able to obtain market acceptance for such products, our expected
revenues from sales of these products would be adversely affected and our business may not be successful.

21

We could be exposed to significant monetary damages and business harm if we are unable to obtain or
maintain adequate product liability insurance at acceptable costs or otherwise protect ourselves against
potential product liability claims.

Product liability claims inherent in the process of researching, developing and commercializing human
health care products could expose us to significant liabilities and prevent or interfere with the development or
commercialization of our product candidates. Product
liability insurance is expensive to procure for
biopharmaceutical companies such as ours. Product liability claims would require us to spend significant time,
money and other resources to defend such claims and could ultimately to pay a significant damage award.
Because we are not currently conducting any clinical trials or commercializing any products, we do not currently
carry any product liability insurance. We plan to purchase product liability insurance for our expected phase I
clinical trial of CUDC-101, which we expect will begin in the first half of 2008. Although we would seek to
obtain and maintain product liability insurance coverage for this and any other future clinical trials of our
products under development, it is possible that we will not be able to obtain this product liability insurance on
acceptable terms, if at all, and that our product liability insurance coverage would not prove to be adequate to
protect us from all potential claims.

If we are not able to attract and retain key management and scientific personnel and advisors, we may not
successfully develop our product candidates or achieve our other business objectives.

We depend upon our senior management and scientific staff, including Daniel R. Passeri, our President and
Chief Executive Officer, Michael P. Gray, our Chief Operating Officer and Chief Financial Officer, and
Changgeng Qian, Ph.D., M.D., our Vice President, Discovery and Preclinical Development. The loss of the
service of any of the key members of our senior management may significantly delay or prevent the achievement
of product development and other business objectives. Our officers can terminate their employment with us at
any time, although we are not aware of any present intention of any of these individuals to leave our company.
Replacing key employees may be difficult and may take an extended period of time because of the limited
number of individuals in our industry with the breadth of skills and experience required to research, develop and
successfully commercialize products in our areas of core competency. We do not maintain key man life
insurance on any of these executive officers.

Our ability to operate successfully will depend on our ability to attract and retain qualified personnel,
consultants and advisors. We face intense competition for qualified individuals from numerous pharmaceutical
and biotechnology companies, universities, governmental entities and other research institutions. We may be
unable to attract and retain these individuals, and our failure to do so would have an adverse effect on our
business.

We may seek to acquire complementary businesses and technologies in the future or otherwise seek to
expand our operations to grow our business, which may divert management resources and adversely affect
our financial condition and operating results.

We may seek to expand our operations in the future, including without limitation through internal growth
and/or the acquisition of businesses and technologies that we believe are a strategic complement to our business
model. We may not be able to identify suitable acquisition candidates or expansion strategies and successfully
complete such acquisitions or successfully execute any such other expansion strategies. We may never realize the
anticipated benefits of any efforts to expand our business. Furthermore, the expansion of our business, either
through internal growth or through acquisitions, poses significant risks to our existing operations, financial
condition and operating results, including:

•

•

•

a diversion of management from our existing operations;

increased operating complexity of our business, requiring greater personnel and resources;

significant additional cash expenditures to expand our operations and acquire and integrate new
businesses and technologies;

22

•

•

incurrence of debt, other liabilities and contingent liabilities; and

dilutive stock issuances.

Any business that we conduct in China will expose us to the risk of adverse changes in political, legal and
economic policies of the Chinese government, which changes could impede our preclinical efforts in China
and materially and adversely affect the development of our Targeted Cancer Drug Development platform.

We are developing our targeted cancer drug development platform using standard medicinal chemistry
approaches to create proprietary targeted cancer drugs. In order to satisfy the platform’s extensive medicinal
chemistry requirements, we currently engage 25 to 30 medicinal chemists in Shanghai, China pursuant to an
agreement with a medicinal chemistry provider in Shanghai. The economics of doing business in China allow us
to engage approximately five chemists for the same price as one chemist at U.S. or European chemistry
providers. We also currently engage approximately 6 biologists at another third-party provider in Beijing, China.
In addition, we have a subsidiary in China, Curis Shanghai, that is currently licensed but is not operational.

Conducting business in China exposes us to a variety of risks and uncertainties that are unique to China. The
economy of China has been transitioning from a planned economy to a more market-oriented economy. Although
in recent years the Chinese government has implemented measures emphasizing the utilization of market forces
for economic reform, the reduction of state ownership of productive assets and the establishment of sound
corporate governance in business enterprises, a substantial portion of productive assets in China is still owned by
the Chinese government. In addition, the Chinese government continues to play a significant role in regulating
industrial development. It also exercises significant control over China’s economic growth through the allocation
of resources, controlling payment of foreign currency-denominated obligations, setting monetary policy and
providing preferential treatment to particular industries or companies. Efforts by the Chinese government to slow
the pace of growth of the Chinese economy could result in interruptions of our development efforts in China. If
our development efforts in China are delayed due to such interruptions, we may not realize the reductions in
costs anticipated from engaging chemists in China. We would also have to consider moving our chemistry and/or
biology that is currently conducted in China to U.S. or European providers, thereby either increasing our overall
costs for such services or reducing the total number of chemists and or/biologists that we could engage.

In addition, the Chinese legal system is a civil law system based on written statutes. Unlike common law
systems, it is a system in which decided legal cases have little precedential value. In 1979, the Chinese
government began to promulgate a comprehensive system of laws and regulations governing economic matters in
general. Accordingly, we cannot predict the effect of future developments in the Chinese legal system, including
the promulgation of new laws, changes to existing laws or the interpretation or enforcement thereof, or the
preemption of local regulations by national laws. Our business could be materially harmed by any changes in the
political, legal or economic climate in China or the inability to enforce applicable Chinese laws and regulations.

RISKS RELATING TO OUR INTELLECTUAL PROPERTY

If we or any of our licensees or assignees breach any of the agreements under which we license or transfer
intellectual property to others, we could be deprived of important intellectual property rights and future
revenue.

We are a party to intellectual property out-licenses, collaborations and agreements that are important to
our business, including our June 2003 and April 2005 collaboration agreements with Genentech and our
December 2007 assignment agreement with Stryker Corporation, and we expect
to enter into similar
agreements with third parties in the future. Under these agreements, we generally license or transfer
intellectual property to third parties and impose various research, development, commercialization,
sublicensing, royalty, indemnification, insurance, and other obligations on them. If a third party fails to
comply with these requirements, we generally retain the right to terminate the agreement, and to bring a
legal action in court or in arbitration. In the event of breach, we may need to enforce our rights under

23

these agreements by resorting to arbitration or litigation. During the period of arbitration or litigation, we may be
unable to effectively use, assign or license the relevant intellectual property rights and may be deprived of current
or future revenues that are associated with such intellectual property.

We in-license certain of our principal proprietary technologies, and if we fail to comply with our
obligations under any of the related agreements, or fail to secure any required new licenses, we could lose
license rights that are necessary to commercializing our product candidates.

We are party to various license agreements that give us rights to commercialize various technologies,
particularly our Hedgehog pathway technologies, and to use technologies in our research and development
processes. Our most significant in-license agreements are with Harvard University, Columbia University, the
Johns Hopkins University both alone and with the University of Washington, and Leland Stanford Junior
University. Some of these license agreements impose various development, commercialization, funding, royalty,
diligence, and other obligations on us, which provide that our failure to meet any agreed upon requirements may
allow the licensor to terminate the agreement. Some of our license agreements grant us exclusive licenses to the
underlying technologies. If our licensors terminate our license agreements or if we are unable to maintain the
exclusivity of our exclusive license agreements, we may be unable to continue to develop and commercialize our
product candidates. In addition, continued development and commercialization of our product candidates may
require us to secure licenses to additional technologies. We may not be able to secure these licenses on
commercially reasonable terms, if at all.

We may not be able to obtain patent protection for our technologies and the patent protection we do
obtain may not be sufficient to stop our competitors from using similar technology.

The patent positions of pharmaceutical and biotechnology companies,

including ours, are generally
uncertain and involve complex legal, scientific and factual questions. The procedures and standards that the
United States Patent and Trademark Office and various foreign intellectual property offices use to grant patents,
and the standards that courts use to interpret patents, are not always applied predictably or uniformly and have
recently changed in a significant way and are expected to continue to change. Consequently, the level of
protection, if any, that will be obtained and provided by our patents if we attempt to enforce them, and they are
challenged, is uncertain. The long-term success of our business depends in significant part on our ability to:

•

•

•

•

obtain patents to protect our technologies and discoveries;

protect trade secrets from disclosure to third-party competitors;

operate without infringing upon the proprietary rights of others; and

prevent others from infringing on our proprietary rights.

Patents may not issue from any of the patent applications that we own or license. If patents do issue, the
type and extent of patent claims issued to us may not be sufficient to protect our technology from exploitation by
our competitors. In addition,
invalidated or
circumvented. Our patents also may not afford us protection against competitors with similar technology.
Because patent applications in the United States and abroad are maintained in secrecy until 18 months after
filing, it is possible that third parties have filed or maintained patent applications for technology used by us or
covered by our pending patent applications without our knowledge.

issued patents that we own or license may be challenged,

We may not have rights under patents that may cover one or more of our product candidates. In some cases,
these patents may be owned or controlled by third-party competitors and may prevent or impair our ability to
exploit our technology. As a result, we or our current or planned collaborative partners may be required to obtain
licenses under third-party patents to develop and commercialize some of our product candidates. If we are unable
to secure licenses to such patented technology on acceptable terms, we or our collaborative partners will not be
able to develop and commercialize the affected product candidate or candidates.

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We may become involved in expensive and unpredictable litigation, and in particular, patent litigation or
other intellectual property proceedings, which could result
in liability for damages or stop our
development and commercialization efforts.

Substantial, complex or extended litigation could cause us to incur large expenditures and distract our
management, and could result in significant monetary or equitable judgments against us. For example, lawsuits
by employees, licensors, licensees, suppliers, distributors, stockholders, or competitors could be very costly and
substantially disrupt our business. Disputes from time to time with such companies or individuals are not
uncommon, and we cannot assure that we will always be able to resolve such disputes out of court or on terms
favorable to us. Any claims, with or without merit, and regardless of whether we prevail in the dispute, would be
time-consuming, could result in costly litigation and the diversion of technical and management personnel.

In recent years, there have been substantial litigation and other proceedings regarding patent and other
intellectual property rights in the pharmaceutical and biotechnology industries. We may become a party to patent
litigation or other proceedings regarding intellectual property rights.

Situations that may give rise to patent litigation or other disputes over the use of our intellectual property

include:

•

•

•

•

•

•

initiation of litigation or other proceedings against third parties to enforce our patent rights;

initiation of litigation or other proceedings against third parties to seek to invalidate the patents held by
these third parties or to obtain a judgment that our product candidates do not infringe the third parties’
patents;

participation in interference proceedings to determine the priority of invention if our competitors file
U.S. patent applications that claim technology also claimed by us;

initiation of foreign opposition proceedings by third parties that seek to limit or eliminate the scope of
our patent protection in a foreign jurisdiction;

initiation of litigation by third parties claiming that our processes or product candidates or the intended
use of our product candidates infringe their patent or other intellectual property rights; and

initiation of litigation by us or third parties seeking to enforce contract rights relating to intellectual
property that may be important to our business.

The costs associated with any patent litigation or other proceeding, even if resolved favorably, will likely be
substantial. Some of our competitors may be able to sustain the cost of such litigation or other proceedings more
effectively than we can because of their substantially greater financial resources. If a patent litigation or other
intellectual property proceeding is resolved unfavorably, we or any collaborative partners may be enjoined from
manufacturing or selling our products and services without a license from the other party and be held liable for
significant damages. Moreover, we may not be able to obtain required licenses on commercially acceptable terms
or any terms at all. In addition, we could be held liable for lost profits if we are found to have infringed a valid
patent, or liable for treble damages if we are found to have willfully infringed a valid patent. Litigation results are
highly unpredictable and we or any collaborative partners may not prevail in any patent litigation or other
proceeding in which we may become involved. Any changes in, or unexpected interpretations of the patent laws
may adversely affect our ability to enforce our patent position. Uncertainties resulting from the initiation and
continuation of patent litigation or other proceedings could damage our ability to compete in the marketplace.

Our commercial success will depend in part on our ability to obtain and maintain protection of our
intellectual property in China.

We rely on trade secrets, proprietary know-how and other non-patentable technology, which we seek to
protect through agreements containing non-disclosure provisions with the chemists and biologists we have

25

engaged in China. We cannot assure you that these agreements will not be breached, that we will have adequate
remedies for any breach, or that our trade secrets, proprietary know-how and other non-patentable technology
will not otherwise become known to, or be independently developed by, our competitors.

Implementation and enforcement of Chinese intellectual property-related laws has historically been
deficient and ineffective, and is hampered by corruption and local protectionism. Accordingly, intellectual
property rights and confidentiality protections in China may not be as effective as in the United States or other
countries. Policing unauthorized use of proprietary technology is difficult and expensive, and we might need to
resort to litigation to enforce or defend patents issued to us or to determine the enforceability, scope and validity
of our proprietary rights or those of others. The experience and capabilities of Chinese courts in handling
intellectual property litigation varies, and outcomes are unpredictable. Further, such litigation may require
significant expenditure of cash and management efforts and could harm our business, financial condition and
results of operations. An adverse determination in any such litigation will impair our intellectual property rights
and may harm our business, prospects and reputation.

If we are unable to keep our trade secrets confidential, our technology and proprietary information may
be used by others to compete against us.

We rely significantly upon proprietary technology, information, processes and know-how that are not
subject to patent protection. We seek to protect this information through confidentiality and intellectual property
license or assignment provisions in agreements with our employees, consultants and other third-party contractors
as well as through other security measures. The confidentiality and intellectual property provisions of our
agreements and security measures may be breached, and we may not have adequate remedies for any such
breach. In addition, our trade secrets may otherwise become known or be independently developed by
competitors.

RISKS RELATING TO PRECLINICAL, CLINICAL AND REGULATORY MATTERS

If preclinical studies and clinical trials of our product candidates are not successful, and we or our current
or any planned collaborators are not able to obtain the necessary regulatory approvals, then we and such
collaborators will not be able to commercialize those product candidates on a timely basis, if at all, which
would adversely affect our future profitability and success.

In order to obtain regulatory approval for the commercial sale of our product candidates, we and any current
or planned collaborators will be required to complete extensive preclinical studies as well as clinical trials in
humans to demonstrate to the FDA and foreign regulatory authorities that our product candidates are safe and
effective. Development, including preclinical and clinical testing, is a long, expensive and uncertain process.
Accordingly, preclinical testing and clinical trials of our product candidates under development may not be
successful. We and any collaborators could experience delays or failures in preclinical or clinical trials of any of
our product candidates for a number of reasons. For example:

•

•

preclinical studies or clinical trials may produce negative, inconsistent or inconclusive results, and we or
any collaborators may decide, or regulators may require us, to conduct additional preclinical studies or
clinical trials or terminate testing for a particular product candidate;

the results from preclinical studies and early clinical trials may not be statistically significant or
predictive of results that will be obtained from expanded, advanced clinical trials;

• we may encounter difficulties or delays in manufacturing sufficient quantities of the product candidate

used in any preclinical study or clinical trial;

•

the timing and completion of clinical trials of our product candidates depend on, among other factors,
the number of patients we will be required to enroll in the clinical trials and the rate at which those
patients are enrolled, and any increase in the required number of patients, decrease in recruitment rates
or difficulties retaining study participants may result in increased costs, program delays or program
termination;

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•

•

our products under development may not be effective in treating any of our targeted disorders or may
prove to have undesirable or unintended side effects, toxicities or other characteristics that may prevent
or limit their commercial use;

institutional review boards or regulators, including the FDA, or any collaborators may hold, suspend or
terminate our clinical research or the clinical trials of our product candidates for various reasons,
including failure to achieve established success criteria, noncompliance with regulatory requirements or
if, in their opinion, the participating subjects are being exposed to unacceptable health risks; and

• we, along with any of our current or planned collaborators and subcontractors, may not employ, in any
capacity, persons who have been debarred under the FDA’s Application Integrity Policy. Employment
of such a debarred person may result in delays in FDA’s review or approval of our products, or the
rejection of data developed with the involvement of such person(s).

If the preclinical studies and/or clinical trials for any product candidates that we and any collaborators
pursue are not successful, then our ability to successfully develop and commercialize products on the basis of the
respective technologies will be materially adversely affected, our reputation and our ability to raise additional
capital will be materially impaired and the value of an investment in our stock price is likely to decline.

We have very limited experience in conducting clinical trials. We are currently recruiting clinical/
regulatory management but we expect to rely primarily on a combination of collaborative partners,
consultants and contract research organizations for the performance and management of any clinical
trials of our product candidates. If such third parties fail to perform then we will not be able to
successfully develop and commercialize product candidates and grow our business.

We have limited experience in conducting clinical trials. We expect to rely to varying degrees on third
parties to conduct our clinical trials and provide services in connection with such clinical trials. For example, we
have granted development and commercialization rights under our existing collaboration agreements and we
expect that any future collaboration partners may similarly be fully responsible for conducting clinical trials of
product candidates. In some instances, such as product candidates associated with new programs that
successfully advance into the clinic, we may be responsible for clinical trials. While we are currently seeking to
add clinical/regulatory employees, we expect that hiring such employees will be difficult since competition for
skilled clinical and regulatory employees is intense. In the near term, we are likely to rely primarily on third
parties such as consultants, contract research organizations and other similar entities to complete IND-enabling
preclinical studies, create and submit IND applications, enroll qualified subjects, conduct our clinical trials and
provide services in connection with such clinical
trials. Our reliance on these third parties for clinical
development activities will reduce our control over these activities. These third parties may not complete
activities on schedule, or may not conduct our clinical trials in accordance with regulatory requirements or the
trial design. If any such events were to occur, efforts to obtain regulatory approvals for and commercialize our
drug candidates may be delayed.

In addition, for those product candidates where we are responsible for clinical trials, we must ensure that
each such clinical trial is conducted in accordance with the general investigational plan and protocols for the trial.
The FDA requires us to comply with certain standards, referred to as good clinical practices, for conducting,
recording and reporting the results of clinical trials to assure that data and reported results are credible and
accurate and that the rights, integrity and confidentiality of trial participants are protected. Our reliance on third
parties that we do not control does not relieve us of these responsibilities and requirements. If any of the third-
party contractors on whom we may in the future rely do not comply with good clinical practices or other
applicable regulatory requirements, we may not be able to use the data and reported results from the trial. If this
were to occur, our efforts to obtain regulatory approvals for and commercialize our product candidates may be
delayed.

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The development process necessary to obtain regulatory approval is lengthy, complex and expensive. If we
and our current and planned collaborative partners do not obtain necessary regulatory approvals, then
our business will be unsuccessful and the market price of our common stock could substantially decline.

We and our current and planned collaborative partners will be required to obtain regulatory approval in
order to successfully advance our product candidates through the clinic and prior to marketing and selling such
products.

The process of obtaining FDA and other required regulatory approvals is expensive. The time required for
FDA and other approvals is uncertain and typically takes a number of years, depending on the complexity and
novelty of the product. With respect to internal programs to date, we have limited experience in filing and
prosecuting applications to obtain marketing approval.

Any regulatory approval to market a product may be subject to limitations on the indicated uses for which
we, or our collaborative partners, may market the product. These limitations may restrict the size of the market
for the product and affect reimbursement by third-party payors. In addition, regulatory agencies may not grant
approvals on a timely basis or may revoke or significantly modify previously granted approvals.

We are subject to, and our current and planned collaborative partners are, or will be subject to, numerous
foreign regulatory requirements governing the manufacturing and marketing of our potential future products
outside of the United States. The approval procedure varies among countries, additional testing may be required
in some jurisdictions, and the time required to obtain foreign approvals often differs from that required to obtain
FDA approvals. Moreover, approval by the FDA does not ensure approval by regulatory authorities in other
countries, and vice versa.

In addition, regulatory agencies may change existing requirements or adopt new requirements or policies.
We and any collaborative partners may be slow to adapt or may not be able to adapt to these changes or new
requirements.

As a result of these factors, we and any collaborators may not successfully begin or complete clinical trials
and/or obtain regulatory approval to market and sell our product candidates in the time periods estimated, if at
all. Moreover, if we or any collaborators incur costs and delays in development programs or fail to successfully
develop and commercialize products based upon our technologies, we may not become profitable and our stock
price could decline.

Recently enacted legislation may make it more difficult and costly for us to obtain regulatory approval of
our product candidates and to produce, market and distribute products after approval.

On September 27, 2007, the President signed the FDAAA. The FDAAA grants a variety of new powers to
the FDA, many of which are aimed at improving the safety of drug products before and after approval. Under the
FDAAA, companies that violate the new law are subject to substantial civil monetary penalties. While we expect
the FDAAA to have a substantial effect on the pharmaceutical industry, the extent of that effect is not yet known.
As the FDA issues regulations, guidance and interpretations relating to the new legislation, the impact on the
industry, as well as our business, will become clearer. The new requirements and other changes that the FDAAA
imposes may make it more difficult, and likely more costly, to obtain approval of new pharmaceutical products
and to produce, market and distribute products after approval.

Even if marketing approval is obtained, any products we or any current or planned collaborators develop
will be subject to ongoing regulatory oversight, which may affect the successful commercialization of such
products.

Even if we or any current or planned collaborators obtain regulatory approval of a product candidate, the
approval may be subject to limitations on the indicated uses for which the product is marketed or require costly
post-marketing follow-up studies. After marketing approval for any product is obtained, the manufacturer and the

28

manufacturing facilities for that product will be subject to continual review and periodic inspections by the FDA
and other regulatory agencies. The subsequent discovery of previously unknown problems with the product, or
with the manufacturer or facility, may result in restrictions on the product or manufacturer, including withdrawal
of the product from the market.

If there is a failure to comply with applicable regulatory requirements, we or any collaborator may be
subject to fines, refusal to approve pending applications or supplements, suspension or withdrawal of regulatory
approvals, product recalls, seizure of products, operating restrictions, refusal to permit the import or export of our
products and criminal prosecution.

We and any current or planned collaborators are subject to governmental regulations other than those
imposed by the FDA. We and any such collaborators may not be able to comply with these regulations,
which could subject us, or such collaborators, to penalties and otherwise result in the limitation of our or
such collaborators’ operations.

In addition to regulations imposed by the FDA, we and any current or planned collaborators are subject to
regulation under, among other laws, the Occupational Safety and Health Act, the Environmental Protection Act,
the Research Conservation and Recovery Act, as well as regulations
the Toxic Substances Control Act,
administered by the Nuclear Regulatory Commission, national restrictions on technology transfer, import, export
and customs regulations and certain other local, state or federal regulations. From time to time, other federal
agencies and congressional committees have indicated an interest
in implementing further regulation of
pharmaceutical and biotechnology applications. We are not able to predict whether any such regulations will be
adopted or whether, if adopted, such regulations will apply to our business, or whether we or our collaborators
would be able to comply with any applicable regulations.

Our research and development activities involve the controlled use of hazardous materials and chemicals.
Although we believe that our safety procedures for handling and disposing of such materials comply with all
applicable laws and regulations, we cannot completely eliminate the risk of accidental contamination or injury
caused by these materials.

RISKS RELATING TO MANUFACTURING AND SALES

We will depend on collaborators and third-party manufacturers to produce most, if not all, of our
products under development, and if these third parties do not successfully manufacture these products,
our business will be harmed.

We have no manufacturing experience or manufacturing capabilities. In order to continue to develop
product candidates, apply for regulatory approvals, and commercialize our products under development, we or
any collaborators must be able to manufacture products in adequate clinical and commercial quantities, in
compliance with regulatory requirements, including those related to quality control and quality assurance, at
acceptable costs and in a timely manner. The manufacture of our product candidates may be complex, difficult to
accomplish and difficult to scale-up when large-scale production is required. Manufacture may be subject to
delays, inefficiencies and poor or low yields of quality products. The cost of manufacturing some of our products
may make them prohibitively expensive. If supplies of any of our product candidates or related materials become
unavailable or are not delivered on a timely basis or at all, or are contaminated or otherwise lost, certain
preclinical studies and/or clinical trials by us and any collaborators could be seriously delayed. This is due to the
fact that such materials are time-consuming to manufacture and cannot be readily obtained from third-party
sources.

To the extent that we or any collaborators seek to enter into manufacturing arrangements with third parties,
we and such collaborators will depend upon these third parties to perform their obligations in a timely and
effective manner and in accordance with government regulations. Contract manufacturers may breach their
manufacturing agreements because of factors beyond our control or may terminate or fail
to renew a
manufacturing agreement based on their own business priorities at a time that is costly or inconvenient for us.

29

Any contract manufacturers with which we enter into manufacturing arrangements will be subject to
ongoing periodic, unannounced inspection by the FDA and corresponding state and foreign agencies or their
designees to ensure strict compliance with current good manufacturing practices and other governmental
regulations and corresponding foreign standards. Any failure by our contract manufacturers, any collaborators or
us to comply with applicable regulations could result in sanctions being imposed, including fines, injunctions,
civil penalties, failure of regulatory authorities to grant marketing approval of our product candidates, delays,
suspension or withdrawal of approvals, seizures or recalls of product candidates, operating restrictions and
criminal prosecutions, any of which could significantly and adversely affect our business. If we need to change
manufacturers, the FDA and corresponding foreign regulatory agencies must approve any new manufacturers in
advance. This would involve testing and pre-approval inspections to ensure compliance with FDA and foreign
regulations and standards.

If third-party manufacturers fail to perform their obligations, our competitive position and ability to generate

revenue may be adversely affected in a number of ways, including;

• we and any collaborators may not be able to initiate or continue certain preclinical and/or clinical trials

of products that are under development;

• we and any collaborators may be delayed in submitting applications for regulatory approvals for our

product candidates; and

• we and any collaborators may not be able to meet commercial demands for any approved products.

We have no sales or marketing experience and, as such, will depend significantly on third parties who may
not successfully sell our products.

We have no sales, marketing or product distribution experience. If we receive required regulatory approvals,
we plan to rely primarily on sales, marketing and distribution arrangements with third parties, including our
collaborative partners. For example, as part of our agreements with Genentech, we have granted Genentech the
exclusive rights to distribute certain products resulting from such collaborations, if any are ever successfully
developed. We may have to enter into additional marketing arrangements in the future and we may not be able to
enter into these additional arrangements on terms that are favorable to us, if at all. In addition, we may have
limited or no control over the sales, marketing and distribution activities of these third parties and sales through
these third parties could be less profitable to us than direct sales. These third parties could sell competing
products and may devote insufficient sales efforts to our products. Our future revenues will be materially
dependent upon the success of the efforts of these third parties.

We may seek to independently market products that are not already subject to marketing agreements with
other parties. If we determine to perform sales, marketing and distribution functions ourselves, we could face a
number of additional risks, including:

• we may not be able to attract and build a significant and skilled marketing staff or sales force;

•

•

the cost of establishing a marketing staff or sales force may not be justifiable in light of the revenues
generated by any particular product; and

our direct sales and marketing efforts may not be successful.

Even if we successfully commercialize any products under development, either alone or in collaboration,
we face uncertainty with respect to coverage, pricing, third-party reimbursements and healthcare reform,
all of which could affect our future profitability.

Our ability to collect significant royalties from our products may depend on our ability, and the ability of
any current or planned collaboration partners or customers, to obtain adequate levels of coverage for our products
and reimbursement from third-party payers such as:

•

government health administration authorities;

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•

•

•

•

•

private health insurers;

health maintenance organizations;

health maintenance organizations;

pharmacy benefit management companies; and

other healthcare-related organizations.

Third-party payers may deny coverage or offer inadequate levels of reimbursement if they determine that a
prescribed product has not received appropriate clearances from the FDA or other government regulators, is not
used in accordance with cost-effective treatment methods as determined by the third-party payer, or is
experimental, unnecessary or inappropriate. If third-party payers deny coverage or offer inadequate levels of
reimbursement, we or any collaborators may not be able to market our products effectively. We also face the risk
that we will have to offer our products at prices lower than anticipated as a result of the current trend in the
United States towards managed healthcare through health maintenance organizations. Currently, third-party
payers are increasingly challenging the prices charged for medical products and services. Prices could be driven
down by health maintenance organizations that control or significantly influence purchases of healthcare services
and products. Existing U.S. laws, such as the Medicare Prescription Drug, Improvement, and Modernization Act
of 2003, or future legislation to reform healthcare or reduce government insurance programs could also adversely
affect prices of our approved products, if any. The cost-containment measures that healthcare providers are
instituting and the results of potential healthcare reforms may prevent us from maintaining prices for our
products that are sufficient for us to realize profits and may otherwise significantly harm our business, financial
condition and operating results. In addition, to the extent that our products are marketed outside of the United
States, foreign government pricing controls and other regulations may prevent us from maintaining prices for our
products that are sufficient for us to realize profits and may otherwise significantly harm our business, financial
condition and operating results.

Recent proposed legislation may permit re-importation of drugs from foreign countries into the United
States, including foreign countries where the drugs are sold at lower prices than in the United States,
which could force us to lower the prices at which we sell our products, if approved, and impair our ability
to derive revenue from these products.

Legislation has been introduced in the U.S. Congress that, if enacted, would permit more widespread
re-importation of drugs from foreign countries into the United States. This could include re-importation from
foreign countries where the drugs are sold at lower prices than in the United States. Such legislation, or similar
regulatory changes, could lead to a decrease in the price we receive for any approved products, which, in turn,
could impair our ability to generate revenue. Alternatively, in response to legislation such as this, we might elect
not to seek approval for or market our products in foreign jurisdictions in order to minimize the risk of
re-importation, which could also reduce the revenue we generate from our product sales.

RISKS RELATED TO OUR COMMON STOCK

If we fail to meet the requirements for continued listing on the Nasdaq Global Market, our common stock
could be delisted from trading, which would adversely affect the liquidity of our common stock and our
ability to raise additional capital.

Our common stock is currently listed for quotation on the Nasdaq Global Market. We are required to meet
specified financial requirements in order to maintain our listing on the Nasdaq Global Market. One such
requirement is that we maintain a minimum closing bid price of at least $1.00 per share for our common stock.
Our common stock has recently closed at prices that are below the minimum bid price requirement. If our stock
price falls below $1.00 per share for 30 consecutive business days, we will receive a deficiency notice from
Nasdaq advising us that we have 180 days to regain compliance by maintaining a minimum bid price of at least
$1.00 for a minimum of ten consecutive business days. Under certain circumstances, Nasdaq could require that

31

the minimum bid price exceed $1.00 for more than ten consecutive days before determining that a company
complies with its continued listing standards. If in the future we fail to satisfy the Nasdaq Global Market’s
continued listing requirements, our common stock could be delisted from the Nasdaq Global Market, in which
case we may transfer to the Nasdaq Capital Market, which generally has lower financial requirements for initial
listing or, if we fail to meet its listing requirements, the OTC Bulletin Board. Any potential delisting of our
common stock from the Nasdaq Global Market would make it more difficult for our stockholders to sell our
stock in the public market and would likely result in decreased liquidity and increased volatility for our common
stock.

Our stock price may fluctuate significantly and the market price of our common stock could drop below
the price paid.

The trading price of our common stock has been volatile and may continue to be volatile in the future. For
example, our stock has traded as high as $6.59 and as low as $0.86 per share for the period January 1, 2004
through December 31, 2007. The stock market, particularly in recent years, has experienced significant volatility
with respect
to pharmaceutical- and biotechnology-based company stocks. Prices for our stock will be
determined in the marketplace and may be influenced by many factors, including:

•

announcements regarding new technologies by us or our competitors;

• market conditions in the biotechnology and pharmaceutical sectors;

•

•

•

•

•

•

•

•

•

•

•

•

•

•

rumors relating to us or our competitors;

litigation or public concern about the safety of our potential products;

actual or anticipated variations in our quarterly operating results and any subsequent restatement of such
results;

actual or anticipated changes to our research and development plans;

deviations in our operating results from the estimates of securities analysts;

entering into new collaboration agreements or termination of existing collaboration agreements;

adverse results or delays in clinical trials being conducted by us or any collaborators;

any intellectual property or other lawsuits involving us;

third-party sales of large blocks of our common stock;

sales of our common stock by our executive officers, directors or significant stockholders;

equity sales by us of our common stock to fund our operations;

the loss of any of our key scientific or management personnel;

FDA or international regulatory actions; and

general market conditions.

While we cannot predict the individual effect that these factors may have on the price of our common stock,
these factors, either individually or in the aggregate, could result in significant variations in price during any
given period of time. Moreover, in the past, securities class action litigation has often been instituted against
companies following periods of volatility in their stock price. This type of litigation could result in substantial
costs and divert our management’s attention and resources.

Substantially all of our outstanding common stock may be sold into the market at any time. This could
cause the market price of our common stock to drop significantly.

As of December 31, 2007, we had outstanding approximately 63.2 million shares of common stock, most of
which can be traded without restriction at any time. Sales of a substantial number of shares of our common stock
in the public market could occur at any time. These sales, or the perception in the market that the holders of a

32

large number of shares intend to sell such shares, could reduce the market price of our common stock. In
addition, we have a significant number of shares that are subject to outstanding options and warrants. The
exercise of these options and warrants and the subsequent sale of the underlying common stock could cause a
further decline in our stock price. These sales also might make it difficult for us to sell equity securities in the
future at a time and at a price that we deem appropriate.

Insiders have substantial control over us and could delay or prevent a change in corporate control.

As of December 31, 2007, our directors, executive officers and principal stockholders, together with their
affiliates, owned, in the aggregate, approximately 40% of our outstanding common stock. As a result, these
stockholders, if acting together, may have the ability to determine the outcome of matters submitted to our
stockholders for approval, including the election and removal of directors and any merger, consolidation or sale
of all or substantially all of our assets. In addition, these persons, if acting together, will have the ability to
control the management and affairs of our company. Accordingly, this concentration of ownership may harm the
market price of our common stock by:

•

•

•

delaying, deferring or preventing a change in control of our company;

impeding a merger, consolidation, takeover or other business combination involving our company; or

discouraging a potential acquirer from making a tender offer or otherwise attempting to obtain control of
our company.

We have anti-takeover defenses that could delay or prevent an acquisition that our stockholders may
consider favorable and the market price of our common stock may be lower as a result.

Provisions of our certificate of incorporation, our bylaws and Delaware law may have the effect of deterring
unsolicited takeovers or delaying or preventing changes in control of our management, including transactions in
which our stockholders might otherwise receive a premium for their shares over then current market prices. In
addition, these provisions may limit the ability of stockholders to approve transactions that they may deem to be
in their best interest. For example, we have divided our board of directors into three classes that serve staggered
three-year terms, we may issue shares of our authorized “blank check” preferred stock and our stockholders are
limited in their ability to call special stockholder meetings.

In addition, we are subject to the anti-takeover provisions of Section 203 of the Delaware General
Corporation Law, which prohibits a publicly-held Delaware corporation from engaging in a business
combination with an interested stockholder, generally a person which together with its affiliates owns, or within
the last three years has owned, 15% of our voting stock, for a period of three years after the date of the
transaction in which the person became an interested stockholder, unless the business combination is approved in
a prescribed manner. These provisions could discourage, delay or prevent a change in control transaction.

ITEM 1B. UNRESOLVED STAFF COMMENTS

None.

ITEM 2.

PROPERTIES

We currently lease a facility for our administrative, research and development requirements located at 45
Moulton Street in Cambridge, Massachusetts consisting of 35,095 square feet pursuant to a lease that expires in
2010. We also have the right to extend our lease term for two additional terms of three years each, with the first
such additional term commencing as of January 1, 2011 and expiring as of December 31, 2013 and the second
such additional term commencing as of January 1, 2014 and expiring as of December 31, 2016. We believe that
our existing facilities will be suitable and adequate to meet our needs for the foreseeable future.

ITEM 3.

LEGAL PROCEEDINGS

We are currently not a party to any material legal proceedings.

33

ITEM 4.

SUBMISSION OF MATTERS TO A VOTE OF SECURITY HOLDERS

We did not submit any matter to a vote of security holders during the fourth quarter of the fiscal year

covered by this annual report.

EXECUTIVE OFFICERS OF THE REGISTRANT

Our executive officers are as follows:

Name

Age

Position

Daniel R. Passeri, MSc., J.D.

. . . .

Michael P. Gray . . . . . . . . . . . . . .

Mark W. Noel . . . . . . . . . . . . . . . .

47

37

49

President and Chief Executive Officer

Chief Operating Officer and Chief Financial Officer

Vice President, Technology Management and Business
Development

Changgeng Qian, Ph.D., M.D.

. . .

52

Vice President, Discovery and Preclinical Research

Daniel R. Passeri, MSc., J.D.

. . . . Mr. Passeri has served as our President and Chief Executive
Officer and as a director
since September 2001. From
November 2000 to September 2001, Mr. Passeri served as
Senior Vice President, Corporate Development and Strategic
Planning of the Company. From March 1997 to November
2000, Mr. Passeri was employed by GeneLogic Inc., a
biotechnology company, most recently as Senior Vice President,
Corporate Development and Strategic Planning. From February
1995 to March 1997, Mr. Passeri was employed by Boehringer
Mannheim, a pharmaceutical, biotechnology and diagnostic
company, as Director of Technology Management. Mr. Passeri
is a graduate of the National Law Center at George Washington
University, with a J.D., of the Imperial College of Science,
Technology and Medicine at the University of London, with an
M.Sc. in biotechnology, and of Northeastern University, with a
B.S. in biology.

Michael P. Gray . . . . . . . . . . . . . . Mr. Gray has served as our Chief Operating Officer and Chief
Financial Officer since December 2006. From December 2003
until December 2006, Mr. Gray served as our Vice President of
Finance and Chief Financial Officer and served as our Senior
Director of Finance and Controller from August 2000 until
December 2003. From January 1998 to July 2000, Mr. Gray was
Controller at Reprogenesis, Inc., a predecessor biotechnology
company. Mr. Gray previously served as an audit professional
for the accounting and consulting firm of Ernst & Young, LLP.
Mr. Gray is a certified public accountant, holds an M.B.A. from
the F.W. Olin Graduate School of Business at Babson College,
and has a B.S. in accounting from Bryant College.

34

Mark W. Noel . . . . . . . . . . . . . . . . Mr. Noel has served as our Vice President, Technology
Management and Business Development since March 2001.
From March 2000 to February 2001, Mr. Noel was employed by
GeneLogic, as Vice President of Customer Relations. From
January 1998 to February 2000, Mr. Noel was employed by
GeneLogic as Senior Director of Program Management. From
December 1993 to January 1998, Mr. Noel was employed by the
National Cancer Institute’s Office of Technology Development
(now the Technology Transfer Branch of the NCI Office of
Technology and Industrial Relations), where from July 1997 to
January 1998, he served as Acting Deputy Director. From
February 1989 to November 1993, Mr. Noel worked as a patent
agent at Gist Brocades NV, a supplier of ingredients to the
pharmaceutical and food sectors. Mr. Noel holds a B.S. from the
University of Maryland.

Changgeng Qian, Ph.D., M.D.

. . .

Dr. Qian has served as our Vice President, Discovery and
Preclinical Research since September 2006. From May 2005 to
September 2006, Dr. Qian served as our Senior Director,
Pharmacology. From May 2002 to May 2005 Dr. Qian served as
our Director, Pharmacology, and from May 2001 to May 2002,
Dr. Qian served as our Associate Director, Pharmacology. From
November 1999 to May 2001, Dr. Qian was Senior Scientist II
at Millennium Pharmaceuticals,
Inc., a biopharmaceutical
company. From October 1996 to November 1999, Dr. Qian was
a
Senior Research
biopharmaceutical company that was acquired by Millennium
Pharmaceuticals in December 1999. From January 1992 to
December 1995, Dr. Qian was Head of Pharmacology at
CytoMed, Inc., a biopharmaceutical company. Dr. Qian holds a
Ph.D. in Pharmacology and an M.D. from the Hunan Medical
University in Changsha, China and has served as a professor of
the Hunan Medical University since 1992.

at LeukoSite,

Scientist

Inc.,

III

35

PART II

ITEM 5. MARKET FOR REGISTRANT’S COMMON EQUITY AND RELATED STOCKHOLDERS

MATTERS AND ISSUER PURCHASES OF EQUITY SECURITIES

(a) Market Information. Our common stock is traded on the NASDAQ Global Market under the trading
symbol “CRIS.” The following table sets forth, for the fiscal periods indicated, the high and low sales prices per
share of our common stock as reported on the NASDAQ Global Market:

Year ended December 31, 2006

. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
First Quarter
Second Quarter . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Third Quarter . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Fourth Quarter . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

Year ended December 31, 2007

First Quarter
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Second Quarter . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Third Quarter . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Fourth Quarter . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

Curis
Common Stock

High

Low

$4.10
$2.43
$1.98
$1.95

$1.72
$2.35
$1.31
$1.20

$2.28
$1.21
$0.91
$1.11

$1.15
$1.13
$0.93
$0.86

(b) Holders. On March 12, 2008, the last reported sale price of our common stock on the NASDAQ
Global Market was $1.17 and there were 302 holders of record of our common stock. The number of record
holders may not be representative of the number of beneficial owners because many of the shares of our common
stock are held by depositories, brokers or other nominees.

(c) Dividends. We have never declared or paid any cash dividends on our common stock. We currently
intend to retain earnings, if any, to support our business strategy and do not anticipate paying cash dividends in
the foreseeable future. Payment of future dividends, if any, will be at the sole discretion of our board of directors
after taking into account various factors, including our financial condition, operating results, capital requirements
and any plans for expansion.

(e) Performance Graph.

The graph below compares the cumulative total stockholder return on the
common stock for the period from December 31, 2002 through December 31, 2007, with the cumulative total
return on (i) NASDAQ Market Index—U.S. Companies, (ii) NASDAQ Pharmaceutical Index and (iii) NASDAQ
Biotechnology Index. The comparison assumes investment of $100 on December 31, 2002 in our common stock
and in each of the indices and, in each case, assumes reinvestment of all dividends.

36

600

500

400

300

200

100

0
2002

COMPARISON OF CUMULATIVE TOTAL RETURN AMONG
CURIS INCORPORATED,
 NASDAQ MARKET INDEX-U.S. COS. AND PEER GROUP INDEX

2003

2004

2005

2006

2007

CURIS INCORPORATED

NASDAQ PHARMACEUTICAL INDEX

NASDAQ MARKET INDEX-U.S. COS.

NASDAQ BIOTECHNOLOGY INDEX

CURIS, INC. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
NASDAQ PHARMACEUTICAL INDEX . . . . . . . . . . .
NASDAQ MARKET INDEX-U.S. COS. . . . . . . . . . . . .
NASDAQ BIOTECHNOLOGY INDEX . . . . . . . . . . . .

100.00
100.00
100.00
100.00

436.89
144.26
152.01
146.47

506.80
155.92
165.75
160.84

345.63
171.94
171.72
188.04

122.33
172.43
192.65
185.31

95.15
168.33
211.26
183.07

12/31/02

12/31/03

12/31/04

12/31/05

12/31/06

12/31/07

37

ITEM 6.

SELECTED FINANCIAL DATA

The selected consolidated financial data set forth below have been derived from our consolidated financial
statements. These historical results are not necessarily indicative of results to be expected for any future period.
You should read the data set forth below in conjunction with “Management’s Discussion and Analysis of
Financial Condition and Results of Operations” and the consolidated financial statements and related notes
included elsewhere in this report.

Year Ended December 31,

2007

2006

2005

2004

2003

(in thousands, except per share data)

Consolidated Statement of Operations Data:
Revenues:

Research and development contracts and government

grants . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
License and maintenance fees(1) . . . . . . . . . . . . . . . . . . .
Substantive milestones(2) . . . . . . . . . . . . . . . . . . . . . . . .
Contra-revenues . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

$

Net revenues . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

Costs and expenses:

Research and development. . . . . . . . . . . . . . . . . . . . . . . .
General and administrative. . . . . . . . . . . . . . . . . . . . . . . .
Amortization of intangible assets . . . . . . . . . . . . . . . . . .

Total costs and expenses . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

3,262
13,127
—
—

16,389

14,779
9,984
—

24,763

$

$

9,340
4,324
3,000
(1,728)

$ 10,493
2,258
250
(6,999)

14,936

6,002

14,590
10,374
27

24,991

13,705
8,090
75

21,870

3,407
242
50
—

3,699

12,662
7,757
75

20,494

$

1,629
8,749
—
—

10,378

14,388
6,883
75

21,346

Loss from operations . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

(8,374)

(10,055)

(15,868)

(16,795)

(10,968)

Other income (expense):

Interest and other income (expense) . . . . . . . . . . . . . . . .
Interest expense . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

Total other income (expense), net . . . . . . . . . . . . . . . . . .

Net loss . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Accretion on Series A Redeemable Preferred Stock . . . . . . ..

Net loss applicable to common stockholders . . . . . . . . . . . . . .

Basic and diluted net loss per common share . . . . . . . . . . . . .

1,495
(85)

1,410

(6,964)
—

1,422
(196)

1,226

(8,829)
—

1,321
(308)

1,013

2,131
(411)

1,720

(14,855)

(15,075)

—

—

(1,017)
(694)

(1,711)

(12,679)
(271)

(6,964) $

(8,829) $ (14,855) $ (15,075) $ (12,950)

(0.13) $

(0.18) $

(0.31) $

(0.35) $

(0.36)

$

$

Weighted average common shares (basic and diluted) . . . . . .

54,915

49,067

48,074

42,686

36,016

(in thousands)
As of December 31,

2007

2006

2005

2004

2003

Consolidated Balance Sheet Data:
Cash, cash equivalents and marketable securities . . . . . . . . . .
Working capital . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Long-term investment—restricted . . . . . . . . . . . . . . . . . . . . . .
Total assets . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Debt and lease obligations . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Convertible notes payable . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Accumulated deficit . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Total stockholders’ equity . . . . . . . . . . . . . . . . . . . . . . . . . . . .

$ 41,459
35,410
210
53,817
404
—
(695,848)
46,845

$ 36,656
32,521
202
52,268
1,980
—
(688,883)
35,897

$ 44,209
36,010
196
60,914
3,227
2,605
(680,054)
38,000

$ 49,514
46,854
193
67,332
—
5,710
(665,199)
48,312

$ 35,148
33,376
191
51,450
—
5,334
(650,124)
39,300

(1) During the year ended December 31, 2007, we recognized $10,509,000 of revenue recognized under the Genentech June
2003 collaboration, which includes $7,509,000 in previously deferred revenue and $3,000,000 for a contingent cash
payment that we received in October 2007.

(2) During the years ended December 31, 2006, we recognized $3,000,000 as substantive milestone revenue under our June
2003 Hedgehog antagonist collaboration with Genentech. In 2005, we recognized $250,000 under our January 2004
Hedgehog agonist collaboration with Wyeth.

38

ITEM 7. MANAGEMENT’S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND

RESULTS OF OPERATIONS

The following discussion and analysis of financial condition and results of operations should be read
together with “Selected Financial Data,” and our financial statements and accompanying notes appearing
elsewhere in this annual report on Form 10-K. This discussion contains forward-looking statements, based on
current expectations and related to future events and our future financial performance, that involve risks and
uncertainties. Our actual results may differ materially from those anticipated in these forward-looking
statements as a result of many important factors, including those set forth under Item 1A, “Risk Factors” and
elsewhere in this report.

Overview

We are a drug discovery and development company that is committed to leveraging our innovative signaling
pathway drug technologies in seeking to create new medicines, primarily for cancer. In expanding our drug
development efforts in the field of cancer through our targeted cancer drug development platform, we are
building upon our past experiences in targeting signaling pathways in the areas of cancer, neurological disease
and cardiovascular disease.

We seek to conduct research programs both internally and through strategic collaborations. Our most
advanced program is our Hedgehog antagonist program that is under collaboration with Genentech. In January
2007, Genentech began a phase I clinical trial to test GDC-0449, a systemically administered Hedgehog
antagonist, in cancers. The primary objectives of the phase I clinical trial are to evaluate the safety and
tolerability of escalating doses of GDC-0449 and to establish the maximum tolerated dose and dose limiting
toxicities. In October 2007, Genentech notified us that these initial objectives were achieved and that Genentech
had initiated a Phase I clinical trial expansion cohort to enroll additional patients with advanced basal cell
carcinoma to assess preliminary signs of biological activity as well as to continue the accumulation of phase I
safety data. Genentech has indicated that it expects to present more comprehensive phase I data at an upcoming
scientific conference. Genentech also has indicated that it plans to initiate three phase II clinical trials of
GDC-0449 in 2008, which include a phase II trial in metastatic colorectal cancer during the first quarter of 2008
and trials in advanced basal cell carcinoma and in an undisclosed advanced solid tumor of epithelial origin during
the second half of 2008.

Our internal drug development efforts are focused on our proprietary targeted cancer drug development
platform. This platform focuses on the development of single agent drug candidates targeting one or more
molecular components within the signaling pathways associated with certain cancers. These programs are
primarily focused on developing a number of proprietary, small molecule, single agent, multi-targeted inhibitor
drug compounds, including CUDC-101, the first drug candidate selected as a development candidate from this
platform. Each proprietary compound is being designed to inhibit validated cancer targets, including the
epidermal growth factor receptor (EGFR), vascular endothelial growth factor receptor (VEGFR), heat shock
protein 90 (Hsp90), epidermal growth factor 2 (Her2) and in combination with inhibition of histone deacetylase,
or HDAC, which is a validated non-kinase cancer target. We are also seeking to use this platform to develop
proprietary single agent, single target drug candidates for cancer indications, including an Hsp90 inhibitor.
CUDC-101, our lead drug candidate under internal development, is being designed as a first-in-class therapeutic
to inhibit HDAC, EGFR and Her2. In preclinical studies, we have demonstrated that CUDC-101 inhibits all three
molecular targets resulting in the potent killing of a wide range of cancer cell lines that are representative of a
variety of human cancer types, many of which have demonstrated resistance to various approved targeted agents.
We have been actively working toward our goal of filing an IND for CUDC-101, and expect to do so early in the
second quarter of 2008.

In furtherance of the development of our targeted cancer drug development platform, since May 2006, we
have outsourced certain medicinal chemistry-based research functions to a leading provider of such services in
Shanghai, China. More recently, we have engaged another provider in Beijing, China to perform certain biology-
based research functions. We have developed these relationships with Chinese providers to support our U.S.
operations and we are currently engaging a total of 27 chemists and six biologists in China.

39

Since our inception, we have funded our operations primarily through license fees, research and
development funding from our strategic collaborators, the private and public placement of our equity securities,
debt financings and the monetization of certain royalty rights. We have never been profitable and have incurred
an accumulated deficit of $695,848,000 as of December 31, 2007. We expect to incur significant operating losses
for the next several years as we devote substantially all of our resources to our research and development
programs. We will need to generate significant revenues to achieve profitability and do not expect to achieve
profitability in the foreseeable future, if at all. We believe that key drivers to our success will include our ability
to:

•

•

•

•

successfully file an IND and advance CUDC-101 into clinical testing in 2008;

advance the preclinical development of other small molecule cancer drug candidates that we are
developing under our targeted cancer drug development platform;

commence and complete clinical trials, both for our internally developed programs, our Hedgehog small
molecule antagonist program being studied in phase I clinical trials by our collaborator, Genentech, and
any future programs we may pursue in collaboration with others in the future; and

successfully commercialize products on the basis of our and any current or planned collaborators’ drug
development programs.

Going forward, we intend to add clinical development and regulatory capacities in 2008 and we will seek to
advance one or more of our proprietary multi-targeted cancer programs into early stages of clinical testing. We
also plan to continue to seek corporate collaborators for the further development and commercialization of at
least one of our multi-targeted cancer programs from our targeted cancer drug development platform. When
evaluating potential collaborative opportunities, we plan to seek to retain significant rights and involvement or
control in at least the early stages of clinical development.

Strategic Collaborations

Since inception, substantially all of our revenues have been derived from collaborations and other research
and development arrangements with third parties. We are currently a party to a June 2003 collaboration with
Genentech relating to our Hedgehog signaling pathway antagonist
technologies and to an April 2005
collaboration with Genentech relating to the Wnt signaling pathway.

Our current collaboration agreements are summarized as follows:

Genentech Hedgehog Antagonist Collaboration.

In June 2003, we established a collaboration with
Genentech that included continued development of our systemically administered Hedgehog antagonist drug
candidates for the treatment of cancer. Genentech is a biotechnology company with broad expertise in the
development of cancer therapeutics. Under the terms of the agreement, we granted Genentech an exclusive,
royalty-bearing license, with the right to sublicense, to make, use, sell and import, small molecule and antibody
inhibitors of the Hedgehog signaling pathway, for applications in cancer therapy. We had responsibilities to
perform certain funded preclinical research activities and, to the extent relevant, co-fund clinical development
costs for certain products. Genentech has primary responsibility for clinical development, regulatory affairs,
manufacturing and supply, formulation and sales and marketing.

Pursuant to the collaboration agreement, Genentech made up-front payments of $8,500,000, which consisted
of a $3,509,000 non-refundable license fee payment and a payment of $4,991,000 in exchange for 1,323,835
shares of our common stock. Genentech also made license maintenance fee payments totaling $4,000,000 over
the first two years of the collaboration. We have entered into three amendments to the June 2003 collaboration
agreement. Pursuant to the amendments, Genentech increased its funded research commitment and extended its
funding obligation through December 2006. As part of these amendments, Genentech provided us with
$5,846,000 in incremental research funding over the period from December 2004 to December 2006. All

40

research funding ended in December 2006, and we do not expect to receive additional future research funding
from Genentech or incur any material research costs related to this program. In October 2006, Genentech filed an
IND application for which we received a $3,000,000 cash payment. Assuming that Genentech proceeds with
three Phase II clinical trials in 2008 as planned, in connection with the treatment of the first patient in the Phase
II colorectal cancer trial, we have the right to receive a $3,000,000 cash payment from Genentech. We also have
the right to receive an additional $3,000,000 cash payment upon initiation of the Phase II testing of the
undisclosed advanced epithelial solid tumor. We have already received a $3,000,000 cash payment for the
initiation of Phase II testing in advanced basal cell carcinoma. Genentech had determined that it was obligated to
make this payment since the Phase I clinical trial expansion cohort in advanced basal cell carcinoma, which was
initiated in October 2007, satisfied the criteria for a Phase II clinical trial under the parties’ collaboration
agreement. We are eligible to receive additional payments upon the achievement of further development
milestones in this indication. In addition to these payments, we will be eligible to receive cash payments from
Genentech only upon the achievement of additional specified clinical development objectives as well as royalties
on product sales if any Hedgehog systemic antagonist products are successfully developed and commercialized.
Should the current drug candidate successfully continue its development into subsequent stages of clinical testing
and regulatory approval, we would be eligible to receive additional cash milestone payments.

As a result of our licensing agreements with various universities, we are obligated to make payments to
these university licensors when we receive certain payments from Genentech. To date, we have made an
aggregate of $300,000 in such payments.

Genentech Wnt Pathway Collaboration.

In April 2005, we entered into a collaboration agreement with
Genentech for discovery and development of small molecule compounds that modulate the Wnt signaling
pathway. Under the terms of the agreement, we granted Genentech an exclusive royalty-bearing license to make,
use and sell the small molecule compounds that are modulators of the Wnt pathway. Genentech paid us an
up-front license fee of $3,000,000 and has also funded $5,270,000 for research and development activities during
the two-year research term, which ended in March 2007. Beginning April 2007, Genentech assumed further
responsibility for any future development of this program. Genentech has also agreed to make cash payments to
us that are contingent upon the successful achievement of certain research, development, clinical and drug
approval objectives. Genentech has also agreed to pay us royalties on net product sales if product candidates
derived from the collaboration are successfully commercialized. If Genentech does not advance drug candidates
generated under this collaboration beyond the discovery research stage, we are not entitled to receive any future
cash payments under this collaboration. We can not predict whether Genentech will continue to pursue the
development of drug candidates under the agreement or whether any development objectives for which we may
be entitled to a cash payment will be achieved.

Stryker Corporation BMP Assignment and Sale

In December 2007, we sold and assigned our bone morphogenetic protein, or BMP, technologies to Stryker
Corporation. Under the agreement, Stryker paid us $1,750,000 in exchange for the sale and assignment of all of
our remaining BMP assets. As a result of the transaction, Stryker will assume all future costs subsequent to the
December 26, 2007 effective date related to future development activities, as well as to the maintenance and
prosecution of the patent portfolio. Under the terms of the agreements, we are entitled to contingent cash
payments related to certain clinical development and sales objectives, if achieved. We can not predict whether
any development objectives under this agreement for which we may be entitled to a contingent cash payment will
be achieved.

Recent Development—Wyeth Pharmaceuticals

On March 10, 2008, we announced that Wyeth Pharmaceuticals has decided that it will no longer pursue its
development efforts on our Hedgehog agonist program and will terminate its January 2004 collaboration

41

agreement with us. Pursuant to the collaboration agreement, we had licensed our Hedgehog protein and novel
small molecule Hedgehog pathway agonists to Wyeth. Wyeth paid us an up-front license fee and provided
research funding through February 2008. Research efforts under the collaboration focused on the preclinical
development of small molecule and protein Hedgehog agonists, primarily for stroke and cardiovascular
indications. Pursuant to the agreement, the collaboration will terminate on May 6, 2008. We intend to pursue
other opportunities to enter into a new collaboration or licensing relationship with a third party relating to this
technology.

Financial Operations Overview

General. Our future operating results will largely depend on the magnitude of payments from our current and
potential future corporate collaborators and the progress of other product candidates currently in our research and
development pipeline. The results of our operations will vary significantly from year to year and quarter to quarter and
depend on, among other factors, the timing of our entry into new collaborations, the timing of the receipt of payments
from collaborators and the cost and outcome of any clinical trials then being conducted. We anticipate that existing
capital resources at December 31, 2007, should enable us to maintain current and planned operations into the second
half of 2009. Our ability to continue funding our planned operations is dependent upon the success of our current
collaborations with Genentech, our ability to successfully enter into one or more additional collaborations for our
technologies, our ability to control our cash burn rate and our ability to raise additional funds through equity, debt or
other sources of financing. A discussion of certain risks and uncertainties that could affect our liquidity, capital
requirements and ability to raise additional funds is set forth under “Part II, Item 1A—Risk Factors.”

Revenue. We do not expect to generate any revenue from the sale of products for several years, if ever.
Substantially all of our gross revenues to date have been derived from license fees, research and development
payments, and other amounts that we have received from our strategic collaborators and licensees. For the year
ended December 31, 2007, each of the following collaborators or former collaborators accounted for a portion of
our total revenue as follows: Genentech, $12,408,000, or 76%; Wyeth, $1,968,000, or 12%; and Procter &
Gamble, $1,878,000, or 11%.

Wyeth’s funding of five of our researchers concluded on February 9, 2008, and we currently have no third-
party funded research. Accordingly, for the majority of our programs under collaboration, our future revenues are
limited to:

•

•

•

•

the amortization of previously received license payments from Wyeth and Strkyer,

research funding from Wyeth through the February 2008 research term,

potential future cash payments, if any, that are contingent upon the successful completion principally of
contractually defined development and regulatory approval objectives, and

royalty payments upon the successful commercialization of any products based upon the collaboration.

In the future, we will seek to generate revenues from a combination of license fees, research and
development funding, milestone payments and royalties resulting from strategic collaborations relating to the
development of products that incorporate our intellectual property, and from sales of any products that we
successfully develop and commercialize, either alone or in collaboration. We expect that any revenues we
generate will fluctuate from quarter to quarter as a result of the timing and amount of payments, if any, to be
received under our existing and any future strategic collaborations and license arrangements, and the amount and
timing of payments that we receive upon the sale of our products, to the extent that any are successfully
commercialized.

42

Research and Development. Research and development expense consists of costs incurred to discover,
research and develop our product candidates. These expenses consist primarily of salaries and related expenses
for personnel
including stock-based compensation expense for employee share-based payments beginning
January 1, 2006. Research and development expenses also include the costs of supplies and reagents, outside
service costs including medicinal chemistry, consulting, and occupancy and depreciation charges. We expense
research and development costs as incurred. We believe that our research and development expenses will
increase in 2008 as compared to prior years as we continue to progress our drug product candidates under our
targeted cancer drug development platform into clinical trials.

Product Candidate

Primary Indication

Collaborator/Licensee

Status

Hedgehog systemic antagonist

- GDC-0449 (small molecule)
- Small molecule and antibody

Cancer
Cancer

Targeted cancer drug development

platform
- CUDC-101 (HDAC, EGFR,

Her2 inhibitor)

- Other targeted cancer

programs

Cancer

Cancer

Genentech
Genentech

Phase I expansion cohort
Preclinical

Internal development

Development candidate

Internal development

Preclinical

Hedgehog agonist(1)

Stroke and cardiovascular

(1)

(1)

disease

(1) On March 7, 2008, Wyeth provided us with written notice that it intends to terminate this collaboration
agreement on May 6, 2008. On the termination date, the licenses granted by us to Wyeth shall terminate and
we intend to pursue other collaboration or lecturing opportunities for this program.

In the chart above, “Phase I expansion cohort” means that our collaborator is currently treating human
patients in an expanded Phase I clinical trial, the principal purpose of which is to evaluate the safety and
biological activity of the compound being tested in a specific solid tumor type. “Development candidate” means
that from our testing in several preclinical models of human disease of various compounds from a particular
compound class, we have selected a single lead candidate for potential future clinical development and are
seeking to complete the relevant safety, toxicology, and other data required to submit an IND application with
the FDA seeking to commence a Phase I clinical trial. “Preclinical” means we are seeking to obtain evidence of
therapeutic efficacy in preclinical models of human disease of one or more compounds within a particular class
of drug candidates.

Because of the early stages of development of these programs, our ability and that of any collaborators and
licensors to successfully complete preclinical and clinical studies of these drug product candidates, and the
is highly uncertain. There are numerous risks and uncertainties
timing of completion of such programs,
associated with developing drugs which may affect our and any collaborators’ future results, including:

•

•

•

•

•

•

•

the scope, quality of data, rate of progress and cost of clinical trials and other research and development
activities undertaken by us or any collaborators;

the results of future preclinical and clinical trials;

the terms and timing of any collaborative, licensing and other arrangements that we may establish;

the cost and timing of regulatory approvals;

the cost and timing of establishing sales, marketing and distribution capabilities;

the cost of establishing clinical and commercial supplies of our product candidates and any products that
we may develop;

the effect of competing technological and market developments; and

43

•

the cost and effectiveness of filing, prosecuting, defending and enforcing any patent claims and other
intellectual property rights.

We cannot reasonably estimate or know the nature, timing and estimated costs of the efforts necessary to
complete the development of, or the period in which material net cash inflows are expected to commence from
any of our drug product candidates. Any failure to complete the development of our product candidates in a
timely manner could have a material adverse effect on our operations, financial position and liquidity.

A further discussion of some of the risks and uncertainties associated with completing our research and
development programs on schedule, or at all, and some consequences of failing to do so, are set forth above in
“Part I, Item 1A—Risk Factors.”

General and Administrative. General and administrative expense consists primarily of salaries and other
related costs for personnel
information
technology, corporate communications and human resource functions. These expenses include stock-based
compensation expense for employee share-based payments beginning January 1, 2006. Other costs include
facility costs not otherwise included in research and development expense, insurance, and professional fees for
legal, patent and accounting services.

finance, accounting, business development,

in executive,

legal,

Critical Accounting Policies and Estimates

The preparation of our consolidated financial statements in conformity with accounting principles generally
accepted in the United States requires that we make estimates and assumptions that affect the reported amounts
and disclosure of certain assets and liabilities at our balance sheet date. Such estimates and judgments include the
carrying value of property and equipment and intangible assets, revenue recognition, the value of certain
liabilities and stock-based compensation. We base our estimates on historical experience and on various other
factors that we believe to be appropriate under the circumstances, the results of which form the basis for making
judgments about the carrying value of assets and liabilities that are not readily apparent from other sources.
Actual results may differ from these estimates under different assumptions or conditions.

While our significant accounting policies are more fully described in our consolidated financial statements,
we believe that the following accounting policies are critical to understanding the judgments and estimates we
use in preparing our financial statements:

Revenue Recognition

Our business strategy includes entering into collaborative license and development agreements with
biotechnology and pharmaceutical companies for the development and commercialization of our product
candidates. The terms of the agreements typically include non-refundable license fees, funding of research and
development, payments based upon achievement of clinical development milestones and royalties on product
sales. We follow the provisions of the Securities and Exchange Commission’s Staff Accounting Bulletin, or
SAB, No. 104, Revenue Recognition, Emerging Issues Task Force, or EITF, Issue No. 00-21, Accounting for
Revenue Arrangements with Multiple Deliverables, EITF Issue No. 99-19, Reporting Revenue Gross as a
Principal Versus Net as an Agent, and EITF Issue No. 01-9, Accounting for Consideration Given by a Vendor to
a Customer (Including a Reseller of the Vendor’s Products).

License Fees and Multiple Element Arrangements. Non-refundable license fees are recognized as revenue
when we have a contractual right to receive such payment, the contract price is fixed or determinable, the
collection of the resulting receivable is reasonably assured and we have no further performance obligations under
the license agreement. Multiple element arrangements, such as license and development arrangements are
analyzed to determine whether the deliverables, which often include a license and performance obligations such
as research and steering committee services, can be separated or whether they must be accounted for as a single

44

unit of accounting in accordance with EITF 00-21. We recognize up-front license payments as revenue upon
delivery of the license only if the license has stand-alone value and the fair value of the undelivered performance
obligations, typically including research and/or steering committee services, can be determined. If the fair value
of the undelivered performance obligations can be determined, such obligations would then be accounted for
separately as performed. If the license is considered to either (i) not have stand-alone value or (ii) have
standalone value but the fair value of any of the undelivered performance obligations cannot be determined, the
arrangement would then be accounted for as a single unit of accounting and the license payments and payments
for performance obligations are recognized as revenue over the estimated period of when the performance
obligations are performed.

Whenever we determine that an arrangement should be accounted for as a single unit of accounting, we
must determine the period over which the performance obligations will be performed and revenue will be
recognized. Revenue will be recognized using either a relative performance or straight-line method. We
recognize revenue using the relative performance method provided that we can reasonably estimate the level of
effort required to complete our performance obligations under an arrangement and such performance obligations
are provided on a best-efforts basis. Direct labor hours or full-time equivalents are typically used as the measure
of performance. Revenue recognized under the relative performance method would be determined by multiplying
the total payments under the contract, excluding royalties and payments contingent upon achievement of
substantive milestones, by the ratio of level of effort incurred to date to estimated total level of effort required to
complete our performance obligations under the arrangement. Revenue is limited to the lesser of the cumulative
amount of payments received or the cumulative amount of revenue earned, as determined using the relative
performance method, as of each reporting period.

If we cannot reasonably estimate the level of effort required to complete our performance obligations under
an arrangement, the performance obligations are provided on a best-efforts basis and we can reasonably estimate
then the total payments under the
when the performance obligation ceases or becomes inconsequential,
arrangement, excluding royalties and payments contingent upon achievement of substantive milestones, would be
recognized as revenue on a straight-line basis over the period we expect
to complete our performance
obligations. Revenue is limited to the lesser of the cumulative amount of payments received or the cumulative
amount of revenue earned, as determined using the straight-line basis, as of the period ending date.

If we cannot reasonably estimate when our performance obligation either ceases or becomes inconsequential
and perfunctory, then revenue is deferred until we can reasonably estimate when the performance obligation
ceases or becomes inconsequential and perfunctory. Revenue is then recognized over the remaining estimated
period of performance.

judgment

Significant management

is required in determining the level of effort required under an
arrangement and the period over which we are expected to complete our performance obligations under an
arrangement. In addition, if we are involved in a steering committee as part of a multiple element arrangement
that is accounted for as a single unit of accounting, we assess whether our involvement constitutes a performance
obligation or a right to participate. Steering committee services that are not inconsequential or perfunctory and
that are determined to be performance obligations are combined with other research services or performance
obligations required under an arrangement, if any, in determining the level of effort required in an arrangement
and the period over which we expect to complete our aggregate performance obligations.

Substantive Milestone Payments. Our collaboration agreements may also contain substantive milestone
payments. Substantive milestone payments are considered to be performance bonuses that are recognized upon
achievement of the milestone only if all of the following conditions are met:

•

•

•

the milestone payments are non-refundable;

achievement of the milestone involves a degree of risk and was not reasonably assured at the inception
of the arrangement;

substantive effort is involved in achieving the milestone;

45

•

•

the amount of the milestone payment is reasonable in relation to the effort expended or the risk
associated with achievement of the milestone; and,

a reasonable amount of time passes between the up-front license payment and the first milestone
payment as well as between each subsequent milestone payment.

Determination as to whether a payment meets the aforementioned conditions involves management’s
judgment. If any of these conditions are not met, the resulting payment would not be considered a substantive
milestone, and therefore the resulting payment would be considered part of the consideration for the single unit
of accounting and be recognized as revenue as such performance obligations are performed under either the
relative performance or straight-line methods, as applicable, and in accordance with these policies as described
above. In addition, the determination that one such payment was not a substantive milestone could prevent us
from concluding that subsequent milestone payments were substantive milestones and, as a result, any additional
milestone payments could also be considered part of the consideration for the single unit of accounting and
would be recognized as revenue as such performance obligations are performed under either the relative
performance or straight-line methods, as applicable.

Reimbursement of Costs. Reimbursement of costs is recognized as revenue provided the provisions of
EITF 99-19 are met, the amounts are determinable, and collection of the related receivable is reasonably assured.

Royalty Revenue. Royalty revenue is recognized upon the sale of the related products, provided that the
royalty amounts are fixed or determinable, collection of the related receivable is reasonably assured and we have
no remaining performance obligations under the arrangement. If royalties are received when we have remaining
performance obligations, the royalty payments would be attributed to the services being provided under the
arrangement and therefore would be recognized as such performance obligations are performed under either the
relative performance or straight line methods, as applicable, and in accordance with these policies as described
above.

Payments from Curis as a Vendor to a Collaborator as a Customer. For revenue generating arrangements
where we, as a vendor, provide consideration to a licensor or collaborator, as a customer, we apply the provisions
of EITF 01-9. EITF 01-9 addresses the accounting for revenue arrangements where both the vendor and the
customer make cash payments to each other for services and/or products. A payment to a customer is presumed
to be a reduction of the selling price unless we receive an identifiable benefit for the payment and we can
reasonably estimate the fair value of the benefit received. Payments to a customer that are deemed a reduction of
selling price are recorded first as a reduction of revenue, to the extent of both cumulative revenue recorded to
date and of probable future revenues, which include any unamortized deferred revenue balances, under all
arrangements with such customer and then as an expense. Payments that are not deemed to be a reduction of
selling price would be recorded as an expense.

Deferred Revenue. Amounts received prior to satisfying the above revenue recognition criteria are
recorded as deferred revenue in the accompanying consolidated balance sheets. Significant judgments are
required in the application of revenue recognition guidance. For example, in connection with our existing
collaboration agreements, we have recorded on our balance sheet short- and long-term deferred revenue based on
our best estimate of when such revenue will be recognized. Short-term deferred revenue consists of amounts that
are expected to be recognized as revenue, or applied against future co-development costs, by December 31, 2008.
Amounts that we expect will not be recognized prior to December 31, 2008 are classified as long-term deferred
revenue. However, this estimate is based on our operating plan as of December 31, 2007 and on our estimated
performance periods under the collaboration in which we have recorded deferred revenues. If our operating plan
or our estimated performance period should change in the future, we may recognize a different amount of
deferred revenue over the twelve-month period from January 1, 2008 through December 31, 2008. As of
December 31, 2007, we have short-term deferred revenue of $1,853,000 related to our collaborations. As of
December 31, 2007, we have no remaining long-term deferred revenue related to our collaborations.

46

The estimate of deferred revenue also reflects management’s estimate of the periods of our involvement in
certain of our collaborations. Our performance obligations under these collaborations consist of participation on
steering committees and the performance of other research and development services. In certain instances, the
timing of satisfying these obligations can be difficult to estimate. Accordingly, our estimates may change in the
future. Such changes to estimates would result in a change in revenue recognition amounts. If these estimates and
judgments change over the course of these agreements, it may affect the timing and amount of revenue that we
recognize and record in future periods.

Stock-based Compensation

Effective January 1, 2006, we adopted Statement of Financial Accounting Standards No. 123(revised 2004),
Share-Based Payment (SFAS 123(R)). Prior to the adoption of SFAS 123(R), we followed Accounting Principles
Board Opinion No. 25, Accounting for Stock Issued to Employees, (APB 25) and related interpretations in
accounting for share-based payments and had elected the disclosure-only alternative under SFAS 123,
Accounting for Stock-Based Compensation. Accordingly, when options granted to employees had an exercise
price equal to the market value of the stock on the date of grant, no compensation expense was recognized in our
financial statements. SFAS 123(R) eliminates the ability to account for share-based compensation transactions
using APB 25, and generally requires that such transactions be accounted for using a fair-value-based method.
We also adopted the modified prospective transition method for recognizing expense.

We have recorded employee stock-based compensation expense of $3,105,000 and $3,820,000 for the years
ended December 31, 2007 and 2006, respectively. Employee stock-based compensation expense of $7,000 for
the year ended December 31, 2005 was recorded applying APB 25. For the options outstanding as of
December 31, 2007, we estimate that we will record approximately $1,500,000 to $2,000,000, in stock-based
compensation expense under SFAS 123(R) in 2008. We expect that we will issue additional options in 2008 that
will increase the amount of stock-based compensation ultimately recognized. The amount of the incremental
employee stock-based compensation expense attributable to 2008 employee stock options will depend primarily
on the number of stock options issued to employees in 2008, the fair market value of our common stock at the
respective grant dates, and the specific terms of the stock options.

The valuation of employee stock options is an inherently subjective process, since market values are
generally not available for long-term, non-transferable employee stock options. Accordingly, an option-pricing
model is utilized to derive an estimated fair value. In calculating the estimated fair value of our stock options, we
used a Black-Scholes pricing model for a majority of our stock awards and, for a small subset of our awards that
contained a market condition, a lattice model. Both of these models require the consideration of the following six
variables for purposes of estimating fair value:

•

•

•

•

•

•

the stock option exercise price

the expected term of the option

the grant date price of our common stock

the expected volatility of our common stock

the expected dividends on our common stock, which we do not anticipate paying for the foreseeable
future, and

the risk free interest rate for the expected option term

Of the variables above, we believe that the selection of an expected term and expected stock price volatility
are the most subjective. Approximately 56% of the employee stock compensation expense recorded in the year
ended December 31, 2007 relates to continued vesting of stock options that were granted prior to January 1,
2006. In accordance with the transition provisions of SFAS 123(R), the grant date estimates of fair value
associated with prior awards have not been changed. The specific valuation assumptions that were utilized for
purposes of deriving an estimate of fair value at the time that prior awards were issued are as disclosed in our
prior annual reports on Form 10-K, as filed with the SEC.

47

Upon adoption of SFAS 123(R), we were also required to estimate the level of award forfeitures expected to
occur, and record compensation expense only for those awards that we ultimately expect will vest. Accordingly,
we performed a historical analysis of option awards that were forfeited prior to vesting, and recorded total stock
option expense that reflected this estimated forfeiture rate for each of the quarterly periods in 2007 and 2006.
This analysis is re-evaluated quarterly and the forfeiture rate is adjusted as necessary to reflect the actual
forfeitures for the reporting period. Ultimately, the actual expense recognized over the vesting period will only be
for those shares that vest.

Long-lived Assets

Long-lived assets consist of property and equipment, equity securities held in privately-held companies and
goodwill. In the ordinary course of our business, we incur substantial costs related to property and equipment.
Property and equipment is stated at cost and depreciated over the estimated useful lives of the related assets using
the straight-line method. Determining the economic lives of property and equipment requires us to make
significant judgments that can materially impact our operating results. If it were determined that the carrying
value of our other long-lived assets might not be recoverable based upon the existence of one or more indicators
of impairment, we would measure an impairment based on application of SFAS No. 144, Accounting for the
Impairment or Disposal of Long-Lived Assets.

During 2006, we initiated a realignment of our research programs, shifting our focus on later-stage
preclinical drug development programs and de-emphasizing our earlier discovery research programs. As a result,
in 2006 we recorded an impairment charge of $148,000 related to certain of our equipment that was no longer
used in our discovery or other programs. In addition, we revised our estimates of the depreciable lives on the
remaining equipment currently being used in our discovery research programs as a result of the conclusion of
two of our discovery screening programs in late 2006 and early 2007.

In March 2007, our BMP-7 small molecule screening agreement with Centocor (a Johnson & Johnson
subsidiary) concluded in accordance with the terms of contract. Under the terms of the screening agreement,
Centocor maintained an option to exclusively negotiate a broader BMP-7 screening agreement. However, during
the second quarter of 2007, Centocor notified us that it would not opt to negotiate a further BMP-7 small
molecule agreement. The BMP-7 small molecule screening program was the only remaining program utilizing
the majority of our existing discovery screening equipment. We determined that we would not fund the BMP
small molecule program internally. As a result, during the year ended December 31, 2007, we recorded
additional property and equipment impairment charges of $352,000, because this discovery equipment could not
be used on other ongoing programs. In addition, The net proceeds of $332,000 from the sale of these impaired
equipment was applied to our outstanding debt obligations with the Boston Private Bank & Trust Company. We
will continue to review our estimates of remaining useful lives related to assets currently being used on our
remaining programs. Any future changes to the estimated useful lives of our assets could have a material impact
on our financial statements.

As of December 31, 2007, we hold equity investments in two privately-held former collaborators, Aegera
Therapeutics and ES Cell International, or “ESI”. Equity investments in privately-held companies are reflected in the
accompanying consolidated financial statements at cost, as adjusted for impairment. On a quarterly basis, we
re-evaluate our investments in privately-held companies to determine if the carrying values have been impaired.
During the year ended December 31, 2007, we determined that the carrying value of ESI’s stock recorded at our
consolidated balance sheet was in excess of the fair value of the asset. Accordingly, we recorded an impairment charge
of $145,000 by writing down the carrying value of our investment in ESI equity securities to from $150,000 to $5,000.

In September 2006, we were notified that Aegera was trying to secure additional financing at a value that
was significantly less than the current carrying value of Aegera stock we had recorded. We believed that the
terms of Aegera’s planned financing adversely affected the carrying value of our equity investment in Aegera. As
a result, during the third quarter of the year ended December 31, 2006, we wrote down the carrying value of our
investment in Aegera equity securities by $164,000 from $167,000 to $3,000.

48

We assess the impairment of identifiable long-lived assets whenever events or changes in circumstances
indicate that the carrying value may not be recoverable. In addition, we perform a goodwill impairment test
annually. Since January 1, 2002, we have applied the provisions of Statement of Financial Accounting Standards,
or SFAS, No. 142, Goodwill and Other Intangibles. SFAS No. 142 requires us to perform an impairment
assessment annually or whenever events or changes in circumstances indicate that our goodwill may be impaired.
We completed our annual goodwill impairment tests in December 2007, 2006 and 2005, and determined that as
of those dates our fair value exceeded the carrying value of our net assets. Accordingly, no goodwill impairment
was recognized in 2007, 2006 and 2005.

The above list is not intended to be a comprehensive list of all of our accounting policies. In many cases, the
accounting treatment of a particular transaction is specifically dictated by generally accepted accounting
principles, with no need for management’s judgment in their application. There are also areas in which
management’s judgment in selecting any available alternative would not produce a materially different result.

Results of Operations

Years Ended December 31, 2007 and 2006

Revenues

Total revenues are summarized as follows:

For the Year Ended
December 31,

2007

2006

Percentage
Increase/
(Decrease)

Revenues:
Research and development contracts

Genentech . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Wyeth . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Procter & Gamble . . . . . . . . . . . . . . . . . . . . . . . . . . .
Centocor . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Spinal Muscular Atrophy Foundation . . . . . . . . . . . .
Other . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

Subtotal
License fees

. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

Genentech . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Wyeth . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Procter & Gamble . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Micromet

. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Subtotal
Substantive milestones . . . . . . . . . . . . . . . . . . . . . . . . . . . .

$

962,000
1,529,000
636,000
73,000
—
62,000

3,262,000

11,446,000
439,000
1,242,000
—

13,127,000
—

$ 4,758,000
2,299,000
663,000
400,000
1,191,000
28,000

9,339,000

1,500,000
306,000
234,000
2,284,000

4,324,000
3,000,000

Gross Revenues . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

16,389,000

16,663,000

(80%)
(33%)
(4%)
(82%)
(100%)
121%

(65%)

663%
43%
431%
(100%)

204%
(100%)

(2%)

Contra-revenues from co-development with

Genentech . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

—

(1,728,000)

(100%)

Net Revenue . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

$16,389,000

$14,935,000

10%

Gross revenues decreased by $274,000, or 2%, to $16,389,000 for the year ended December 31, 2007 from
$16,663,000 for the prior year. The net decrease is due to decreases in research funding and substantive
milestone revenues offset by an increase in license revenues. The decrease in research and development contracts
of $6,077,000 was the result of the conclusion of research funding in the fourth quarter of 2006 and first quarter
of 2007 under four collaborations, including the conclusion of the research funding portion of our Hedgehog and
Wnt collaborations with Genentech, a sponsored research agreement with the SMA Foundation and a screening
agreement with Centocor. The termination of research funding under these arrangements accounted for

49

$5,314,000 of the decrease in research and development contract revenues. In addition, during the first quarter of
2007 Wyeth decreased from eight to five the number of our researchers supported by Wyeth under our Hedgehog
agonist program. All Wyeth-related research funding concluded in February 2008. As a result of the foregoing,
we expect that revenues under our research and development contracts will continue to decline for 2008.

License revenues increased $8,803,000, or 204%, for the year ended December 31, 2007 as compared to the
prior year, primarily due to the recognition of $10,509,000 in revenue under our June 2003 Hedgehog antagonist
collaboration with Genentech. Prior to the fourth quarter of 2007, we could not estimate the performance period
related to our ongoing joint steering committee obligation under this collaboration and therefore deferred
$7,509,000 in payments that we had received from Genentech in prior years. During the fourth quarter of 2007,
as a result of changed facts and circumstances, we concluded that our joint steering committee performance
obligation had become inconsequential and perfunctory to the agreement. Accordingly, during the fourth quarter
of 2007 we recorded as licensing revenues the $7,509,000 in previously deferred revenues as well as $3,000,000
from a contingent cash payment that we received in October 2007. In addition, we accelerated recognition of
license fee revenue related to our September 2005 collaboration with Procter & Gamble, since Procter & Gamble
terminated this collaboration effective November 2007. This termination resulted in a decrease in our estimated
performance period under this collaboration, resulting in additional revenue of $1,008,000 for the year ended
December 31, 2007 as compared to the year ended December 31, 2006.

The increase in license fee revenues under our June 2003 Hedgehog collaboration with Genentech and our
September 2005 collaboration with Procter & Gamble were partially offset by decreases in license fee revenues
for two of our programs. We recorded $937,500 in license revenue during 2007 under our April 2005 Wnt
collaboration with Genentech, as compared to $1,500,000 for the prior year period. In addition, during the year
ended December 31, 2006, we recognized $2,284,000 in license fee revenue as part of a settlement agreement
with a former collaborator, Micromet. We did not record any license fee revenue under this agreement in 2007.

We also recorded $3,000,000 in substantive milestone revenue during the year ended December 31, 2006
under our June 2003 collaboration with Genentech. In addition, we did not record contra-revenues for the year
ended December 31, 2007 compared to contra-revenues of $1,728,000 for the year ended December 31, 2006. On
August 31, 2006, we ceased our participation in a co-development arrangement with Genentech of a basal cell
carcinoma drug candidate pursuant to which we had been recording contra-revenues.

Operating Expenses

Research and development expenses are summarized as follows:

Research and Development Program Primary Indication

Collaborator

For the Year
Ended December 31,

2007

2006

Percentage
Increase/
(Decrease)

Hh systemic small molecule

antagonist

CUDC-101 (HDAC, EGFR, Her2

inhibitor)

Single and multi-target inhibitors
Hh small molecule agonist or

protein

Wnt signaling pathway
Hh small molecule agonist
Discovery research
Net impairment of assets
Stock-based compensation

Total research and development expense

Cancer

Genentech

$

245,000

$ 1,695,000

(86%)

Cancer
Cancer
Nervous system disorders/

Internal
Internal

cardiovascular disease Wyeth

Cancer
Hair loss
Various
N/A
N/A

Genentech
Procter & Gamble
Various/internal

5,056,000
4,893,000

— 100%
130%

2,124,000

1,593,000
638,000
23,000
1,265,000
263,000
803,000

2,409,000
2,763,000
835,000
3,511,000
148,000
1,105,000

$14,779,000

$14,590,000

(34%)
(77%)
(97%)
(64%)
78%
(27%)

1%

Our research and development expenses increased by $189,000, or 1%, to $14,779,000 for the year ended
December 31, 2007 as compared to $14,590,000 for the prior year period. This is due to the result of several
offsetting variances within our various programs. We increased spending by $7,825,000 for the internal

50

development of our targeted cancer drug development programs, including CUDC-101, as we shifted spending
from several previously funded programs that have concluded. These previously funded programs decreased by
$6,633,000 from the prior year period and included (i) the conclusion in the fourth quarter of 2006 and first
quarter of 2007 of the research funding under our ongoing Hedgehog antagonist and our Wnt signaling pathway
collaborations with Genentech, (ii) the termination by Procter & Gamble of a September 2005 Hedgehog agonist
collaboration agreement for hair loss, and (iii) the conclusion of a sponsored research agreement with the SMA
Foundation and a BMP-7 small molecule screening agreement with Centocor, both to conduct discovery research
activities.

Spending on our collaborator-funded program with Wyeth decreased $816,000 as a result of fewer
researchers supporting the respective program. Funding on this program concluded in February 2008 in
accordance with the terms of the agreement, and we expect that we will not incur any material costs subsequent
to February 2008 as Wyeth notified us that it was terminating our collaboration effective May 6, 2008.

Stock-based compensation expense also decreased $302,000 as a result of a decline in the grant date fair

value of stock options issued in 2007 as compared to 2006, which resulted in lower compensation expense.

As the research funding concluded on programs under collaboration and as we shifted our research focus,
we reallocated certain of these resources to our internal targeted cancer drug development programs, including
CUDC-101, which we initiated in the first half of 2006. These programs accounted for $9,949,000, or 67%, of
our 2007 research and development expense compared to $2,124,000 for the same prior year period, an increase
of $7,825,000. We expect that these cancer programs will consist of a majority of our ongoing future research
and development expenses for the foreseeable future.

General and administrative expenses are summarized as follows:

For the Year Ended
December 31,

2007

2006

Percentage
Increase/
(Decrease)

Personnel
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Occupancy and depreciation . . . . . . . . . . . . . . . . . . . . . . . .
Legal services . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Consulting and professional services . . . . . . . . . . . . . . . . . .
Insurance costs . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Other general and administrative expenses . . . . . . . . . . . . .
Stock-based compensation . . . . . . . . . . . . . . . . . . . . . . . . . .

$2,697,000
138,000
2,220,000
1,122,000
443,000
977,000
2,387,000

$ 2,758,000
678,000
1,558,000
1,450,000
451,000
822,000
2,657,000

Total general and administrative expenses . . . . . . . . .

$9,984,000

$10,374,000

(2%)
(80%)
42%
(23%)
(2%)
19%
(10%)

(4%)

General and administrative expenses decreased $390,000, or 4%, for the year ended December 31, 2007 as
compared to 2006 as a result of expense reductions in most cost categories, offset by increases in spending for
legal services and other administrative expenses. These decreases included our receipt in 2007 of $262,000 in
proceeds under an April 2007 settlement agreement entered into with a former subtenant that had defaulted on a
sublease of our 61 Moulton Street facility. We recorded $212,000 of this amount as a reduction of expense. In
addition, our lease on our 61 Moulton Street facility concluded on April 30, 2007, which reduced our overall
occupancy costs. Professional and consulting services decreased $328,000 as a result of expenses incurred for the
restatement of our prior financial statements during the first quarter of 2006 and costs incurred during 2006
associated with the formation of our Chinese subsidiary, including technology evaluations and review of business
development opportunities in China. In addition, personnel costs and stock-based compensation decreased
$61,000 and $270,000, respectively. Stock-based compensation expense decreased as a result of a decline in the
grant date fair value of stock options issued in 2007 as compared to 2006, which resulted in lower compensation
expense.

51

Offsetting these decreases, legal services increased $662,000 as a result of increased spending related to our
patent portfolio,
including filings related to CUDC-101, other programs under our targeted cancer drug
development platform and foreign patent applications. Other general and administrative costs are comprised of
travel costs, temporary help, and computer and office supplies. These costs increased $155,000 primarily due to
increased travel costs and higher NASDAQ filing fees resulting from our August 2007 private placement.

Other Income (Expense)

For the year ended December 31, 2007, interest income was $1,609,000 as compared to $1,577,000 for the
year ended December 31, 2006, an increase of $32,000, or 2%. The increase in interest income resulted primarily
from higher interest rates for the year ended December 31, 2007 as compared to the year ended December 31,
2006.

For the year ended December 31, 2007, other expense was $114,000 as compared to $155,000 for the year
ended December 31, 2006, a decrease of $41,000, or 26%. During the year ended December 31, 2007, we wrote
down the carrying value of our investment in ES Cell International equity securities, recognizing a charge of
$145,000 compared to a charge of $164,000 from the write down of the carrying value of our investment in
Aegera equity securities during the year ended December 31, 2006.

For the year ended December 31, 2007, interest expense was $85,000, as compared to $196,000 for the year
ended December 31, 2006, a decrease of $111,000, or 57%. The decrease resulted from lower outstanding debt
obligations during the year ended December 31, 2007 under our notes with the Boston Private Bank & Trust
Company.

Net Loss Applicable to Common Stockholders

As a result of the foregoing, we incurred a net loss applicable to common stockholders of $6,964,000 for the

year ended December 31, 2007, as compared to $8,829,000 for the year ended December 31, 2006.

52

Years Ended December 31, 2006 and 2005

Revenues

Total revenues are summarized as follows:

For the Year Ended
December 31,

2006

2005

Percentage
Increase/
(Decrease)

Revenues:
Research and development contracts

Genentech . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Wyeth . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Procter & Gamble . . . . . . . . . . . . . . . . . . . . . . . . . . .
Centocor . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Spinal Muscular Atrophy Foundation . . . . . . . . . . . .
Other . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

$ 4,758,000
2,299,000
663,000
400,000
1,191,000
28,000

$ 5,856,000
2,327,000
265,000
27,000
1,955,000
63,000

Subtotal
License fees

. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

Genentech . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Wyeth . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Procter & Gamble . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Micromet

Subtotal
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Substantive milestones . . . . . . . . . . . . . . . . . . . . . . . . . . . .

9,339,000

10,493,000

1,500,000
306,000
234,000
2,284,000

4,324,000
3,000,000

562,000
272,000
24,000
1,400,000

2,258,000
250,000

Gross Revenues . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

16,663,000

13,001,000

Contra-revenues from co-development with

Genentech . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

(1,728,000)

(6,999,000)

Net Revenue . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

$14,935,000

$ 6,002,000

(19%)
(1%)
150%
1,381%
(39%)
(56%)

(11%)

167%
13%
875%
63%

91%
1,100%

28%

(75%)

149%

Gross revenues increased by $3,662,000, or 28%, to $16,663,000 for the year ended December 31, 2006
from $13,001,000 for 2005. This increase was primarily as the result of $3,000,000 in substantive milestone
revenue that we recorded in 2006 under our Hedgehog antagonist collaboration with Genentech. In 2005, we
recorded a total of $250,000 in substantive milestone revenue relating to our Wyeth collaboration. In addition,
our license revenues increased by $2,066,000 to $4,324,000 in 2006 from $2,258,000 in 2005. This increase was
principally due to changes in revenues under two of our collaborations. First, we entered into a settlement
agreement with Micromet during the third quarter of 2006, under which we recorded revenues of $2,284,000. In
2005, we recorded $1,400,000 in license fee revenues from Micromet, resulting in a year-over-year increase in
license fee revenues attributable to Micromet of $884,000. In addition, we decreased our estimated performance
period under our April 2005 collaboration with Genentech, resulting in an acceleration of license fee revenue of
$750,000 in 2006. The remaining increase of $188,000 in Genentech license fee revenue is due to a full year of
amortization of the April 2005 license fee during 2006 compared to only eight months during 2005. Offsetting
these increases, research and development contract revenues for the year ended December 31, 2006 decreased
$1,154,000 to $9,339,000 for 2006 as compared to $10,493,000 for the year ended December 31, 2005. Two of
our research funding arrangements concluded during the fourth quarter of 2006, including the research funding
for our Hedgehog antagonist program under collaboration with Genentech and our research funding with the
Spinal Muscular Atrophy Foundation. In addition, the number of our scientists for whom we received research
funding from Genentech under our Hedgehog antagonist program decreased during 2006.

53

Our net revenues increased $8,933,000, or 149%, to $14,935,000 for 2006 as compared to $6,002,000 for
2005. This increase was primarily due to a decrease in contra-revenues of $5,271,000 for the year ended
December 31, 2006, as well as an increase in our gross revenues as discussed above, as compared to 2005.
Contra-revenues represent amounts owed for the reimbursement of our equal share of costs incurred by
Genentech under our collaboration related to the co-development of a basal cell carcinoma drug candidate
through August 31, 2006. Contra-revenues for the year ended December 31, 2005 were significantly higher than
the same period in 2006 because our participation in co-development ended on August 31, 2006. We do not
expect to incur any additional costs related to this program and Genentech will be solely responsible for all future
costs and development decisions regarding the basal cell carcinoma program.

Operating Expenses

Research and development expenses are summarized as follows:

Research and Development Program Primary Indication

Collaborator

Hh small molecule antagonist
Cancer
Single and multi-target inhibitors Cancer
Hh small molecule agonist or

Genentech
Internal
Wyeth

protein

Wnt signaling pathway
Hh small molecule agonist
Discovery research
BMP-7 small molecule agonists
Discovery research
Impairment of equipment
Stock-based compensation

Nervous system
disorders/cardiovascular
disease
Cancer
Hair loss
Spinal muscular atrophy
Kidney disease and other Centocor
Various
N/A
N/A

Internal

Genentech
Procter & Gamble
SMA Foundation

Total research and development expense

For the Year Ended
December 31,

2006

2005

Percentage
Increase/
(Decrease)

$ 1,695,000
2,124,000
2,409,000

$ 3,625,000
—
2,912,000

2,763,000
835,000
1,734,000
963,000
814,000
148,000
1,105,000

1,885,000
1,061,000
2,600,000
—
1,408,000
—
214,000

$14,590,000

$13,705,000

(53%)
100%
(17%)

47%
(21%)
(33%)
100%
(42%)
100%
417%

6%

Our research and development expenses increased by $885,000, or 6%, to $14,590,000 for 2006 from
$13,705,000 in 2005. This increase was primarily due to an increase in stock-based compensation expense of
$891,000. Our overall spending on research programs remained consistent from period to period due to the
reallocation of resources to various programs. In 2006, we increased spending on our targeted cancer drug
development platform programs as well as on our collaborator-funded discovery research programs with
Genentech and Centocor. Also, in 2006, we decreased spending on our Hedgehog antagonist cancer program, our
Hedgehog agonist for neurological disorders, and many of our discovery programs.

General and administrative expenses are summarized as follows:

For the Year Ended
December 31,

2006

2005

Personnel
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Occupancy and depreciation . . . . . . . . . . . . . . . . . . . . . . . .
Legal services . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Consulting and professional services . . . . . . . . . . . . . . . . . .
Insurance costs . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Other general and administrative expenses . . . . . . . . . . . . .
Stock-based compensation . . . . . . . . . . . . . . . . . . . . . . . . . .

$ 2,758,000
678,000
1,558,000
1,450,000
451,000
822,000
2,657,000

$3,251,000
1,111,000
1,510,000
1,081,000
424,000
706,000
7,000

Percentage
Increase/
(Decrease)

(15%)
(39%)
3%
34%
6%
16%
37,857%

Total general and administrative expenses . . . . . . . . .

$10,374,000

$8,090,000

28%

54

General and administrative expenses increased by $2,284,000, or 28%,

to $10,374,000 for 2006 as
compared from $8,090,000 for 2005. The increase was primarily due to an increase in stock-based compensation
expense of $2,650,000. In addition, professional and consulting services increased $369,000 related to the legal
and accounting fees related to our restatement of our financial statements in the first quarter of 2006 and costs
associated with the formation of our Chinese subsidiary. These increases were offset by decreases in personnel
and occupancy costs of $493,000 and $433,000, respectively. The decrease in personnel costs primarily relates to
executive bonuses incurred in 2005. We also recognized a $500,000 loss in 2005 on an operating lease resulting
from the loss of subtenant income.

Other Income (Expense)

For the year ended December 31, 2006, interest income was $1,577,000 as compared to $1,196,000 for the
year ended December 31, 2005, an increase of $381,000, or 32%. The increase in interest income resulted from
higher interest rates for the year ended December 31, 2006 as compared to the year ended December 31, 2005.

For the year ended December 31, 2006, other expense was $155,000 as compared to other income $125,000
for the year ended December 31, 2005, a decrease of $280,000, or 224%. During the year ended December 31,
2006, we wrote down the carrying value of our investment in Aegera equity securities, recognizing a charge of
$164,000.

For the year ended December 31, 2006, interest expense was $196,000, as compared to $308,000 for the
year ended December 31, 2005, a decrease of $112,000, or 36%. The decrease resulted from lower outstanding
debt obligations during the year primarily due to the conversion of a note payable to Becton Dickinson in January
2006.

Net Loss Applicable to Common Stockholders

As a result of the foregoing, we incurred a net loss applicable to common stockholders of $8,829,000 for the

year ended December 31, 2006, as compared to $14,855,000 for the year ended December 31, 2005.

Liquidity and Capital Resources

We have financed our operations primarily through license fees and research and development funding from
our collaborators and licensors, the private and public placement of our equity securities, debt financings and the
monetization of certain royalty rights.

At December 31, 2007, our principal sources of liquidity consisted of cash, cash equivalents, and marketable
securities of $41,459,000, excluding restricted long-term investments of $210,000. Our cash and cash equivalents
are highly liquid investments with a maturity of three months or less at date of purchase and consist of time
deposits and investments in money market funds with commercial banks and financial institutions and short-term
commercial paper. We also maintain cash balances with financial institutions in excess of insured limits. We do
not anticipate any losses with respect to such cash balances because the balances are invested in highly rated
securities. Our marketable securities are investments with expected maturities of greater than three months, but
less than twelve months, and consist of commercial paper, corporate debt securities, and government obligations.

The use of our cash flows for operations primarily consists of salaries and wages for our employees, facility
and facility-related costs for our office and laboratory, fees paid in connection with preclinical studies, laboratory
supplies, consulting fees and legal fees.

To date, the primary source of our cash flows from operations has been payments received from our
collaborators and licensors. Recently, however, a majority of our research and development effort and expense
has shifted from our programs that are funded under collaborations relating to the Hedgehog pathway and various
discovery programs to the development of programs under our targeted cancer drug development platform.
While we are seeking a corporate collaborator for one or more of the programs in this platform, we are currently

55

progressing the research and development of these programs on our own. We believe that our research and
development expenses will increase in 2008 as we expect to initiate phase I clinical testing for CUDC-101, the
first development candidate from our proprietary platform, as well as to select at
least one additional
development candidate from our proprietary platform during 2008. Should we begin clinical evaluations of
CUDC-101 or another of these drug candidates, we expect that our research and development costs would
increase significantly in 2008.

In general, our only source of cash flows from operations for the foreseeable future will be up-front license
payments from new collaborations, if any, contingent cash payments for the achievement of development
objectives, if any are met, and funded research and development that we may receive under collaboration
agreements. Except for five researchers who were funded by Wyeth through February 9, 2008, substantially all of
our research staff is working on developing drug candidates from our targeted cancer drug development platform.
The timing of or entrance into any new collaboration agreements and any contingent cash payments under
existing collaboration agreements are not assured, cannot be easily predicted and may vary significantly from
quarter to quarter. Potential future cash payments, if any, are contingent upon the successful completion
principally of contractually defined development and regulatory approval objectives under existing collaboration
agreements, and royalty payments are contingent upon the successful commercialization of any products based
upon the collaboration.

Net cash used in operating activities was $8,594,000 for the year ended December 31, 2007, compared to
$5,980,000 for the year ended December 31, 2006. Cash used in operating activities during the year ended
December 31, 2007 was primarily the result of our net loss for the period of $6,964,000. In addition, changes in
certain operating assets and liabilities affected operating cash during the year ended December 31, 2007, including a
decrease in deferred revenue of $9,034,000 as a result of accelerated license fee amortization under our Genentech
and Procter & Gamble collaborations. Offsetting this decrease, and increasing our cash position, our accounts
receivables decreased $1,112,000 primarily related to our Microment settlement, and our accounts payable and
accrued liabilities increased $1,201,000. Finally, several noncash items further offset our net loss, including stock-
based compensation expense of $3,190,000, depreciation of $1,302,000 and impairment of assets of $497,000.

Cash used in operating activities during the years ended December 31, 2006 was primarily the result of our
net loss for the period of $8,829,000, partially offset by non-cash charges including stock-based compensation of
$3,762,000 and depreciation of $1,408,000. In addition, changes in certain operating assets and liabilities offset
these increases in operating cash during year ended December 31, 2006. Specifically, our accounts payable and
accrued liabilities decreased $1,603,000 primarily as a result of the cessation on August 31, 2006 of our
co-development arrangement with Genentech and our deferred revenue decreased $1,107,000 as a result of
license fee amortization under our various collaborations.

We expect to continue to use cash in operations as we continue to research and develop our existing product
candidates and advance our
targeted cancer drug development platform programs through preclinical
development and, we expect, into clinical development. In addition, in the future we may owe royalties and other
contingent payments to our licensors based on the achievement of developmental milestones, product sales and
specified other objectives.

Investing activities used $5,919,000 of cash for the year ended December 31, 2007, resulting from
$6,160,000 in net investment purchases primarily related to investment of funds received from our August 2007
private placement. In addition, for the year ended December 31, 2007, we received $316,000 in net proceeds
from the sale of certain of our assets used to pay down our outstanding principal obligations to the Boston Private
Bank & Trust Company. We currently do not expect to undertake any significant capital projects during 2007.
Investing activities generated cash of $3,420,000 for the year ended December 31, 2006, resulting from
$4,120,000 in net investment sales offset by $694,000 in fixed asset purchases.

56

Financing activities provided cash of $13,080,000 for the year ended December 31, 2007, resulting
primarily from $14,646,000 received in issuances of common stock, including net proceeds of $14,422,000 from
our August 2007 private placement of common stock and $224,000 received upon the exercise of stock options
and purchases under our employee stock purchase plan. Offsetting these increases in cash, we repaid $1,565,000
of our term debt with the Boston Private Bank & Trust Company. Financing activities used $921,000 of cash for
the year ended December 31, 2006, resulting from debt repayments of $1,233,000 on our notes offset by
proceeds of $312,000 received upon stock option exercises and purchases under our employee stock purchase
plan.

On August 8, 2007, we completed a private placement of units, each with a purchase price of $1.06375 per
share and comprising one share of common stock and a warrant to purchase 0.35 shares of common stock. As a
result, we issued an aggregate of 13,631,022 shares of common stock and warrants to purchase an additional
4,770,859 shares of common stock. We intend to use the $14,422,000 in net proceeds from the private placement
primarily to support our clinical and research and development efforts, working capital and other general
corporate purposes. The warrants have an exercise price of $1.02 per share and expire on August 8, 2012. We can
require the mandatory exercise of the warrants in the event that our stock closing price on NASDAQ exceeds
$2.50 per share for a period of 30 days. We filed a resale registration statement in Form S-3, which was declared
effective by the SEC on September 10, 2007, to register for resale the shares of common stock, and the shares of
common stock underlying the warrants, held by the investors.

On March 23, 2005, we converted $2,250,000 financed under an amended loan agreement with the Boston
Private Bank & Trust Company into a 36-month term note that bears interest at a fixed rate of 7.36% for the
repayment period. Under the terms of the note payable, we are required to make equal monthly payments of
$62,500 plus any accrued interest beginning on May 1, 2005 extending through April 2008, unless the
outstanding principal is paid in full earlier.

On December 9, 2005, we converted $1,450,000 financed under a separate loan agreement with the Boston
Private Bank & Trust Company into a 36-month term note that bears interest at a fixed rate of 7.95% for the
repayment period. During the year ended December 31, 2007, we sold certain of our assets and lab supplies for
which we received $321,000 in gross proceeds for the assets and $11,000 for lab supplies that were not
collateralized by this note. The total proceeds of $332,000 were remitted to Boston Private Bank & Trust and
were applied to the principal obligation outstanding under this loan agreement. None of the terms of the loan
were changed as a result of the sale of assets collateralized under this agreement. Under the terms of the note
payable, we are required to make equal monthly payments of $40,278 plus any accrued interest beginning on
January 1, 2006 extending through the repayment period, which is April 2008 after giving effect to the $332,000
in additional principal payments, which resulted from our sale of certain of our pledged assets during 2007.

These loans are collateralized by all of our property and equipment assets, except for fixtures. The loan
collateral also excludes and property or equipment that are purchased after March 23, 2005 under purchase
money arrangements with equipment lenders, however, we have not completed any such purchases. As of
December 31, 2007, we were in compliance with the sole covenant under each of these financing agreements.
The covenant requires us to maintain a minimum working capital ratio. Should we fail to pay amounts when due
or fail
the entire obligation becomes
immediately due at the option of the Boston Private Bank & Trust Company.

to maintain compliance with the covenant under the agreements,

57

Contractual Obligations

In addition to our loan agreement with Boston Private Bank & Trust Company, we also have contractual
obligations including an operating lease related to our facility, research services agreements, consulting
agreements, and license agreements. The following table summarizes our contractual obligations due by the
period indicated at December 31, 2007:

(amounts in 000’s)

Total

Less than
One Year

One to
Three Years

Three to
Five Years

More than
Five Years

Debt obligations under note payable, including

interest . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Operating lease obligations . . . . . . . . . . . . . . . . . . . . . . .
Outside service obligations(1)
. . . . . . . . . . . . . . . . . . . .
Licensing obligations(2) . . . . . . . . . . . . . . . . . . . . . . . . .

$ 408
2,844
1,122
165

$ 408
948
1,122
165

Total future obligations . . . . . . . . . . . . . . . . . . . . . .

$4,539

$2,643

$ —
1,896
—
—

$1,896

$—
—
—
—

$—

$—
—
—
—

$—

(1) Outside service obligations consist of agreements we have with outside labs, consultants and various other

service organizations.

(2)

In the future, we may owe royalties and other contingent payments to our licensees based on the
achievement of developmental milestones, product sales and specified other objectives. These potential
future obligations are not included in the above table.

We anticipate that existing capital resources at December 31, 2007, excluding any cash payments that are
contingent upon the achievement of defined development objectives under our ongoing collaborations with
Genentech and our assignment agreement with Stryker Corporation, should enable us to maintain current and
planned operations into second half of 2009. We expect to incur substantial additional research and development
and other costs, including costs related to preclinical studies and clinical trials, for the foreseeable future. Our
ability to continue funding planned operations beyond second half of 2009 is dependent upon, among other
things, the success of our collaborations, our ability to control our cash burn rate and our ability to raise
additional funds through additional corporate collaborations, equity or debt financings, or from other sources of
financing. We are seeking additional collaborative arrangements and also anticipate that we will seek to raise
funds through one or more financing transactions, if conditions permit. Due to our significant long-term capital
requirements, we intend to seek to raise funds through the sale of debt or equity securities when conditions are
favorable, even if we do not have an immediate need for additional capital at such time. Additional financing
may not be available or, if available, it may not be available on favorable terms. In addition, the sale of additional
debt or equity securities could result in dilution to our stockholders. If substantial additional funding is not
available, our ability to fund research and development and other operations will be significantly affected and,
accordingly, our business will be materially and adversely affected. See “Part I, Item 1A—Risk Factors,” for a
further discussion of certain risks and uncertainties that could affect our liquidity, capital requirements and
ability to raise additional capital.

Off-Balance Sheet Arrangements

We have no off-balance sheet arrangements as of December 31, 2007.

Inflation

We believe that inflation has not had a significant impact on our revenue and results of operations since

inception.

58

New Accounting Pronouncements

In February 2007, the FASB issued Statement of Financial Accounting Standards No. 159 (SFAS No. 159),
The Fair Value Option for Financial Assets and Financial Liabilities—including an amendment of FASB
Statement No. 115. SFAS No. 159, which amends SFAS No. 115, allows certain financial assets and liabilities to
be recognized, at our election, at fair market value, with any gains or losses for the period recorded in the
statement of income. SFAS No. 159 includes available-for-sales securities in the assets eligible for this
treatment. Currently, we record the gains or losses for the period in the statement of comprehensive income and
in the equity section of the balance sheet. SFAS No. 159 is effective for fiscal years beginning after
November 15, 2007, and interim periods in those fiscal years. While we are currently evaluating the provisions of
SFAS No. 159, the adoption is not expected to have a material impact on our consolidated financial statements.

In June 2007, the FASB issued EITF Issue No. 07-3 (EITF 07-3), Accounting for Advance Payments for
Goods or Services to Be Used in Future Research and Development Activities. EITF 07-3 is limited to
non-refundable advance payments for goods and services to be used or rendered in future research and
development activities pursuant to an executory contractual arrangement. The EITF affirms that these payments
should be capitalized and deferred until the goods have been delivered or the related services have been
performed. EITF 07-3 is effective for fiscal years beginning after December 15, 2007, and interim periods in
those fiscal years. We do not expect the adoption of EITF 07-3 to have a material impact on our consolidated
financial statements.

ITEM 7A. QUANTITATIVE AND QUALITATIVE DISCLOSURES ABOUT MARKET RISK

Our current cash balances in excess of operating requirements are invested in cash equivalents and short-
term marketable securities, generally money market funds and corporate debt securities with an average maturity
of less than one year. All marketable securities are considered available for sale. The primary objective of our
cash investment activities is to preserve principal while at the same time maximizing the income we receive from
our invested cash without significantly increasing risk of loss. Our marketable securities are subject to interest
rate risk and will fall in value if market interest rates increase. However, because of the short-term nature of the
marketable securities, we do not believe that interest rate fluctuations would materially impair the principal
amount of our investments. Our investments are investment grade securities, and deposits are with investment
grade financial institutions. We believe that the realization of losses due to changes in credit spreads is unlikely
as we have the ability to hold our investments for a sufficient period of time to recover the fair value of the
investment and there is sufficient evidence to indicate that the fair value of the investment is recoverable. We do
not use derivative financial instruments in our investment portfolio. We do not believe that a 10% change in
interest rate percentages would have a material impact on the fair value of our investment portfolio or our interest
income.

As of December 31, 2007, we held Chinese Yuan Renminbi-denominated assets on our balance sheet of
$131,000. The underlying assets are expected to have a holding period of one year or less. The value of these
assets could fluctuate based on changes in the exchange rate between the dollar and Chinese Yuan Renminbi. We
have not entered into any hedging agreements relating to this risk. We do not believe that a 10% change in
foreign currency exchange rates would have a material impact on the fair value of these assets or our net income/
loss.

59

ITEM 8.

FINANCIAL STATEMENTS AND SUPPLEMENTARY DATA

Management’s Report on Internal Control Over Financial Reporting

Our management is responsible for establishing and maintaining adequate internal control over financial
reporting. Internal control over financial reporting is defined in Rules 13a-15(f) or 15d-15(f) promulgated under
the Securities Exchange Act of 1934, as amended, as a process designed by, or under the supervision of, our
principal executive and principal financial officers and effected by our board of directors, management and other
personnel, to provide reasonable assurance regarding the reliability of financial reporting and the preparation of
financial statements for external purposes in accordance with generally accepted accounting principles and
includes those policies and procedures that:

•

•

•

Pertain to the maintenance of records that
transactions and dispositions of our assets;

in reasonable detail accurately and fairly reflect

the

Provide reasonable assurance that transactions are recorded as necessary to permit preparation of
financial statements in accordance with generally accepted accounting principles, and that our receipts
and expenditures are being made only in accordance with authorizations of management and our
directors; and

Provide reasonable assurance regarding prevention or timely detection of unauthorized acquisition, use
or disposition of our assets that could have a material effect on the financial statements.

Because of its inherent
internal control over financial reporting may not prevent or detect
misstatements. Also, projections of evaluations of effectiveness to future periods are subject to the risk that
controls may become inadequate because of changes in conditions, or that the degree of compliance with the
policies or procedures may deteriorate.

limitations,

Our management assessed the effectiveness of our internal control over financial reporting as of December 31,
2007. In making this assessment our management used the criteria established in Internal Control—Integrated
Framework issued by the Committee of Sponsoring Organizations of the Treadway Commission, or COSO.

Based on our assessment, management concluded that, as of December 31, 2007, our internal control over
financial reporting is effective based on the criteria established in Internal Control—Integrated Framework
issued by COSO.

The effectiveness of internal control over financial reporting as of December 31, 2007 has been audited by
PricewaterhouseCoopers LLP, an independent registered public accounting firm, as stated in their report which
appears herein.

60

Report of Independent Registered Public Accounting Firm

To the Board of Directors and Stockholders of Curis, Inc.:

In our opinion, the accompanying consolidated balance sheets and the related consolidated statements of
operations and comprehensive loss, of stockholders’ equity and of cash flows, present fairly, in all material
respects, the financial position of Curis, Inc. and its subsidiaries at December 31, 2007 and 2006, and the results
of their operations and their cash flows for each of the three years in the period ended December 31, 2007 in
conformity with accounting principles generally accepted in the United States of America. Also in our opinion,
the Company maintained, in all material respects, effective internal control over financial reporting as of
December 31, 2007, based on criteria established in Internal Control—Integrated Framework issued by the
Committee of Sponsoring Organizations of the Treadway Commission (COSO). The Company’s management is
responsible for these financial statements, for maintaining effective internal control over financial reporting and
for its assessment of the effectiveness of internal control over financial reporting, included in the accompanying
Management’s Report on Internal Control Over Financial Reporting. Our responsibility is to express opinions on
these financial statements and on the Company’s internal control over financial reporting based on our integrated
audits. We conducted our audits in accordance with the standards of the Public Company Accounting Oversight
Board (United States). Those standards require that we plan and perform the audits to obtain reasonable
assurance about whether the financial statements are free of material misstatement and whether effective internal
control over financial reporting was maintained in all material respects. Our audits of the financial statements
included examining, on a test basis, evidence supporting the amounts and disclosures in the financial statements,
assessing the accounting principles used and significant estimates made by management, and evaluating the
overall financial statement presentation. Our audit of internal control over financial reporting included obtaining
an understanding of internal control over financial reporting, assessing the risk that a material weakness exists,
and testing and evaluating the design and operating effectiveness of internal control based on the assessed risk.
Our audits also included performing such other procedures as we considered necessary in the circumstances. We
believe that our audits provide a reasonable basis for our opinions.

As discussed in Note 2 to the consolidated financial statements, the Company changed the manner in which it
accounts for share-based compensation in 2006.

A company’s internal control over financial reporting is a process designed to provide reasonable assurance
regarding the reliability of financial reporting and the preparation of financial statements for external purposes in
accordance with generally accepted accounting principles. A company’s internal control over financial reporting
includes those policies and procedures that (i) pertain to the maintenance of records that, in reasonable detail,
accurately and fairly reflect the transactions and dispositions of the assets of the company; (ii) provide reasonable
assurance that transactions are recorded as necessary to permit preparation of financial statements in accordance
with generally accepted accounting principles, and that receipts and expenditures of the company are being made
only in accordance with authorizations of management and directors of the company; and (iii) provide reasonable
assurance regarding prevention or timely detection of unauthorized acquisition, use, or disposition of the
company’s assets that could have a material effect on the financial statements.

Because of its inherent
internal control over financial reporting may not prevent or detect
misstatements. Also, projections of any evaluation of effectiveness to future periods are subject to the risk that
controls may become inadequate because of changes in conditions, or that the degree of compliance with the
policies or procedures may deteriorate.

limitations,

/s/ PRICEWATERHOUSECOOPERS LLP
Boston, Massachusetts
March 14, 2008

61

CURIS, INC. AND SUBSIDIARIES

Consolidated Balance Sheets

December 31,

2007

2006

Current Assets:

ASSETS

Cash and cash equivalents . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Marketable securities . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Accounts receivable . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Prepaid expenses and other current assets . . . . . . . . . . . . . . . . . . . . . . . . . .

$ 17,396,599
24,062,577
230,467
349,453

$ 18,829,332
17,826,675
1,315,412
541,182

Total current assets . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

42,039,096

38,512,601

Property and equipment, net . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Long-term investment—restricted . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Goodwill . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Other assets, net

2,577,602
210,007
8,982,000
7,980

4,393,604
201,844
8,982,000
178,204

$ 53,816,685

$ 52,268,253

LIABILITIES AND STOCKHOLDERS’ EQUITY

Current Liabilities:

Debt, current portion . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Accounts payable . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Accrued liabilities . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Deferred revenue, current portion . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

$

Total current liabilities . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Debt obligations, net of current portion . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Deferred revenue, net of current portion . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Other long-term liabilities . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

$

403,832
3,222,091
1,150,931
1,852,518

6,629,372
—
—
342,750

1,246,289
1,461,195
1,529,337
1,755,160

5,991,981
733,333
9,131,673
514,127

Total liabilities . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

6,972,122

16,371,114

Commitments (Notes 8 and 9)
Stockholders’ Equity:

Common stock, $0.01 par value—125,000,000 shares authorized;

64,288,793 and 63,241,086 shares issued and outstanding, respectively,
at December 31, 2007 and 50,381,561 and 49,333,854 shares issued
and outstanding, respectively, at December 31, 2006 . . . . . . . . . . . . . . .
Additional paid-in capital . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Treasury stock (at cost, 1,047,707 shares) . . . . . . . . . . . . . . . . . . . . . . . . . .
Deferred compensation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Accumulated deficit . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Accumulated other comprehensive income . . . . . . . . . . . . . . . . . . . . . . . . .

642,888
742,903,399
(891,274)
(46,286)
(695,847,738)
83,574

503,816
725,271,688
(891,274)
(111,390)
(688,883,495)
7,794

Total stockholders’ equity . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

46,844,563

35,897,139

$ 53,816,685

$ 52,268,253

The accompanying notes are an integral part of these consolidated financial statements.

62

CURIS, INC. AND SUBSIDIARIES

Consolidated Statements of Operations and Comprehensive Loss

Years Ended December 31,

2007

2006

2005

Revenues:

Research and development contracts . . . . . . . . . . . . . . . . . . . .
License fees . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Substantive milestones . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

$ 3,261,643
13,126,911
—

$ 9,339,191
4,324,173
3,000,000

$ 10,493,077
2,258,677
250,000

Gross revenues . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Contra-revenues from co-development with Genentech . . . . .

16,388,554
—

16,663,364
(1,727,727)

13,001,754
(6,999,308)

Net revenues . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

16,388,554

14,935,637

6,002,446

Costs and Expenses:

Research and development . . . . . . . . . . . . . . . . . . . . . . . . . . . .
General and administrative . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Amortization related to intangible assets . . . . . . . . . . . . . . . . .

14,779,184
9,983,931
—

14,589,647
10,373,883
27,050

13,705,074
8,089,738
75,072

Total costs and expenses . . . . . . . . . . . . . . . . . . . . . . . . . .

24,763,115

24,990,580

21,869,884

Loss from operations . . . . . . . . . . . . . . . . . . . . . . . . . . . .

(8,374,561)

(10,054,943)

(15,867,438)

Other Income (Expense):

Interest income . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Other income (expense) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Interest expense . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

1,608,805
(113,644)
(84,843)

1,576,949
(155,124)
(196,204)

1,195,727
124,958
(308,419)

Total other income . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

1,410,318

1,225,621

1,012,266

Net loss applicable to common stockholders . . . . . . . . . .

$ (6,964,243) $ (8,829,322) $(14,855,172)

Net Loss per Common Share (Basic and Diluted) . . . . . . . . . . . . . .

$

(0.13) $

(0.18) $

(0.31)

Weighted Average Common Shares (Basic and Diluted) . . . . . . . .

54,914,666

49,066,680

48,074,181

Net Loss . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Unrealized Gain (Loss) on Marketable Securities . . . . . . . . . . . . . .

$ (6,964,243) $ (8,829,322) $(14,855,172)
41,242

47,196

75,780

Comprehensive loss . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

$ (6,888,463) $ (8,782,126) $(14,813,930)

The accompanying notes are an integral part of these consolidated financial statements.

63

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T

CURIS, INC. AND SUBSIDIARIES

Consolidated Statements of Cash Flows

Years Ended December 31,

2007

2006

2005

Cash Flows from Operating Activities:
Net loss . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . $ (6,964,243) $ (8,829,322) $(14,855,172)
Adjustments to reconcile net loss to net cash used in operating activities—
Depreciation and amortization . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Stock-based compensation expense . . . . . . . . . . . . . . . . . . . . . . . . . . .
Reserve on loss of subtenant income . . . . . . . . . . . . . . . . . . . . . . . . . .
Amortization of intangible assets . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Noncash interest expense on notes payable . . . . . . . . . . . . . . . . . . . . .
Impairment on property and equipment . . . . . . . . . . . . . . . . . . . . . . . .
Gain on sale of assets . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Impairment of investment . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Unrealized foreign currency exchange gain . . . . . . . . . . . . . . . . . . . . .
Changes in operating assets and liabilities:

1,302,102
3,190,295
—
—
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352,009
(87,761)
145,000
(26,935)

1,407,620
3,762,015
98,000
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(40,280)

939,619
221,202
500,000
75,072
200,796
—
—
—
—

Accounts receivable . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Prepaid expenses and other assets . . . . . . . . . . . . . . . . . . . . . . . . .
Accounts payable and accrued and other liabilities . . . . . . . . . . .
Deferred contract revenue . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

1,111,880
216,953
1,200,778
(9,034,315)

(272,621)
266,327
(1,603,100)
(1,106,851)

223,949
141,298
1,596,034
2,817,910

Total adjustments . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

(1,629,994)

2,849,711

6,715,880

Net cash used in operating activities . . . . . . . . . . . . . . . . . . .

(8,594,237)

(5,979,611)

(8,139,292)

Cash Flows from Investing Activities:

Purchase of marketable securities . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Sale of marketable securities . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Increase in restricted cash/restricted long-term investments . . . . . . . .
Sale of long-term investments . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Expenditures for property and equipment . . . . . . . . . . . . . . . . . . . . . . .
Net proceeds from sale of assets . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

(37,558,691)
31,398,569
(8,163)
—
(66,469)
316,121

(47,076,284)
51,195,829
(5,846)

(36,184,927)
41,161,182
(2,832)
— 2,606,681
(2,870,637)
—

(694,111)
—

Net cash provided by (used in) investing activities . . . .

(5,918,633)

3,419,588

4,709,467

Cash Flows from Financing Activities:

Proceeds from issuance of common stock, net of issuance costs . . . . .
Proceeds from other issuances of common stock . . . . . . . . . . . . . . . . .
Proceeds from issuance of debt . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Repayments of notes payable and capital leases . . . . . . . . . . . . . . . . . .

14,421,782
223,810
—
(1,565,455)

—
312,391

—
974,781
— 2,585,418
(500,000)

(1,233,334)

Net cash provided by (used in) financing activities . . . . . . .

13,080,137

(920,943)

3,060,199

Net Decrease in Cash and Cash Equivalents . . . . . . . . . . . . . . . . . . . . . . . .
Cash and Cash Equivalents, beginning of period . . . . . . . . . . . . . . . . . . . . .

(1,432,733)
18,829,332

(3,480,966)
22,310,298

(369,626)
22,679,924

Cash and Cash Equivalents, end of period . . . . . . . . . . . . . . . . . . . . . . . . . . $ 17,396,599 $ 18,829,332 $ 22,310,298

Supplemental cash flow data
Cash paid during the year for:

Interest . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . $

95,080 $

209,086 $

144,083

Supplemental Disclosure of Noncash Investing and Financing Activities:
Issuance of common stock in connection with conversion of note

payable to Elan Pharma International, Limited (Note 4(d)) . . . . . . . $

— $

— $ 3,305,523

Issuance of common stock in connection with conversion of note

payable to Becton Dickinson (Note 8) . . . . . . . . . . . . . . . . . . . . . . . $

— $ 2,605,280 $

—

The accompanying notes are an integral part of these consolidated financial statements.

65

CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements

(1) OPERATIONS

Curis, Inc. (the “Company” or “Curis”) is a drug discovery and development company that
is
committed to leveraging its innovative signaling pathway drug technologies in seeking to create new
medicines, primarily for cancer. In expanding the Company’s drug development efforts in the field of
cancer through its targeted cancer drug development platform, Curis is building upon its past
experiences in targeting signaling pathways in the areas of cancer, neurological disease and
cardiovascular disease.

The Company operates in a single reportable segment: developmental biology products. The Company
expects that any successful products would be used in the health care industry and would be regulated
in the United States by the U.S. Food and Drug Administration, or FDA, and in overseas markets by
similar regulatory agencies.

The Company is subject to risks common to companies in the biotechnology industry including, but not
limited to, development by its competitors of new technological innovations, dependence on key
personnel, its ability to protect proprietary technology, its ability to successfully advance discovery and
preclinical stage drug candidates in its internally funded programs, reliance on corporate collaborators
and licensors to successfully research, develop and commercialize products based on the Company’s
technologies, its ability to comply with FDA government regulations and approval requirements as
well as its ability to grow its business and obtain adequate financing to fund this growth.

(2) SUMMARY OF SIGNIFICANT ACCOUNTING POLICIES

(a) USE OF ESTIMATES

The preparation of the Company’s consolidated financial statements in conformity with accounting
principles generally accepted in the United States requires management
to make estimates and
assumptions that affect the reported amounts and disclosure of revenue and certain assets and liabilities
at the balance sheet date. Such estimates include the performance obligations under the Company’s
collaboration agreements,
the carrying value of property and
equipment and intangible assets and the value of certain investments and liabilities. Actual results may
differ from such estimates.

the collectibility of receivables,

(b) CONSOLIDATION

The accompanying consolidated financial statements include the Company and its wholly owned
subsidiaries, Curis Securities Corporation, Inc. and Curis Pharmaceuticals (Shanghai) Co., Ltd., or
Curis Shanghai.

(c) REVENUE RECOGNITION

and

companies

biotechnology

The Company’s business strategy includes entering into collaborative license and development
agreements with
and
pharmaceutical
commercialization of the Company’s product candidates. The terms of the agreements typically include
non-refundable license fees, funding of research and development, payments based upon achievement of
clinical development milestones and royalties on product sales. The Company follows the provisions of
the Securities and Exchange Commission’s Staff Accounting Bulletin (SAB) No. 104 (SAB No. 104),
Revenue Recognition, Emerging Issues Task Force (EITF) Issue No. 00-21 (EITF 00-21), Accounting for
Revenue Arrangements with Multiple Deliverables, EITF Issue No. 99-19 (EITF 99-19), Reporting
Revenue Gross as a Principal Versus Net as an Agent, and EITF Issue No. 01-9 (EITF 01-9), Accounting
for Consideration Given by a Vendor to a Customer (Including a Reseller of the Vendor’s Products).

development

the

for

66

CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

License Fees and Multiple Element Arrangements.

Non-refundable license fees are recognized as revenue when the Company has a contractual right to
receive such payment, the contract price is fixed or determinable, the collection of the resulting
receivable is reasonably assured and the Company has no further performance obligations under the
license agreement. Multiple element arrangements, such as license and development arrangements are
analyzed to determine whether the deliverables, which often include a license and performance
obligations such as research and steering committee services, can be separated or whether they must be
accounted for as a single unit of accounting in accordance with EITF 00-21. The Company recognizes
up-front license payments as revenue upon delivery of the license only if the license has stand-alone
value and the fair value of the undelivered performance obligations, typically including research and/or
steering committee services, can be determined. If the fair value of the undelivered performance
obligations can be determined, such obligations would then be accounted for separately as performed.
If the license is considered to either (i) not have stand-alone value or (ii) have stand-alone value but the
fair value of any of the undelivered performance obligations cannot be determined, the arrangement
would then be accounted for as a single unit of accounting and the license payments and payments for
performance obligations are recognized as revenue over the estimated period of when the performance
obligations are performed.

If the Company is involved in a steering committee as part of a multiple element arrangement that is
accounted for as a single unit of accounting, the Company assesses whether its involvement constitutes
a performance obligation or a right to participate. Steering committee services that are determined to be
performance obligations are combined with other research services or performance obligations required
under an arrangement, if any, in determining the level of effort required in an arrangement and the
period over which the Company expects to complete its aggregate performance obligations.

Whenever the Company determines that an arrangement should be accounted for as a single unit of
accounting, it must determine the period over which the performance obligations will be performed and
revenue will be recognized. Revenue will be recognized using either a relative performance or straight-
line method. The Company recognizes revenue using the relative performance method provided that
the Company can reasonably estimate the level of effort required to complete its performance
obligations under an arrangement and such performance obligations are provided on a best-efforts
basis. Direct labor hours or full-time equivalents are typically used as the measure of performance.
Revenue recognized under the relative performance method would be determined by multiplying the
total payments under the contract, excluding royalties and payments contingent upon achievement of
substantive milestones, by the ratio of level of effort incurred to date to estimated total level of effort
required to complete the Company’s performance obligations under the arrangement. Revenue is
limited to the lesser of the cumulative amount of payments received or the cumulative amount of
revenue earned, as determined using the relative performance method, as of each reporting period.

If the Company cannot reasonably estimate the level of effort required to complete its performance
obligations under an arrangement, the performance obligations are provided on a best-efforts basis and
the Company can reasonably estimate when the performance obligation ceases or the remaining
obligations become inconsequential and perfunctory, then the total payments under the arrangement,
excluding royalties and payments contingent upon achievement of substantive milestones, would be
recognized as revenue on a straight-line basis over the period the Company expects to complete its
performance obligations. Revenue is limited to the lesser of the cumulative amount of payments
received or the cumulative amount of revenue earned, as determined using the straight-line basis, as of
the period ending date.

67

CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

If the Company cannot reasonably estimate when its performance obligation either ceases or becomes
inconsequential and perfunctory, then revenue is deferred until the Company can reasonably estimate
when the performance obligation ceases or becomes inconsequential. Revenue is then recognized over
the remaining estimated period of performance.

Significant management judgment is required in determining the level of effort required under an
arrangement and the period over which the Company is expected to complete its performance
obligations under an arrangement.

Substantive Milestone Payments.

Collaboration agreements may also contain substantive milestone payments. Substantive milestone
payments are considered to be performance bonuses that are recognized upon achievement of the
milestone only if all of the following conditions are met:

•

•

•

•

•

the milestone payments are non-refundable;

achievement of the milestone involves a degree of risk and was not reasonably assured at the
inception of the arrangement;

substantive effort is involved in achieving the milestone;

the amount of the milestone payment is reasonable in relation to the effort expended or the risk
associated with achievement of the milestone; and,

a reasonable amount of time passes between the up-front license payment and the first milestone
payment as well as between each subsequent milestone payment.

Determination as to whether a payment meets the aforementioned conditions involves management’s
judgment. If any of these conditions are not met, the resulting payment would not be considered a
the
substantive milestone, and therefore the resulting payment would be considered part of
consideration for the single unit of accounting and would be recognized as revenue as such
performance obligations are performed under either the relative performance or straight-line methods,
as applicable, and in accordance with these policies as described above. In addition, the determination
that one such payment was not a substantive milestone could prevent the Company from concluding
that subsequent milestone payments were substantive milestones and, as a result, any additional
milestone payments could also be considered part of the consideration for the single unit of accounting
and would be recognized as revenue as such performance obligations are performed under either the
relative performance or straight-line methods, as applicable.

Reimbursement of Costs.

Reimbursement of costs is recognized as revenue provided the provisions of EITF 99-19 are met, the
amounts are determinable and collection of the related receivable is reasonably assured.

Royalty Revenue.

Royalty revenue is recognized upon the sale of the related products, provided that the royalty amounts
are fixed or determinable, collection of the related receivable is reasonably assured and the Company
has no remaining performance obligations under the arrangement. If royalties are received when the
Company has remaining performance obligations, the royalty payments would be attributed to the
services being provided under the arrangement and therefore would be recognized as such performance
obligations are performed under either the relative performance or straight line methods, as applicable,
and in accordance with these policies as described above.

68

CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

Payments by Curis as a Vendor to a Collaborator as a Customer.

For revenue-generating arrangements where the Company, as a vendor, provides consideration to a
licensor or collaborator, as a customer, the Company applies the provisions of EITF 01-9. A payment
to a customer is presumed to be a reduction of the selling price unless the Company receives an
identifiable benefit for the payment and the Company can reasonably estimate the fair value of the
benefit received. Payments to a customer that are deemed a reduction of selling price are recorded first
as a reduction of revenue, to the extent of both cumulative revenue recorded to date and of probable
future revenues, which include any unamortized deferred revenue balances, under all arrangements
with such customer and then as an expense. Payments that are not deemed to be a reduction of selling
price would be recorded as an expense.

Deferred Revenue.

Amounts received prior to satisfying the above revenue recognition criteria are recorded as deferred
revenue in the accompanying consolidated balance sheets. Amounts not expected to be recognized
during the year ending December 31, 2008 are classified as long-term deferred revenue. As of
December 31, 2007, the Company has short-term deferred revenue of $1,853,000 related to its
collaborations (see Note 3). As of December 31, 2007, the Company had no remaining long-term
deferred revenue.

Grant Revenue.

The Company received a grant award during 2004 from the Spinal Muscular Atrophy Foundation,
which terminated November 2006. Revenue under this grant was recognized as the services were
provided and when payment was reasonably assured under the terms of the grant. Grant revenues are
included in the “Research and development contracts” line item in the Revenues section of the
Company’s consolidated statement of operations.

Summary.

During the years ended December 31, 2007, 2006 and 2005, total gross revenues from major customers
as a percent of total gross revenues of the Company were as follows:

Year Ended December 31,

2007

2006

2005

76% 56% 49%
Genentech . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
12% 16% 22%
Wyeth Pharmaceuticals . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
7% 15%
Spinal Muscular Atrophy Foundation . . . . . . . . . . . . . . . . . . . . . . . . —%
Procter & Gamble . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
2%
5%
11%
Micromet AG . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . —% 14% 11%
2% —%
Centocor

. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . —%

(d) RESEARCH AND DEVELOPMENT

Research and development costs, including internal and external costs, are charged to operations as
incurred. Research and development costs include personnel costs, lab supplies, outside services
including medicinal chemistry, consulting agreements, allocations of facility costs and fringe benefits,
and other costs.

69

CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

(e) CASH EQUIVALENTS, MARKETABLE SECURITIES AND LONG-TERM INVESTMENTS

Cash equivalents consist of short-term, highly liquid investments purchased with maturities of three
months or less. All other liquid investments are classified as marketable securities. In accordance with
Statement of Financial Accounting Standards (SFAS) No. 115, Accounting for Certain Investments in
Debt and Equity Securities, all of the Company’s marketable securities have been designated as
available-for-sale and are stated at market value with any unrealized holding gains or losses included as
a component of stockholders’ equity and any realized gains and losses recorded in the statement of
operations in the period the securities are sold.

The amortized cost, unrealized gains and fair value of marketable securities available-for-sale as of
December 31, 2007, with maturity dates ranging between one and 12 months and with a weighted
average maturity of 3.8 months are as follows:

Corporate bonds and notes . . . . . . . . . . . . . . . . .

$23,979,000

$84,000

$24,063,000

Total marketable securities . . . . . . . . . . . . . . . . .

$23,979,000

$84,000

$24,063,000

Amortized
Cost

Unrealized
Gain

Fair Value

The amortized cost, unrealized gains and fair value of marketable securities available-for-sale as of
December 31, 2006, with maturity dates ranging between one and 12 months and with a weighted
average maturity of 2.9 months are as follows:

Corporate bonds and notes . . . . . . . . . . . . . . . . .

$17,819,000

Total marketable securities . . . . . . . . . . . . . . . . .

$17,819,000

$8,000

$8,000

Amortized
Cost

Unrealized
Gain

Fair Value

$17,827,000

$17,827,000

The Company has a restricted long-term investment in the amount of $210,000 and $202,000 at
December 31, 2007 and 2006, respectively. This restricted long-term investment is comprised of a
certificate of deposit pledged as collateral in connection with a facility lease agreement. The restriction
expires on December 31, 2010 unless the Company elects to extend its lease. The Company had no
other long-term investments as of December 31, 2007 or 2006.

(f) FAIR VALUE OF FINANCIAL INSTRUMENTS

The Company’s financial
instruments consist mainly of cash and cash equivalents, marketable
securities, short-term accounts receivable, common stock in privately-held companies, accounts
payable and debt obligations. The estimated fair values of the Company’s financial instruments have
been determined by the Company using available market
information and appropriate valuation
methodologies. The Company maintains cash balances with financial institutions in excess of insured
limits. The Company does not anticipate any losses with respect to such cash balances because the
balances are invested in highly rated securities.

Cash and cash equivalents, short-term accounts receivable and accounts payable are reflected in the
accompanying consolidated financial statements at cost, which approximates fair value due to the
short-term nature of these instruments.

The fair values of marketable securities and short-term investments are based on current quoted market
values. Equity investments in privately-held companies are reflected in the accompanying consolidated

70

CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

financial statements at cost, as adjusted for impairment. As of December 31, 2007, the Company holds
equity investments in two privately-held former collaborators of the Company, Aegera Therapeutics
(“Aegera”) and ES Cell International (“ESI”). On a quarterly basis, the Company reevaluates the book
valuation of its investments in privately-held companies to determine if its carrying value should be
changed.

During the year ended December 31, 2007, the Company determined that the carrying value of ESI’s
stock recorded at the Company’s consolidated balance sheet was in excess of the fair value of the asset.
Accordingly, the Company recorded a charge to “Other expense” of $145,000 by writing down the
carrying value of its investment in ESI equity securities to $5,000 during the year ended December 31,
2007.

During the year ended December 31, 2006, the Company was notified of Aegera’s need to secure
additional financing at a value that was significantly less than the current carrying value of Aegera
stock recorded at the Company’s consolidated balance sheet. The Company believed that the terms of
Aegera’s financing adversely affected the Company’s carrying value of its equity investment in
Aegera. As a result, during the year ended December 31, 2006, the Company recorded a charge to
“Other expense” of $164,000 by writing down the carrying value of its investment in Aegera equity
securities to $3,000.

As of December 31, 2007 and 2006, the value of the Company’s investments in privately-held
companies was $8,000 and $153,000, respectively. These amounts are included in “Deposits and other
assets” in the accompanying Consolidated Balance Sheets.

(g) PROPERTY AND EQUIPMENT

Purchased equipment is recorded at cost. The Company does not currently hold any leased equipment.
Depreciation and amortization are provided on the straight-line method over the estimated useful lives
of the related assets or the remaining terms of the leases, whichever is shorter, as follows:

Asset Classification

Laboratory equipment, computers and software
Leasehold improvements

Office furniture and equipment

Estimated Useful Life

3-5 years
Lesser of life of the lease or the
life of the asset
5 years

(h) LONG-LIVED ASSETS OTHER THAN GOODWILL

Long-lived assets other than goodwill consist of property and equipment, equity investments in certain
of the Company’s former privately-held collaborators, and long-term deposits. The aggregate balances
for these long-lived assets were $2,796,000 and $4,774,000 as of December 31, 2007 and 2006,
respectively. The Company applies SFAS No. 144, Accounting for the Impairment or Disposal of
Long-Lived Assets. If it were determined that the carrying value of the Company’s other long-lived
assets might not be recoverable based upon the existence of one or more indicators of impairment, the
Company would measure an impairment based on application of SFAS No. 144 (see Notes 2(f) and 6).
During the years ended December 31, 2007 and 2006, the Company recognized an impairment charge
of $352,000 and $148,000, respectively, related to certain equipment with no current or planned future
use. This equipment was previously used in certain of the Company’s discovery programs.

71

CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

(i) GOODWILL

As of December 31, 2007 and 2006, the Company had recorded goodwill of $8,982,000. Effective
January 1, 2002, the Company applied the provisions of SFAS No. 142, Goodwill and Other Intangible
Assets. During each of December 2007, 2006 and 2005, the Company completed its annual goodwill
impairment tests and determined that the Company represented a single reporting unit under SFAS 142
and as of those dates the fair value of the Company exceeded the carrying value of its net assets.
Accordingly, no goodwill impairment was recognized for the years ended December 31, 2007, 2006
and 2005.

(j) TREASURY STOCK

On May 31, 2002, the Company announced that its Board of Directors had approved the repurchase of
up to $3,000,000 of the Company’s common stock. Such purchases can be made from time to time, at
the discretion of certain members of the Company’s management. The Company accounts for its
common stock repurchases as treasury stock under the cost method. The repurchased stock provides the
Company with treasury shares for general corporate purposes, such as stock to be issued under
employee stock option and stock purchase plans. In 2002, the Company repurchased 1,047,707 shares
of its common stock at a cost of $891,000 pursuant to this repurchase program. The Company has not
purchased any shares since 2002.

(k) BASIC AND DILUTED LOSS PER COMMON SHARE

The Company applies SFAS No. 128, Earnings per Share, which establishes standards for computing
and presenting earnings per share. Basic and diluted net losses per share were determined by dividing
net loss by the weighted average common shares outstanding during the period. Diluted net loss per
common share is the same as basic net loss per common share for all periods presented, as the effect of
the potential common stock equivalents is antidilutive due to the Company’s net loss position for all
periods presented. Antidilutive securities consist of convertible debt outstanding throughout 2005,
stock options, which are weighted based on the number of days outstanding during the respective
reporting period, and warrants and shares issuable under the Company’s 2000 Employee Stock
Purchase Plan. Antidilutive securities were 15,371,793, 9,561,899 and 11,743,926 as of December 31,
2007, 2006 and 2005, respectively, consisting of the following:

For the years ended December 31,

2007

2006

2005

Weighted average stock options outstanding . . . .
Warrants outstanding . . . . . . . . . . . . . . . . . . . . . . .
Shares issuable under ESPP . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . .
Convertible debt

8,969,102
6,399,271
3,420
—

7,913,407
1,630,976
17,516
—

9,340,769
1,680,976
6,070
716,111

Total antidilutive securities . . . . . . . . . . . . . . . . . .

15,371,793

9,561,899

11,743,926

(l) STOCK-BASED COMPENSATION

On January 1, 2006, the Company adopted Statement of Financial Accounting Standards (SFAS)
No. 123 (revised 2004), Share-Based Payment (SFAS 123(R)), which establishes standards for the
accounting of transactions in which an entity exchanges its equity instruments for goods or services.
SFAS 123(R) focuses primarily on accounting for transactions in which an entity obtains employee
services in share-based payment transactions. SFAS 123(R) requires that the fair value of such equity

72

CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

instruments be recognized as an expense in the financial statements as services are performed. Prior to
January 1, 2006, the Company accounted for employee share-based payments under the recognition
and measurement provisions of Accounting Principles Board Opinion No. 25, Accounting for Stock
Issued to Employees (APB 25), and related Interpretations, as permitted by SFAS Statement No. 123,
Accounting for Stock-Based Compensation (SFAS 123). In accordance with APB 25, no compensation
cost was required to be recognized for options granted to employees that had an exercise price equal to
the market value of the underlying common stock on the date of grant and only certain pro forma
disclosures were required.

The Company adopted SFAS 123(R) using the modified-prospective-transition method. Under that
transition method, compensation cost recognized for the years ended December 31, 2007 and 2006
includes (i) compensation cost for all share-based payments granted prior to January 1, 2006, but not
yet vested at that date, based on the grant-date fair value estimated in accordance with the original
provisions of SFAS 123; and (ii) compensation cost for all share-based payments granted subsequent to
January 1, 2006, based on the grant-date fair value estimated in accordance with the provisions of
SFAS 123(R). The results for the prior periods have not been restated.

Effective January 1, 2006, the Company adopted the straight-line attribution method for recognizing
compensation expense. Previously, under the pro forma disclosure-only provisions of SFAS 123, the
Company used the straight-line attribution method for expense recognition. For all unvested options
outstanding as of January 1, 2006, the previously measured but unrecognized pro forma compensation
expense, based on the fair value at the original grant date, will be recognized on a straight-line basis
over the remaining vesting period. For share-based payments granted subsequent to January 1, 2006,
compensation expense, based on the fair value on the date of grant, will be recognized on a straight-line
basis over the vesting period.

(m) OPERATING LEASES

As of December 31, 2007, the Company has one facility located at 45 Moulton Street in Cambridge,
Massachusetts under a noncancellable operating lease agreement for office and laboratory space. The
rent payments for this facility escalate over the lease term and the Company expenses its obligations
under this lease agreement on a straight-line basis over the term of the lease (see Note 9(a)).

The following table summarizes changes in the reserve for the loss of subtenant income for the
Company’s 61 Moulton Street sublet space, for which the subtenant defaulted in August 2006, included
under “Accrued liabilities” within “Current liabilities” in the Company’s consolidated balance sheet for
the respective periods:

Reserve balance at December 31, 2005 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Changes for the year ending December 31, 2006:
Amounts charged against the reserve . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Increases to the reserve . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

$(500,000)

353,000
(98,000)

Reserve balance at December 31, 2006 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

(245,000)

Changes for the year ending December 31, 2007:
Amounts charged against the reserve . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Increases to the reserve . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Reversal of excess reserve . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

271,000
(50,000)
24,000

Reserve balance at December 31, 2007 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

$

—

73

CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

(n) DERIVATIVE INSTRUMENTS AND HEDGING ACTIVITIES

SFAS No. 133, Accounting for Derivative Instruments and Hedging Activities, as amended by SFAS
No. 137, SFAS No. 138 and SFAS No. 149, establishes accounting and reporting standards for
derivative instruments, including certain derivative instruments embedded in other contracts, and for
hedging activities. As of December 31, 2007, 2006 and 2005, the Company did not have any derivative
instruments.

(o) NEW ACCOUNTING PRONOUNCEMENTS

In February 2007, the FASB issued Statement of Financial Accounting Standards No. 159 (“SFAS
No. 159”), The Fair Value Option for Financial Assets and Financial Liabilities. SFAS No 159, which
amends SFAS No. 115, allows certain financial assets and liabilities to be recognized, at
the
Company’s election, at fair market value, with any gains or losses for the period recorded in the
statement of income. SFAS No. 159 includes available-for-sales securities in the assets eligible for this
treatment. Currently, the Company records the gains or losses for the period in the statement of
comprehensive income and in the equity section of the balance sheet. SFAS No. 159 is effective for
fiscal years beginning after November 15, 2007, and interim periods in those fiscal years. While the
Company is currently evaluating the provisions of SFAS No. 159, the adoption is not expected to have
a material impact on its consolidated financial statements.

In June 2007, the FASB issued EITF Issue No. 07-3 (“EITF 07-3”), Accounting for Advance Payments
for Goods or Services to Be Used in Future Research and Development Activities. EITF 07-3 is limited
to non-refundable advance payments for goods and services to be used or rendered in future research
and development activities pursuant to an executory contractual arrangement. The EITF affirms that
these payments should be capitalized and deferred until the goods have been delivered or the related
services have been performed. EITF 07-3 is effective for fiscal years beginning after December 15,
2007, and interim periods in those fiscal years. The Company does not expect the adoption of EITF
07-3 to have a material impact on its consolidated financial statements.

(3) RESEARCH AND DEVELOPMENT COLLABORATIONS

(a) GENENTECH, INC. JUNE 2003 COLLABORATION

(i) Agreement Summary

In June 2003, the Company licensed its proprietary Hedgehog pathway technologies to Genentech for
human therapeutic use. The primary focus of the collaborative research plan has been to develop
molecules that inhibit, or antagonize, the Hedgehog pathway for the treatment of various cancers. The
collaboration consists of two programs: the development of a small molecule Hedgehog antagonist
formulated for the topical treatment for basal cell carcinoma; and the development of systemically
administered small molecule and antibody Hedgehog antagonists for the treatment of certain other
solid tumor cancers. Under this second program, Genentech is currently conducting a Phase I clinical
trial of a compound under the collaboration and has indicated that it expects to commence Phase II
clinical testing of such compound in one or more solid tumor indications in 2008.

Pursuant to the agreement, Genentech made an up-front payment of $8,500,000, which consisted of a
$3,509,000 non-refundable license fee payment and $4,991,000 in exchange for shares of the
Company’s common stock. Genentech also made license maintenance fee payments totaling
$4,000,000 over the first two years of the collaboration and agreed to pay additional contingent cash,
assuming specified clinical development and regulatory approval objectives are met. To date, the
Company has received a total of $6,000,000 in such contingent cash payments for the achievement of

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CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

development objectives under the agreement. In addition, Genentech agreed to pay a royalty on
potential future net product sales, which increases with increasing sales volume.

As a result of its licensing agreements with various universities, the Company is obligated to make
payments to these university licensors when certain payments are received from Genentech. Such
licensors were paid an aggregate of $300,000 in connection with the Company’s receipt of contingent
cash payments from Genentech.

The collaboration agreement provides the Company with the option to co-develop topically
administered Hedgehog antagonist products in the field of basal cell carcinoma in the U.S. In January
2005, the Company exercised this co-development option and, until August 31, 2006, the Company
shared equally in the U.S. development costs of this product candidate. Development of this topically
administered basal cell carcinoma product candidate was governed by a co-development steering
steering committee terminated when the parties ended the
committee. The co-development
co-development arrangement. In July 2006, the Company and Genentech elected to halt clinical
development of this product candidate. Effective August 31, 2006, the Company elected to cease its
co-development participation and Genentech became solely responsible for all future costs and
its co-development
development decisions
participation, the Company has not incurred any additional co-development costs or internal costs for a
topically administered basal cell carcinoma product candidate. Should Genentech determine to develop
a topically administered Hedgehog antagonist for the treatment of basal cell carcinoma, the Company
would be eligible for cash payments on the achievement of certain future clinical development
objectives as well as a royalty on future product sales, if any.

regarding the program. Since the termination of

In addition to the co-development of a topically administered Hedgehog antagonist product in the field
of basal cell carcinoma, the collaboration provides for the development of systemically administered
small molecule and antibody Hedgehog antagonists for the treatment of cancer. The development of
these programs is governed by a joint steering committee which is comprised of an equal number of
representatives from both the Company and Genentech to oversee the research, development and
commercialization and other efforts around these programs. Each member of the joint steering
committee receives the right to cast one vote, but Genentech has the final decision making authority in
most matters. The joint steering committee was required to meet on at least a quarterly basis until the
filing of the first investigational new drug, or IND, application for a Hedgehog antagonist product
candidate, which occurred in October 2006. After such filing, the joint steering committee shall meet as
often as it deems necessary or at least semi-annually and shall exist as long as any compound under the
collaboration is being developed or commercialized in accordance with the contract terms.

Unless terminated earlier, the agreement shall expire six months after the later of the expiration of
Genentech’s obligation to pay royalties to the Company under the agreement or such time as no
activities have occurred under the agreement for a period of twelve months. Early termination
provisions are as follows:

(i) Either the Company or Genentech may terminate the agreement upon sixty days written notice for
cause upon either the occurrence of bankruptcy, insolvency, dissolution, winding up, or upon the
breach of any material provision of this agreement by the other party, provided such breach is not
cured by the other party within the sixty day period following written notice of termination by the
other party.

(ii)

If Genentech terminates the agreement for cause, all licenses granted by Genentech to the
Company automatically terminate and revert to Genentech and specified licenses granted by Curis
to Genentech shall survive so long as Genentech is not then in breach under the Agreement. The

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CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

consideration for any product that the Company shares gross profits and losses with Genentech
through a co-development structure (i.e., the basal cell carcinoma product candidate) will be
modified so that the Company will no longer receive its share of gross profits and losses. The
Company will instead receive clinical development and drug approval milestones and royalties on
product sales for such product.

(iii) If the Company terminates the agreement for cause or Genentech terminates the agreement
without cause, all licenses granted by the Company to Genentech automatically terminate and
revert to the Company and specified licenses granted by Genentech to the Company shall survive
so long as the Company is not then in breach under the Agreement. At the time of such
termination, Genentech shall no longer conduct any development or commercialization activities
on any compounds identified during the course of the agreement for so long as such compounds
continue to be covered by valid patent claims.

(ii) Accounting Summary

The Company considers its June 2003 arrangement with Genentech to be a revenue arrangement with
multiple deliverables. The Company’s deliverables under this collaboration include an exclusive
license to its Hedgehog antagonist technologies, research and development services for the first two
years of
the collaboration, and participation on both the joint steering committee and the
co-development steering committee. The Company applied the provisions of EITF 00-21 to determine
whether the performance obligations under this collaboration could be accounted for separately or
should be accounted for as a single unit of accounting. The Company determined that the deliverables,
specifically, the license, research and development services and steering committee participation,
represented a single unit of accounting because the Company believes that the license, although
delivered at the inception of the arrangement, did not have stand-alone value to Genentech without the
Company’s research and development services and steering committee participation. In addition,
objective and reliable evidence of the fair value of the Company’s research and development services
and steering committee participation could not be determined.

The Company attributed the $3,509,000 up-front fee and the $4,000,000 of maintenance fees to the
undelivered research and development services and steering committee participation. The Company did
not consider the $4,000,000 in maintenance fees to be substantive milestone payments because receipt
of the maintenance fee payments did not meet each of the criteria set forth in the Company’s revenue
recognition policy related to substantive milestones (see Note 2(c)).

As of December 31, 2006, the Company had completed the delivery of (i) the license, (ii) the research
and development services and (iii) its participation on the co-development steering committee.
Therefore, as of December 31, 2006, the Company’s sole remaining performance obligation under this
collaboration consisted of participation on the joint steering committee. The agreement provides that
the joint steering committee shall exist for so long as any compound subject to this collaboration is
being developed or commercialized by either of the parties. As of December 31, 2006, the Company
had deferred the $7,509,000 in up-front license fee and maintenance fee payments because, at that time,
it could not reasonably estimate the period of performance of its steering committee obligation or when
the steering committee obligation would become inconsequential or perfunctory.

Since submission of the IND application in October 2006, Genentech has independently pursued
further clinical development of a lead compound and has not sought to involve the Company in the
development of the systemically administered small molecule and antibody Hedgehog antagonist
research and development efforts, all of which are being conducted exclusively by Genentech. Further,
the Company terminated all internal research activities involving Hedgehog antagonists immediately
upon the conclusion of the research funding in December 2006.

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CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

Genentech manages all aspects of research and development of Hedgehog antagonists covered by this
collaboration. Genentech designed, enrolled and continues to manage all aspects of the ongoing Phase I
clinical trial of a small molecule Hedgehog antagonist. The Company has not been involved in the
development of this program subsequent to the IND submission in October 2006 and expects that it
will not be involved in the development plans in the future. During the fourth quarter of 2007,
Genentech informed the Company that it had initiated enrollment in an expansion cohort in an ongoing
Phase I clinical trial and that it plans to progress the Phase I Hedgehog antagonist into Phase II clinical
testing in 2008. The Company’s input was not sought on these development decisions and the
Company does not expect that Genentech would seek the Company’s input in the future on any
program covered under this collaboration. Going forward, the Company estimates that its involvement
in the joint steering committee will be limited to participation in up to two joint steering committee
meetings per year, and the Company does not expect that it will provide substantive input at these
meetings. Rather, the Company expects that it will use the periodic joint steering committee meetings
as a means of receiving updates on the development of Hedgehog antagonists that is underway at
Genentech. Since submission of the IND application in October 2006, there have been two steering
committee meetings, each convened at the request of the Company.

Accordingly, during the fourth quarter of 2007, in consideration of Genentech’s development progress
without assistance from the Company, including limited participation by either party on the joint
steering committee in 2007, the Company reassessed its participation on the joint steering committee.
As a result of this reassessment, the Company concluded that its participation in the joint steering
committee had become inconsequential and perfunctory. Specifically, the Company believes that its
participation on the joint steering committee is no longer essential to the current or future development
of Hedgehog antagonist compounds under collaboration with Genentech, and the fair value or cost, if
any, of completing the Company’s obligation is insignificant in relation to the non-refundable up-front
license fee and maintenance payments received from Genentech that have been allocated to the single
unit of accounting. As a result, the Company recorded the $7,509,000 in up-front license fee and
maintenance fee payments as license revenues for the year ended December 31, 2007.

In October 2006, Genentech filed an IND application with the FDA to initiate Phase I clinical testing of
a systemically administered small molecule Hedgehog antagonist for the treatment of cancer, which
triggered a contingent cash payment of $3,000,000 by Genentech. The Company has recorded this
amount as revenue in “Substantive milestones” in the Revenues section of its Consolidated Statement
of Operations for the year ended December 31, 2006 since the successful achievement of these
objectives meets each of the criteria set forth in the Company’s revenue recognition policy related to
substantive milestones.

In October 2007,
the Company received a payment of $3,000,000 from Genentech upon the
achievement of a Phase II clinical development objective under the agreement. This payment did not
meet the criteria to be classified as a substantive milestone, and the Company has recorded this amount
as revenue within “License Fees” in the Revenues section of its Consolidated Statement of Operations
for the year ended December 31, 2007.

During the years ended December 31, 2007, 2006 and 2005, the Company also recorded revenue within
“Research and development contracts” of $322,000, $202,000 and $120,000, respectively, as revenue
related to expenses incurred on behalf of Genentech that were paid by the Company and for which
Genentech is obligated to reimburse the Company. The Company will continue to recognize revenue
for expense reimbursement as such reimbursable expenses are incurred, provided that the provisions of
EITF 99-19 are met. As of December 31, 2007, the Company had recorded $105,000 as amounts
receivable from Genentech under this collaboration in “Accounts receivable” in the Company’s
Current Assets section of its Consolidated Balance Sheets.

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CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

The Company’s right to co-develop the Hedgehog antagonist products in the field of basal cell
carcinoma was not considered a deliverable under EITF 00-21, was exercisable only at the Company’s
option and, therefore, did not impact the initial accounting for this arrangement. As a result of the
Company’s decision to exercise its right to co-development the basal cell carcinoma product candidate,
the Company made significant cash payments to Genentech through August 31, 2006, which is the date
the Company ceased its participation in co-development. As of August 31, 2006, Genentech will be
solely responsible for all future costs and development decisions regarding the basal cell carcinoma
program. The Company has recorded $1,728,000 and $6,999,000 in co-development payments to
Genentech for the years ended December 31, 2006 and 2005, respectively, as contra-revenues at its
Consolidated Statement of Operations. The Company does not expect to incur any additional costs
related to co-development of this drug candidate.

(b) GENENTECH, INC. DECEMBER 2004 AGREEMENT

(i) Agreement Summary

On December 10, 2004, the Company entered into an amendment to its June 2003 agreement with
Genentech.

The December 2004 amendment, effective from June 12, 2004 to June 11, 2005, increased the
Company’s commitment of full-time equivalents providing research and development services for the
systemic Hedgehog antagonist program from eight to sixteen and increased Genentech’s funding
commitment from $2,000,000 to $4,000,000 for this period. The agreement also provided for the
Company to provide xenograft tumor samples to Genentech during the period from June 12, 2004 to
June 11, 2005, for which Genentech paid the Company $100,000 in December 2004. In addition, the
second $2,000,000 maintenance payment due under the June 2003 arrangement was removed with no
economic effect since it was replaced by a $2,000,000 payment for research services made to the
Company in December 2004. The remaining $2,000,000 for research services provided from
December 12, 2004 through June 11, 2005 was paid in June 2005.

(ii) Accounting Summary

The Company considered the provisions of EITF 00-21 and determined that this agreement should be
accounted for as a separate agreement and not part of its June 2003 agreement since it was not
contemplated at the time of the June 2003 arrangement, was separately negotiated in order to increase
the number of full-time equivalents providing research and development services, included a separate
performance obligation for the Company to provide xenograft tumor samples to Genentech, and was
not entered into at or near the time of the June 2003 agreement. The Company’s performance
obligations under this agreement were to provide research services and xenograft tumor samples to
Genentech through June 2005. The Company applied the provisions of SAB No. 104 and recognized
the incremental funding as revenues under this collaboration as the incremental research services were
performed from December 2004 through June 2005. The amount payable to the Company and,
accordingly, the amount of revenue recognized was based on the actual number of full-time equivalents
through June 2005. During the year ended
providing research services under this agreement
December 31, 2005, the Company recorded $1,674,000 related to its research and development
services under this agreement as revenue in “Research and development contracts” in the Company’s
Revenues section of its Consolidated Statement of Operations. No revenues were recognized under this
the Company had no amounts
agreement with Genentech in 2006. As of December 31, 2007,
receivable from Genentech under this collaboration in “Accounts receivable” in the Company’s
Current Assets section of its Consolidated Balance Sheets.

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CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

(c) GENENTECH, INC. APRIL 2005 AGREEMENT

(i) Agreement Summary

Effective April 11, 2005, the Company entered into a second amendment to its June 2003 agreement
with Genentech. Under the terms of the amendment, Genentech agreed to provide the Company with
up to $2,000,000 of funding to continue development of therapeutics to treat solid tumor cancers, and
the research term was extended from June 11, 2005 to December 11, 2005, at which time the
$2,000,000 was paid. At Genentech’s option, the research term would be extended for an additional
six-month period to June 11, 2006, upon written notice delivered to the Company by October 2005.
Genentech notified the Company in October 2005 of its decision to extend the research term, and
agreed to fund up to ten Curis full-time equivalents through June 11, 2006. Genentech paid the
Company $1,250,000 in June 2006. Other than the change to the period of the research term and
payments associated with such research, the amendment did not change the terms of the June 2003
agreement, which remains in full force and effect.

(ii) Accounting Summary

The Company considered the provisions of EITF 00-21 and determined that this agreement is a
separate contract from its June 2003 agreement, and a previous amendment entered into between the
Company and Genentech in December 2004, since it was not contemplated at the time of the June 2003
arrangement, was separately negotiated in order to increase the number of full-time equivalent
providing research and development services and to provide xenograft tumor samples to Genentech,
and was not entered into at or near the time of the June 2003 agreement. The Company’s performance
obligations under this agreement were to provide research services and xenograft tumor samples to
Genentech through June 11, 2006. Since Genentech elected to exercise its option and extend the
research services, the Company’s performance obligations extended for an additional period from
December 2005 through June 2006. The Company has applied the provisions of SAB No. 104 and
recognized the research funding as revenues under this collaboration as such research services were
performed. The amount payable to the Company and, accordingly, the amount of revenue recognized
was based on the actual number of full-time equivalents providing research services under this
agreement through June 2006. During the years ended December 31, 2006 and 2005, the Company
recorded $898,000 and $2,212,000 related to its research and development services under this
agreement as revenue in “Research and development contracts” in the Company’s Revenues section of
its Consolidated Statement of Operations. No revenues were recognized under this agreement with
Genentech in 2004. As of December 31, 2007, the Company had no amounts receivable from
Genentech under this collaboration in “Accounts receivable” in the Company’s Current Assets section
of its Consolidated Balance Sheets.

(d) GENENTECH, INC. MAY 2006 AGREEMENT

(i) Agreement Summary

the Company entered into a third amendment

In May 2006,
to its June 2003 agreement with
Genentech. The May 2006 amendment, effective from June 12, 2006 to December 11, 2006, provided
for up to seven of the Company’s full-time equivalent researchers to provide research and development
services, in exchange for up to an additional $918,750, payable quarterly in advance. The agreement
also provided Genentech with the option to request that the Company provide up to seven full-time
equivalent researchers to perform research services during the period of December 12, 2006 until
June 11, 2007. Genentech did not exercise this option, and funding for research services on this
program ceased on December 11, 2006.

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CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

(ii) Accounting Summary

The Company considered the provisions of EITF 00-21 and determined that this agreement is a
separate contract from its June 2003 agreement, and previous amendments entered into between the
Company and Genentech in December 2004 and April 2005, since it was not contemplated at the time
of the June 2003 arrangement, was separately negotiated in order to extend the term in which full-time
equivalents would provide research and development services and to provide xenograft tumor samples
to Genentech, and was not entered into at or near the time of the June 2003 agreement. The Company’s
performance obligations under this agreement were to provide research services and xenograft tumor
samples to Genentech through December 11, 2006. The Company applied the provisions of SAB
No. 104 and recognized the research funding as revenues under this collaboration as such research
services were performed. The amount payable to the Company and, accordingly, the amount of revenue
recognized was based on the actual number of full-time equivalents providing research services under
this agreement through December 2006. During the year ended December 31, 2006, the Company
recorded $842,000 related to its research and development services under this agreement as revenue in
“Research and development contracts” in the Company’s Revenues section of its Consolidated
Statement of Operations. No revenues were recognized under this agreement with Genentech in 2005
or 2004. As of December 31, 2007, the Company had no amounts receivable from Genentech under
this collaboration.

(e) WYETH PHARMACEUTICALS

(i) Agreement Summary

On January 12, 2004, the Company licensed its Hedgehog proteins and small molecule Hedgehog
pathway agonists to Wyeth Pharmaceuticals, or Wyeth, for therapeutic applications in the treatment of
neurological and other disorders. Pursuant to the collaboration agreement, Wyeth agreed to make
specified cash payments, including up-front payments of $3,000,000, which consisted of a $1,362,000
non-refundable license fee payment and $1,638,000 in exchange for 315,524 shares of the Company’s
common stock.

On March 7, 2008, Wyeth provided the Company with written notice that it will terminate this license
agreement effective May 6, 2008. On the termination date, the licenses granted by the Company to
Wyeth shall terminate and all terminated license rights will revert to the Company. The Company
intends to seek to license this technology to a third party collaborator.

In addition, as part of a termination agreement entered into between the Company and Elan
Corporation, the Company paid Elan royalty payments related to any revenues in excess of the first
$1,500,000 received by the Company from Wyeth, other
than revenues received as direct
reimbursement for research, development and other expenses that the Company receive from Wyeth.
The Company was also obligated to make payments to various university licensors when certain
payments were received from Wyeth. These obligations totaled $163,000 in payments to Elan and
university licensors for the up-front license fee and substantive milestone payment received through
December 31, 2007.

(ii) Accounting Summary

The Company considered its arrangement with Wyeth to be a revenue arrangement with multiple
deliverables, or performance obligations. The Company’s performance obligations under
this
collaboration included an exclusive license to its Hedgehog agonist technologies and performing

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CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

services, including research and development services for at least two years and participation on a
steering committee. The Company applied the provisions of EITF 00-21 to determine whether the
performance obligations under this collaboration could be accounted for separately or as a single unit
or multiple units of accounting. The Company determined that
these performance obligations
represented a single unit of accounting, research and steering committee services, since the Company
believed that the license did not have stand-alone value to Wyeth without its research services and
steering committee participation and because objective and reliable evidence of the fair value of the
Company’s research and steering committee participation could not be determined.

The Company’s ongoing performance obligations under this collaboration consisted of participation on
a steering committee and the performance of research services. Because the Company believed that it
could reasonably estimate its level of effort over the term of the arrangement, the Company accounted
for the arrangement under the relative performance method. In developing its original estimate of the
Company’s level of effort required to complete its performance obligations, the Company estimated
that Wyeth would elect twice to extend the research and development service period and related
funding, each in one-year increments, for a total of four years. The agreement provided for a one-year
evaluation period immediately following the end of the research term, during which time the Company
could have been obligated to serve on the steering committee and could have been required, at Wyeth’s
expense, to perform additional research and development services. The Company originally estimated
it would provide an equal number of full-time equivalents for the four-year research and
that
development service term plus the one-year evaluation period. In developing this estimate,
the
Company assumed that Wyeth would maintain its initially elected number of eight full-time
equivalents throughout the five-year period. The steering committee effort was also expected to be
consistent over the five-year period. On November 3, 2006, Wyeth agreed to extend the research
funding term by one year through February 9, 2008 but elected to fund only five researchers working
on the program through the research term. Accordingly, the Company revised its estimated level of
effort over the remaining performance period. In December 2007, Wyeth informed the Company that it
would not extend the current contractual research funding term beyond February 2008. As a result, the
Company changed its estimated performance period to coincide with the conclusion of the research
term from its original estimate of February 2009. On March 7, 2008, Wyeth provided notice that it was
terminating the agreement.

The $1,362,000 up-front license fee plus $7,250,000, the total amount of research funding which the
Company will be entitled to for providing an average of 7.25 full-time equivalents over the four-year
performance period at a rate of $250,000 each (eight full-time equivalents over the first three years and
five full-time equivalents over the last year), is therefore being attributed to the research services.
Revenue is being recognized as the research services are provided over the remaining performance
period through February 2008 at a rate of $297,000 per full-time equivalent.

During the years ended December 31, 2007, 2006 and 2005, the Company recorded revenue of
$1,968,000, $2,604,000 and $2,849,000, respectively, related to the Company’s research efforts under
the Wyeth arrangement, of which $439,000, $306,000 and $272,000, respectively, were recorded in
“License Fees” and $1,332,000, $2,298,000 and $2,327,000, respectively, were recorded in “Research
and development contracts” in the Company’s Revenues section of its Consolidated Statement of
Operations. Additionally, for the year ended December 31, 2005, the Company recorded $250,000 in
the “Substantive milestones” section of it Consolidated Statement of Operations. Included within
“Research and development contracts”, the Company recorded $197,000, $298,000 and $327,000 for
the years ended December 31, 2007, 2006 and 2005, respectively, as revenue related to expenses
incurred on behalf of Wyeth that were paid by the Company and for which Wyeth is obligated to

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CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

reimburse the Company. The Company will continue to recognize revenue for expense reimbursement
as such reimbursable expenses are incurred, provided that the provisions of EITF 99-19 are met. As of
December 31, 2007, the Company had recorded $77,000 as amounts receivable from Wyeth in
“Accounts receivable” in the Company’s Current Assets section of its Consolidated Balance Sheets.

As of December 31, 2007, the Company has not provided any consideration to Wyeth.

(f) GENENTECH APRIL 2005 WNT DRUG DISCOVERY COLLABORATION

(i) Collaboration Summary

On April 1, 2005, the Company entered into a drug discovery collaboration agreement with Genentech
for the discovery and development of small molecule compounds that modulate the Wnt signaling
pathway. This pathway is believed to play an important role in cell proliferation and is a regulator of
tissue formation and repair, the abnormal activation of which is associated with certain cancers. Under
the terms of the agreement, the Company has granted Genentech an exclusive, royalty-bearing license
to make, use and sell the small molecule compounds that are modulators of the pathway. Curis has
retained the rights for ex vivo cell therapy, except in the areas of oncology and hematopoiesis.

for

and Genentech is primarily responsible

the Company has primary responsibility for research and
Under the terms of the agreement,
development
clinical development,
activities
manufacturing, and commercialization of products that may result from the collaboration. Genentech
paid the Company an up-front license fee of $3,000,000 and paid us $5,270,000 for research and
development activities during the initial two-year research term. Genentech will also make cash
payments to the Company that are contingent upon the successful achievement of certain preclinical
and clinical development objectives and drug approval objectives. Genentech had an option to extend
the initial two-year research term for up to two additional years in one-year increments. In January
2007, Genentech informed the Company that it would not extend the research term beyond the initial
two-year term ending on March 31, 2007. Genentech will also pay the Company royalties on net
product sales if product candidates derived from the collaboration are successfully developed. If
Genentech does not advance drug candidates generated under this collaboration beyond the discovery
the Company is not entitled to receive any future cash payments under this
research stage,
collaboration. The Company can not predict whether Genentech will pursue the further development of
drug candidates under the agreement and/or whether any development objectives for which the
Company may be entitled to a cash payment will be achieved.

(ii) Accounting Summary

The Company considers this arrangement with Genentech to be a revenue arrangement with multiple
deliverables. The Company’s deliverables under this collaboration include an exclusive license to its
technologies in this signaling pathway and certain performance obligations, including research services
for at least two years and participation on a steering committee. The Company applied the provisions of
EITF 00-21 to determine whether the performance obligations under this collaboration can be
accounted for separately or as a single unit or multiple units of accounting. The Company determined
that these deliverables represented a single unit of accounting, since the Company believes that the
license does not have stand-alone value to Genentech without the Company’s research services and
steering committee participation during certain phases of research and because objective and reliable
evidence of the fair value of the Company’s research and steering committee participation could not be
determined.

The Company’s performance obligations under this collaboration consist of participation on a steering
committee and the performance of research services. Because the Company believed that it could

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CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

reasonably estimate its level of effort over the term of the arrangement, the Company accounted for the
arrangement under the relative performance method. In developing its original estimate of the
Company’s level of effort required to complete its performance obligations, the Company estimated
that Genentech would elect twice to extend the research service period and related funding, each in
one-year increments, although there was no assurance Genentech would make such an election. The
Company originally estimated that it would provide an equal number of full-time equivalents for the
four-year research and development service term. In developing this estimate, the Company assumed
that Genentech would maintain its initially elected number of twelve full-time equivalent researchers
throughout the four-year period. The steering committee effort was also expected to be consistent over
the four-year period. The $3,000,000 up-front fee plus $12,000,000, the total amount of research
funding which the Company would be entitled to for providing twelve full-time equivalents at
$250,000 each over four years, was being attributed to the research services.

As a result of Genentech’s decision not to extend the research term, the Company’s estimated
performance period was changed during the fourth quarter of 2006 to coincide with the March 31, 2007
research term end date, and the Company accelerated amortization of the unamortized up-front license
fee and the remaining amount of research funding to which the Company was entitled. Revenue for the
period April 1, 2005 through September 30, 2006 was being recognized as the research services were
provided assuming a four-year term through March 2009 at a rate of $312,500 per full-time equivalent.
Revenue for the period October 1, 2006 through March 31, 2007 was recognized as the research
services were provided at a rate of $562,500 per full-time equivalent, which includes the effects of
accelerating the unamortized up-front license fee.

respectively. Of

The Company recorded revenue under this collaboration of $1,577,000, $4,316,000 and $2,412,000
during the years ended December 31, 2007, 2006 and 2005,
this amount,
approximately $938,000, $1,500,000 and $563,000 was attributed to the amortization of the up-front
license fee and is included in “License fees” within the Revenue section of the Company’s
Consolidated Statement of Operations for the years ended December 31, 2007, 2006 and 2005,
respectively. In addition, the Company recorded $639,000, $2,811,000 and $1,849,000 related to
research services performed by the Company’s full-time equivalent researchers for the years ended
December 31, 2007, 2006 and 2005, respectively, and is included within “Research and development
contracts” within the Revenues section of the Company’s Consolidated Statement of Operations.
During the year ended December 31, 2006, the Company also recorded revenue within “Research and
development contracts” of $5,000 as revenue related to expenses incurred on behalf of Genentech that
were paid by the Company and for which Genentech is obligated to reimburse the Company.

The Company believes that contingent payments tied to preclinical, clinical development and drug
approval objectives under this collaboration would not constitute substantive milestones since the
successful achievement of these objectives would not meet each of the criteria set forth in the
Company’s revenue recognition policy related to substantive milestones. Accordingly, the Company
would recognize such contingent payments as revenue ratably over the remaining performance period
at the time such contingent payment is received. For any future contingent payments received by the
Company,
the Company would have no future deliverables under the agreement because its
performance period ended on March 31, 2007. The Company therefore expects that it would record any
such contingent payments as revenue in “License Fees” in the Company’s Revenues section of its
Consolidated Statement of Operations when the milestones are met.

As of December 31, 2006, the Company had provided cash consideration to Genentech in the form of
co-development payments for the Company’s equal share of U.S. development costs of a basal cell
carcinoma product candidate that is being developed under a separate collaboration with Genentech.
Effective August 31, 2006, the Company elected to cease its participation in the co-development of this

83

CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

drug candidate and, as of August 31, 2006, Genentech will be solely responsible for all future costs and
development decisions regarding the basal cell carcinoma program. As of December 31, 2007, the
Company had no amounts receivable from Genentech under
this collaboration in “Accounts
receivable” in the Company’s Current Assets section of its Consolidated Balance Sheets.

(g) STRYKER

On December 27, 2007, the Company completed a transaction with Stryker, under the terms of which
Stryker paid the Company $1,750,000 in cash in exchange for the sale and assignment of all of the
Company’s remaining BMP assets. As a result of the transaction, Stryker will assume all future costs
subsequent to the December 27, 2007 effective date related to maintenance and prosecution of the
patent portfolio. The Company recorded the $1,750,000 received as short-term deferred revenue in the
Company’s Current Liabilities section of its Consolidated Balance Sheet as of December 31, 2007
because the Company has not delivered all of the assets to Stryker as required by the agreement. The
Company completed the transfer of all assets in the first quarter of 2008, at which time no material
ongoing performance obligations remain under the agreement.

Under the terms of the agreement, the Company is entitled to contingent cash payments related to
certain clinical development and sales objectives, if achieved. The Company believes that these
contingent payments would not constitute substantive milestones since the successful achievement of
these objectives would not meet each of the criteria set forth in the Company’s revenue recognition
policy related to substantive milestones. Accordingly, the Company would recognize such contingent
payments as revenue in “License Fees” in the Company’s Revenues section of its Consolidated
Statement of Operations when the milestones are met because the Company would has no future
deliverables under the agreement.

In connection with its transaction with Stryker, the Company entered into a separate agreement in
December 2007 with a former collaborator, to which the Company had previously licensed a portion of
its BMP technology. In exchange for the rights to transfer the licensed technology to Stryker and to
place previously agreed-upon financial consideration under such transfer, the Company was obligated
to make a one-time payment of $750,000 to the former collaborator, which has been recorded in
“Research and Development” line item of the Costs and Expenses section of the Company’s
Consolidated Statement of Operations for the year ended December 31, 2007. In connection with its
receipt of any contingent payments from Stryker, the Company would also be required to make
payments of up to $14,000,000 to this former third-party collaborator if such payments are made for
product candidates or products that are designed to treat certain indications affecting chronic kidney
disease patients.

(4) FORMER COLLABORATIONS

(a) PROCTER & GAMBLE

(i) Agreement Summary

On September 18, 2005, the Company entered into a collaboration, research and license agreement
with Procter & Gamble to evaluate and seek to develop potential treatments for hair growth regulation
and skin disorders utilizing the Company’s Hedgehog agonist technology.

Under the terms of the agreement, the Company granted Procter & Gamble an exclusive, worldwide,
royalty-bearing license for the development and commercialization of topical dermatological and hair
growth products that incorporate the Company’s Hedgehog agonist technology. In accordance with the
terms of the agreement, the parties agreed to jointly undertake a research program with the goal of

84

CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

identifying one or more compounds to be developed and commercialized by Procter & Gamble. Under
the agreement, Procter & Gamble paid the Company an up-front license fee of $500,000 and agreed to
fund up to $600,000 for two Curis full-time equivalents providing research and development activities
during the initial one-year research term, subject to its termination rights. Procter & Gamble had an
option to extend the initial one-year research term for up to three additional years in one-year
increments, and, in September 2006, Procter & Gamble exercised the option to extend research funding
through September 2007 for one-third of a full-time equivalent for $83,000.

On May 9, 2007, Procter & Gamble notified the Company of Procter & Gamble’s decision to terminate
the collaboration effective November 9, 2007.

(ii) Accounting Summary

The Company considered its arrangement with Procter & Gamble to be a revenue arrangement with
multiple deliverables. The Company’s deliverables under this collaboration included an exclusive
license to evaluate and develop potential treatments for hair growth regulation and skin disorders and
certain performance obligations, including research and development services and participation on at
least one steering committee. The Company applied the provisions of EITF No. 00-21 and determined
that its deliverables represented a single unit of accounting. The Company determined that these
performance obligations represented a single unit of accounting, since the Company believed that the
license did not have stand-alone value to Procter & Gamble without the Company’s research services
and steering committee participation during certain phases of the development process and because
objective and reliable evidence of the fair value of the Company’s research and steering committee
participation could not be determined. Because the Company could not reasonably estimate the total
level of effort required over the performance period, it was recognizing revenue on a straight-line basis
over the performance period, which it had originally estimated to be six years through September 2011.
The original performance period was based on the Company’s expectation that it would exercise a
co-development option under the agreement, which provided that the Company would jointly fund
development costs and participate on a clinical development steering committee through Phase IIb
clinical trials. The steering committee effort was also expected to be consistent over the performance
period. The Company has attributed an aggregate of $2,183,000 to the undelivered research and
steering committee services. This amount is comprised of (i) a $500,000 up-front fee, (ii) $683,000 in
research funding, and (iii) a $1,000,000 contingent cash payment that the Company received in March
2006 upon the achievement of a preclinical development objective.

As a result of Procter & Gamble’s May 9, 2007 decision to terminate the license agreement, the
Company’s estimated performance period was changed during the year ended December 31, 2007 to
coincide with the November 9, 2007 termination date, and the Company accelerated amortization of
the unamortized up-front license fee and the remaining amount of research funding to which the
Company was entitled.

The Company recorded revenue under this collaboration of $1,878,000, $898,000 and $289,000 during
the years ended December 31, 2007, 2006 and 2005, respectively. Of these amounts, $1,242,000,
$235,000 and $24,000 was attributed to the amortization of (i) the up-front license fee and (ii) a
that did not constitute a substantive milestone since the successful
contingent cash payment
achievement of these objectives did not meet each of the criteria set forth in the Company’s revenue
recognition policy related to substantive milestones. These amounts are included in the “License fees”
line item within the Revenues section of the Company’s Consolidated Statement of Operations for the
years ended December 31, 2007, 2006 and 2005. Of the remaining amounts, $548,000, $107,000 and
$28,000 were related to research services performed by the Company’s two full-time equivalents for
the years ended December 31, 2007, 2006 and 2005, respectively, and $88,000, $556,000 and $237,000

85

CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

for the years ended December 31, 2007, 2006 and 2005, respectively, related to expenses incurred on
behalf of Procter & Gamble by the Company for which Procter & Gamble is obligated to reimburse the
Company, and for which the Company believes that the revenue recognition provisions of EITF 99-19
have been met. These amounts are included within the “Research and development contracts” line item
within the Revenues section of the Company’s Consolidated Statement of Operations. As of
December 31, 2007, the Company had recorded $34,000 as amounts receivable from Procter & Gamble
in “Accounts receivable” in the Company’s Current Assets section of its Consolidated Balance Sheets.

As of December 31, 2007, the Company has not provided any consideration, such as payments under
co-development arrangements, to Procter & Gamble.

(b) ORTHO BIOTECH PRODUCTS, L.P.

(i) Agreement Summary

In November 2002, the Company licensed certain of its broad bone morphogenetic protein, or BMP,
technology portfolio to Ortho Biotech Products, L.P.. The transaction related to all of the Company’s
proprietary BMP compounds including BMP-7, which has been studied in animal models as a
treatment for chronic kidney disease and systemic complications, such as renal osteodystrophy, a form
of bone disease, and blood vessel complications that have been associated with chronic kidney disease.
The agreement provided for Ortho Biotech to provide the Company with an up-front payment of
$3,500,000, which was paid in December 2002, and contingent cash payments assuming various
objectives are met.

On May 18, 2007, Ortho Biotech Products provided the Company with written notice that it intended to
terminate the license agreement. Pursuant to the license agreement, the agreement terminated on
August 16, 2007 and the licenses granted by the Company to Ortho Biotech Products terminated. The
Company entered into a transaction with Stryker to continue development of this technology (see
Note 3(g)).

(ii) Accounting Summary

The Company had no deliverables under the license agreement and applied the provisions of SAB
No. 104 for recognizing revenue under this collaboration. The Company recognized the up-front
payment of $3,500,000 as revenue in 2002 because the Company had no continuing performance
obligations under the contract.

The Company has not recognized any revenues under its arrangement with Ortho Biotech for the years
ended December 31, 2007, 2006, or 2005.

As of December 31, 2007, the Company has not provided any consideration to Ortho Biotech Products.

(c) SPINAL MUSCULAR ATROPHY FOUNDATION

(i) Agreement Summary

Effective September 7, 2004, the Company entered into a sponsored research agreement with the
Spinal Muscular Atrophy, or SMA, Foundation. Under the agreement, the SMA Foundation had
committed to grant the Company up to $5,364,000 over a three-year period for the identification of
therapeutic compounds to treat spinal muscular atrophy, a neurological disease. The sponsored research
agreement was terminated by both parties on November 30, 2006, and the Company has no remaining
performance obligations under this grant.

86

CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

(ii) Accounting Summary

The Company’s sole deliverable under this sponsored research agreement was to provide research
services. The Company has applied the provisions of SAB No. 104 for recognizing revenue under this
collaboration. The Company recognized revenues under this collaboration as the services were
performed, since payment was reasonably assured under the terms of the grant. For the years ended
December 31, 2006 and 2005, the Company recognized $1,191,000 and $1,955,000, respectively,
related to its research and development efforts under this sponsored research agreement. These
amounts are included in “Research and development contracts” in the Company’s Revenues section of
its Consolidated Statement of Operations. The Company did not record any revenues under this
agreement for the year ended December 31, 2007.

(d) ELAN INTERNATIONAL SERVICES

On May 16, 2003, the Company and affiliates of Elan Corporation, plc entered into a termination
agreement to conclude the joint venture that the Company and Elan had originally formed in July 2001.
The purpose of the joint venture, called Curis Newco, was to research and develop molecules that
stimulate the Hedgehog signaling pathway in the field of neurology. Prior to the termination, the
Company and Elan owned 80.1% and 19.9%, respectively, of the outstanding shares of Curis Newco.
As a result of the termination, Elan transferred its 19.9% share of Curis Newco to the Company, such
that Curis Newco became a wholly-owned subsidiary of the Company and Curis Newco was
consolidated into the Company’s consolidated financial statements. Curis Newco was dissolved on
November 5, 2004 and is therefore no longer a subsidiary of the Company as of the November 4, 2004
dissolution date.

In July 2001, the Company entered into a convertible note payable with Elan Pharma International
Limited, or EPIL, of which $4,900,000 was outstanding at the May 16, 2003 termination date. As part
of the termination, of the $4,900,000 outstanding, the Company repaid $1,500,000 in cash and EPIL
forgave $400,000. The Company then entered into an amended and restated convertible note payable
with EPIL for the remaining principal amount of $3,000,000. The terms of the amended and restated
convertible note payable were substantially the same as those under the original note payable except
that the interest rate was reduced from 8% to 6% and the conversion rate was increased to $10.00 from
$8.63. On January 7, 2005, EPIL elected to convert the entire balance of its outstanding convertible
note,
into shares of the Company’s common stock. In
accordance with the terms of the amended and restated convertible note payable with EPIL, 330,552
shares of the Company’s common stock were issued to EPIL based on a conversion rate of $10.00 per
share. The Company has no further obligations to EPIL.

totaling $3,305,523,

including interest,

Lastly, as a result of the termination, all rights granted by both the Company and Elan at the formation
of Curis Newco under separate license agreements with Curis Newco terminated. In addition,
intellectual property created by Curis Newco is owned by the Company. According to provisions in the
termination agreement the Company will pay Elan future compensation, in the form of future royalty
payments, in the event of any direct sales or third party commercialization agreements related to certain
compounds.

(e) MICROMET AG

In 2001, the Company entered into three agreements with Micromet including: (i) a purchase and sale
agreement pursuant
to which the Company assigned its single-chain-polypeptide technology to
Micromet in exchange for up-front consideration of $12,146,000, consisting of $8,000,000 in cash,
$3,460,000 in a euro-denominated note receivable, and equity valued by the Company at $686,000,
(ii) a product development agreement and (iii) a target research and license agreement. The note

87

CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

receivable received under the purchase and sale agreement bore interest at 7% and was due and payable
in full on the earlier of (i) the closing date of an initial public offering of Micromet’s shares or
(ii) June 30, 2005. At maturity, the Company had the option to receive either cash or shares of
Micromet common stock. Further, under these agreements, the Company was entitled to receive
royalties on Micromet’s revenues, if any, arising out of the assigned technology, rights to jointly
develop and commercialize future product discoveries, if any, arising out of the product development
agreement and access to other technologies. The product development agreement provided the
Company with the right to (i) jointly fund research to develop antibodies on up to four potential targets
through the proof of principle stage and (ii) jointly fund the development of two such antibody targets
from the proof of principle stage through the completion of Phase I clinical trials.

On October 21, 2004, the Company amended its note receivable with Micromet, and, under the
amended note, Micromet was obligated to pay the Company a total amount of EUR 4,500,000, subject
to certain conditions. As a result of Micromet’s financing in October 2004, the Company received a
EUR 1,250,000 payment in 2004, resulting in a gain of $1,604,000 based on the EURO-to-US dollar
foreign exchange rate on the date of payment. The gain was recorded in other income as it related to a
recovery of previously written-off interest income and foreign exchange gains related to the note.

As a result of completing additional financings in 2005, Micromet made a second payment of EUR
1,250,000 on October 27, 2005, which resulted in a gain of $1,500,000 based on the EUR-to-US dollar
foreign exchange rate on such date. $1,400,000 of the gain was recorded as license fee revenue for the
year ended December 31, 2005 because it represented the recovery of a previously written-off note that
in exchange for the assignment of technology. The
the Company had received from Micromet
remaining $100,000 was recorded in other income as it is related to a recovery of previously written-off
interest income and foreign exchange gains related to the note.

In March 2006, the Company asserted that the conditions precedent to the payment of the remaining
€2,000,000 due under the note receivable had been achieved through Micromet’s merger with
CancerVax, a claim that Micromet disputed. In September 2006, the Company agreed to a court-
proposed settlement agreement with Micromet, pursuant to which Micromet was required to repay the
note receivable in two installments of €1,000,000, on each of November 1, 2006 and May 31, 2007.
Under the terms of the settlement agreement, if Micromet made the second payment on or before
April 30, 2007, the second payment would decrease to €800,000. The Company believed that it was
probable that Micromet would honor its obligation under the court ruling and pay Curis €1,000,000 by
November 1, 2006 and €800,000 by April 30, 2007, to take advantage of the 30-day discount term. As
a result of this recovery of amounts owed under the note, the Company recorded license fee revenues
of $2,284,000 during the year ended December 31, 2006 based on the then Euro-to-U.S. dollar
exchange rate. The first payment of €1,000,000, or $1,252,000, was received on October 17, 2006, and
the second payment of €800,000, or $1,082,000, was received on April 20, 2007. Accordingly, no
additional amounts are due under this note.

(5) STOCK PLANS AND STOCK BASED COMPENSATION

2000 Stock Incentive Plan

In March 2000, the Board of Directors adopted and, in June 2000, the stockholders approved, the 2000
Stock Incentive Plan (the 2000 Plan), which permits the grant of incentive and non-qualified options to
purchase the Company’s common stock as well as the issuance of restricted shares of common stock.
Beginning on January 1, 2001 and continuing through January 1, 2010, the number of shares of
common stock reserved for issuance under the 2000 Plan is automatically increased by the lesser of

88

CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

1,000,000 shares or 4% of outstanding stock on January 1 of each year. As of December 31, 2007, the
number of shares of common stock reserved for issuance under the 2000 Plan is 17,000,000 and
4,724,837 shares are available for grant under the 2000 Plan.

The 2000 Plan permits the granting of incentive and non-qualified stock options and stock awards to
employees, officers, directors, and consultants of the Company and its subsidiaries at prices determined
by the Company’s Board of Directors. Awards of stock may be made to consultants, directors,
employees or officers of the Company and its subsidiaries, and direct purchases of stock may be made
by such individuals also at prices determined by the Board of Directors. Options become exercisable as
determined by the Board of Directors and expire up to 10 years from the date of grant. Awards issued
under the 2000 Plan have generally consisted of stock options that typically vest over a four-year
period and that are issued with exercise prices equal to the closing market price of the Company’s
common stock on the NASDAQ Global Market on the grant date. The Company has, however, also
issued stock options that vest over shorter periods, stock options with performance conditions, as well
as restricted stock and unrestricted stock awards.

During the year ended December 31, 2007, the Company’s Board of Directors granted stock options to
purchase 2,219,000 shares of common stock to the Company’s employees, executive officers and
non-employee directors under the 2000 Plan. Stock options to purchase 930,000 shares of common
stock will vest over a four-year period, stock options to purchase 390,000 shares of common stock will
vest over a two-year period and stock options to purchase 151,500 shares of common stock will vest
one year from their grant date. Stock options to purchase 612,500 shares of common stock were issued
to the executive officers of the Company with a performance condition and will vest on December 6,
2012 or upon the consummation of a collaboration, licensing or other similar agreement regarding
programs under the Company’s targeted cancer drug development platform that includes an up-front
cash payment of at least $10,000,000 excluding any equity investment in the Company, whichever
occurs first, subject to the officer’s continued employment. The remaining stock options to purchase
135,000 shares of common stock were issued to the Company’s non-employee directors and vested on
the date of grant. All of these stock options were issued with exercise prices equal to the closing market
price of the Company’s common stock on the NASDAQ Global Market on the respective grant dates.

In addition, the Company’s non-employee directors were granted a total of 60,000 shares of common
stock under the 2000 Plan at par value, or $0.01 per share. The closing market price of the Company’s
common stock on the NASDAQ Global Market on June 6, 2007, the date of the grant, was $1.39 per
share. There were no restrictions or vesting requirements related to these awards. Accordingly, the
Company recognized $83,000 in compensation expense related to the issuance of the 60,000 shares of
common stock for the year ended December 31, 2007.

During the year ended December 31, 2007, the Company’s Board of Directors granted stock options to
purchase 75,000 shares of common stock under the 2000 Plan to non-employees.

2000 Director Stock Option Plan

In March 2000, the Board of Directors adopted and, in June 2000, the shareholders approved the 2000
Director Stock Option Plan (the 2000 Director Plan). The 2000 Director Plan provides for the grant of
non-qualified options to non-employee directors as follows: (i) upon his or her initial election, each
non-employee director receives an option to purchase 25,000 shares of the Company’s common stock
that vests over a four-year period and that is issued with an exercise price that is equal to the closing
price of the Company’s common stock on the grant date; and (ii) each director receives an annual grant
of a stock option to purchase 5,000 shares of the Company’s common stock that vests and becomes
exercisable upon the grant date and that is issued with an exercise price that is equal to the closing
price of the Company’s common stock on the grant date.

89

CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

During the year ended December 31, 2007, the Company’s Board of Directors granted options to its
Board of Directors to purchase 30,000 shares of common stock under the 2000 Director Plan, which
fully vested on the grant date of June 6, 2007. On December 17, 2007, the Company appointed a new
director to its Board, and, upon joining the Board, the director received an initial grant of options to
purchase 25,000 shares of the Company’s common stock, which will vest in four equal installments
beginning on June 2, 2008 with full vesting on June 2, 2011. The exercise price of each of these
options is equal to the closing market price of the Company’s common stock on the NASDAQ Global
Market on the date of grant. As of December 31, 2007, the number of shares of common stock subject
to issuance under the 2000 Director Plan is 500,000 and there are 50,000 shares available for grant.

2000 Employee Stock Purchase Plan

In March 2000, the Board of Directors adopted and, in June 2000, the stockholders approved, the 2000
Employee Stock Purchase Plan (the ESPP). The Company has reserved 1,000,000 of its shares of
common stock for issuance under the ESPP. Eligible employees may purchase shares at 85% of the
lower closing market price at the beginning or ending date of the purchase period, as defined. The
Company has two six-month purchase periods per year. During the year ended December 31, 2007,
159,547 shares were issued under the ESPP and there are 417,101 shares available for future purchase
under the ESPP.

A summary of stock option activity under the 2000 Plan and the 2000 Director Plan is summarized as
follows:

Weighted
Average
Exercise
Price per
Share

Number of
Shares

Outstanding, December 31, 2006 (5,949,585 exercisable at weighted average price of

$4.11 per share) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Granted—employees . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Granted—non-employees . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Exercised . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Cancelled . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

9,098,968
2,274,000
75,000
(50,663)
(2,156,339)

$3.53
1.38
1.24
1.24
3.79

Outstanding, December 31, 2007 (6,207,111 exercisable at weighted average price of

$3.51 per share) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

9,240,966

$2.93

The table below summarizes options outstanding and exercisable at December 31, 2007:

Exercise Price Range

$ 0.56 - $ 1.34 . . . . . . . . . . . . . . . . . . . . . . . .
2.10 . . . . . . . . . . . . . . . . . . . . . . . .
1.39 -
3.96 . . . . . . . . . . . . . . . . . . . . . . . .
2.11 -
3.97 -
5.89 . . . . . . . . . . . . . . . . . . . . . . . .
6.91 - 17.94 . . . . . . . . . . . . . . . . . . . . . . . .
20.00 - 29.26 . . . . . . . . . . . . . . . . . . . . . . . .

Options Outstanding

Options Exercisable

Weighted
Average
Remaining
Contractual
Life (in years)

Weighted
Average
Exercise Price
per Share

6.47
8.21
4.71
6.44
2.68
2.59

6.61

$ 1.15
1.48
3.00
4.42
12.53
21.89

$ 2.93

Number of
Shares

479,906
1,670,530
2,192,771
1,409,083
442,257
12,564

6,207,111

Weighted
Average
Exercise Price
per Share

$ 1.06
1.54
3.01
4.50
12.53
21.89

$ 3.51

Number of
Shares

809,594
4,013,907
2,212,209
1,750,435
442,257
12,564

9,240,966

90

CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

The aggregate intrinsic value of options outstanding at December 31, 2007 was $112,000, of which
$99,000 related to exercisable options, and the weighted average remaining contractual life of vested
stock options at December 31, 2007 was 5.46 years. The weighted average grant-date fair values of stock
options granted during the years ended December 31, 2007, 2006 and 2005 were $1.10, $1.62 and $2.89,
respectively. As of December 31, 2007, there was approximately $3,765,000, including the impact of
estimated forfeitures, of unrecognized compensation cost related to unvested employee stock option
awards outstanding under the 2000 Plan and 2000 Director Plan that is expected to be recognized as
expense over a weighted average period of 4.08 years. The intrinsic value of employee stock options
exercised during the years ended December 31, 2007, 2006 and 2005 were $13,000, $45,000 and
$949,000, respectively. The total fair value of vested stock options for the years ended December 31,
2007, 2006 and 2005 were $3,300,000, $3,423,000 and $4,814,000, respectively.

In determining the fair value of stock options, the Company generally uses the Black-Scholes option
pricing model. As discussed below, for employee stock options with a market performance condition, the
Company uses a lattice-based option valuation model. The Black-Scholes option pricing model employs
the following key assumptions for employee option grants issued in each of the following years:

Expected term (years)—Employees . . . . . . . . . . . . . . . . . . . .
Expected term (years)—Directors . . . . . . . . . . . . . . . . . . . . . .
Risk-free interest rate . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Expected volatility . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Expected dividend yield . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

Year Ended December 31,

2007

2006

2005

5.5-7.0
7.0

5.5-6.25
5.0

5.0
5.0

3.6-4.9% 4.5-5.2% 3.8%
95%
90-97% 95-102%
None

None

None

For the years ended December 31, 2007 and 2006, the expected terms of the options granted were
calculated using the “simplified approach,” as outlined in Staff Accounting Bulletin (SAB) No. 107,
Share-Based Payments. Using this approach, for grants issued during the years ended December 31,
2007 and 2006, the Company assigned an expected term of 6.25 years for grants with four-year graded
vesting and 5.5 years for grants with one-and two-year vesting. For the year ended December 31, 2005,
the expected term of the options granted was calculated using an estimate of the expected term as
calculated under SFAS 123. The risk-free rate is based on the U.S. Treasury yield curve in effect at the
time of grant.

For the years ended December 31, 2007 and 2006, expected volatility is based on the annualized daily
historical volatility of the Company’s stock price through the end of the reporting period for a time
period consistent with the expected term of a grant. Management believes that the historical volatility
of the Company’s stock price best represents the volatility of the stock price. For the year ended
December 31, 2005, the expected volatility of the options granted was calculated using an estimate of
historical volatility as calculated under SFAS 123. The Company does not anticipate declaring
dividends in the foreseeable future.

The stock price volatility and expected terms utilized in the calculation involve management’s best
estimates at that time, both of which impact the fair value of the option calculated under the Black-
Scholes methodology and, ultimately, the expense that will be recognized over the life of the option.
SFAS 123(R) also requires that the Company recognize compensation expense for only the portion of
options that are expected to vest. Therefore, management calculated an estimated annual pre-vesting
forfeiture rate that is derived from historical employee termination behavior since the inception of the
Company, as adjusted. If the actual number of forfeitures differs from those estimated by management,
additional adjustments to compensation expense may be required in future periods. The Company does
not have a policy to repurchase shares of its common stock upon employee stock option exercises.
Further, no such repurchases have been made.

91

CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

Under SFAS 123(R), the lattice-based model was used to value a limited number of stock options
issued in June 2002 that remained unvested as of January 1, 2006, and that contain a market condition.
These awards accounted for $40,000 and $70,000 of the employee stock-based compensation expense
recorded by the Company for the years ended December 31, 2007 and 2006, respectively. The lattice
model utilizes assumptions including a 7-year expected life, 2.10% risk-free rate, 116% volatility, and
a 0% dividend rate. These awards became fully vested during 2007 and no additional expense related to
these options will be recognized in subsequent periods.

For the years ended December 31, 2007 and 2006, the Company recorded compensation expense
related to its ESPP and calculated the fair value of shares expected to be purchased under the ESPP
using the Black-Scholes model with the following assumptions:

Year Ended December 31,

December 31, 2007

December 31, 2006

Compensation expense recognized under ESPP . . . . .
Expected term . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Risk-free interest rate . . . . . . . . . . . . . . . . . . . . . . . . .
Volatility . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Dividends . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

64,000

$
6months

3.3-5.0%
64-71%
None

80,000

$
6 months

4.6-5.3%
70-85%
None

Stock-based compensation for employees for the years ended December 31, 2007 and 2006 of
$3,105,000 and $3,820,000, respectively, was calculated using the above valuation models and has
been included in the Company’s results of operations. No income tax benefit has been recorded as the
Company has recorded a full valuation allowance and management has concluded that it is not likely
that the net deferred tax asset will be realized (see Note 12). Based on basic and diluted weighted
average shares outstanding of 54,914,666 and 49,066,680 for the years ended December 31, 2007 and
2006, respectively, the effect on the Company’s net loss per share of stock-based compensation
expense recorded under SFAS 123(R) was approximately $0.06 and $0.08 per share.

The following table shows the pro forma effect on the Company’s net income and net income per share
for the year ended December 31, 2005, had compensation expense been determined based upon the fair
value at the grant date for awards consistent with the methodology prescribed by SFAS 123. The pro
forma effect may not be representative of expense in future periods since the estimated fair value of
stock options on the date of grant is amortized to expense over the vesting period, and additional
options may be granted or options may be cancelled in future years:

Net loss applicable to common stockholders as reported . . . . . . . . . . . . . . . .
Add back: employee stock-based compensation included in net loss, as

reported . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

Less: employee stock-based compensation expense determined under fair

Year Ended
December 31,
2005

$(14,855,000)

7,000

value based methods for all awards . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

(4,814,000)

Pro forma net loss . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

$(19,662,000)

Net loss per common share (basic and diluted)—

As reported . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pro forma . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

$

(0.31)
(0.41)

Non-Employee Grants

During the years ended December 31, 2007 and 2006, the Company granted stock options and
unrestricted stock awards to consultants for services. The options were issued at or above their fair

92

CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

market value on the date of grant and have various vesting dates from date of grant, ranging from 9
months to 4 years. In addition, certain non-employee options vested only upon the achievement of
performance objectives. Should the Company terminate the consulting agreements, any unvested
options will be cancelled. Options issued to non-employees are marked-to-market liabilities, which
means that as the Company’s stock price fluctuates, the liability and related expense either increases or
decreases. The Company recognized expense of $85,000 and $214,000 related to non-employee stock
options and stock awards for the years ended December 31, 2007 and 2005, respectively. The Company
reversed expense of $58,000 related to non-employee stock options for the year ended December 31,
2006 as a result of a decline in the Company’s stock price throughout 2006. As of December 31, 2007,
the Company had recorded $46,000 in deferred compensation related to unvested non-employee
options.

For the years ended December 31, 2007, 2006 and 2005, the Company recorded employee and
non-employee stock-based compensation expense to the following line items in its Costs and Expenses
section of the Consolidated Statements of Operations and Comprehensive Loss:

Research and development expenses . . . . . . . . . . .
General and administrative expenses . . . . . . . . . . .

$ 803,000
2,387,000

$1,105,000
2,657,000

$214,000
7,000

Total stock-based compensation expense . . . . . . .

$3,190,000

$3,762,000

$221,000

For the Year ended December 31,

2007

2006

2005

(6) PROPERTY AND EQUIPMENT

Property and equipment consist of the following:

Laboratory equipment, computers and software . . . . . . . . . .
Laboratory equipment and computers under notes

payable . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Leasehold improvements . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Leasehold improvements under notes payable . . . . . . . . . . .
Office furniture and equipment . . . . . . . . . . . . . . . . . . . . . . .

Less—Accumulated depreciation and amortization . . . . . . .

December 31,

2007

2006

$ 3,647,000

$ 7,911,000

777,000
4,619,000
1,623,000
368,000

1,759,000
4,635,000
1,623,000
938,000

11,034,000
(8,456,000)

16,866,000
(12,472,000)

Total . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

$ 2,578,000

$ 4,394,000

The Company recorded depreciation and amortization expense of $1,302,000, $1,408,000 and
$940,000 for the years ended December 31, 2007, 2006 and 2005, respectively.

In the fourth quarter of 2006, the Company initiated a realignment of its research programs, focusing
on later-stage preclinical drug development programs and de-emphasizing its earlier discovery research
programs. The Company revised its estimates of the depreciable lives on the remaining equipment
currently being used in its discovery research programs as a result of two of the Company’s discovery
programs ending: the sponsored research agreement with the SMA Foundation, which ended in the
fourth quarter of 2006, and the April 2005 drug discovery collaboration with Genentech, which ended
in the first quarter of 2007. During the year ended December 31, 2006, the Company recorded property
and equipment impairment charges of $148,000 related to the impairment of assets that had been used
in the Company’s discovery research programs.

93

CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

the Company’s BMP-7 small molecule screening
During the year ended December 31, 2007,
agreement with Centocor (a Johnson & Johnson subsidiary) concluded in accordance with the terms of
contract and was the only remaining discovery research program. The Company determined that it
would not fund the program internally and, as a result, during the year ended December 31, 2007,
recorded property and equipment impairment charges of $352,000, net of estimated proceeds from the
sale of these assets, because this discovery equipment could not be used on other ongoing programs.
These impairment charges have been reported within the “Research and development” line item within
the Expenses section of the Company’s Consolidated Statement of Operations for the years ended
December 31, 2007 and 2006.

The Company will continue to review its estimate of remaining useful lives related to assets currently
being used on the Company’s remaining programs. Any future changes to the estimated useful lives of
the Company’s assets could have a material impact on its financial statements.

In September 2004, the Company extended its lease for the 45 Moulton Street facility until December
2010. The lease previously ended in April 2007. As a result, the Company extended the depreciable
lives of its leasehold improvements at the 45 Moulton Street facility to the lesser of their useful lives or
the remaining lease term.

(7) ACCRUED LIABILITIES

Accrued liabilities consist of the following:

Accrued compensation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Professional fees . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Facility-related costs . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Other . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

$ 708,000
73,000
192,000
178,000

$ 578,000
200,000
484,000
267,000

Total

. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

$1,151,000

$1,529,000

December 31,

2007

2006

(8) DEBT OBLIGATIONS

Short- and long-term debt, including accrued interest, consists of the following at December 31, 2007
and 2006:

December 31,

2007

2006

Notes payable to financing agencies for capital purchases . . . . .
Less—current portion . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

$ 404,000
(404,000)

$ 1,980,000
(1,246,000)

Total long-term debt obligations . . . . . . . . . . . . . . . . . . . . . . . . .

$

— $

734,000

Boston Private Bank & Trust Company. On March 23, 2005, the Company converted $2,250,000
borrowed under an amended loan agreement with the Boston Private Bank & Trust Company into a
36-month term note that bears interest at a fixed rate of 7.36% for the repayment period. Under the
terms of the note payable, the Company is required to make equal monthly payments of $62,500 plus
any accrued interest beginning on May 1, 2005, and extending through the 36-month term.

On December 9, 2005, the Company converted $1,450,000 borrowed under a separate loan agreement
with the Boston Private Bank & Trust Company into a 36-month term note that bears interest at a fixed
rate of 7.95% for the repayment period. Under the terms of the note payable, the Company is required
to make equal monthly payments of $40,278 plus any accrued interest beginning on January 1, 2006,

94

CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

and extending through the 36-month term. However, the Company sold certain of its assets during
2007 and pepaid $332,000 of the principal obligation under this note. Because of these prepayments,
the Company expects to fully pay this term note in April 2008.

As of December 31, 2007, the net book value of assets collateralized under this note was $421,000, and
the Company owed $151,000, including $1,000 in interest, under this note.

During the year ended December 31, 2007, the Company sold certain of its assets with a net book value
of $229,000 after effect of impairment. Gross proceeds from the sale of these assets, as well as various
lab supplies that had no book value, were $332,000 and were directly remitted to Boston Private
Bank & Trust and applied to the principal obligation outstanding under this loan agreement. None of
the terms of the loan were changed as a result of the sale of assets collateralized under this agreement.
The Company also recorded expenses of $5,000 related to these sales resulting in a net gain on sale of
assets of $88,000, which was reflected as a reduction of “Research and development expenses” in the
Company’s Consolidated Statement of Operations for the year ended December 31, 2007. Any future
proceeds from the sale of collateralized assets will be applied to the Company’s outstanding principal
obligations under its loan agreements with the Boston Private Bank & Trust Company.

As of December 31, 2007, the Company is in compliance with the sole covenant under each of the
agreements with the Boston Private Bank & Trust Company. The covenant requires the Company to
maintain a minimum working capital ratio. Should the Company fail to pay amounts when due or fail
to maintain compliance with the covenant under the agreements,
the entire obligation becomes
immediately due at the option of the Boston Private Bank & Trust Company.

Becton Dickinson. On June 26, 2001, the Company received $2,000,000 from Becton Dickinson under
a convertible subordinated note payable in connection with the exercise of an option to negotiate a
collaboration agreement. The note payable was repayable at the option of the Company in either cash
or issuance of the Company’s common stock, also at the option of the Company, at any time up to its
maturity date of June 26, 2006. On January 20, 2006, the Company elected to prepay the then-
outstanding principal and interest due under the note in the amount of $2,639,000 by issuing to Becton
Dickinson 669,656 shares of the Company’s common stock, based on a 10-day trailing average of the
Company’s closing stock prices resulting in a conversion price of $3.94 per share. The Company has
no further obligations under this convertible note payable.

Maturities of short-term debt are as follows:

Year Ending December 31,

2008 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Thereafter . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

$408,000
—

Total minimum payments . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

Less—Amount representing interest

408,000
(4,000)

Principal obligation, including accrued interest, as of December 31,

2007 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

$404,000

95

CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

(9) COMMITMENTS

(a) OPERATING LEASES

The Company has noncancellable operating lease agreements for office and laboratory space. The
Company’s remaining operating lease commitments for all leased facilities with an initial or remaining
term of at least one year are as follows:

Year Ending December 31,

2008 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
2009 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
2010 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Thereafter

$ 948,000
948,000
948,000
—

Total minimum payments . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

$2,844,000

Rent expense for all operating leases was $541,000, $863,000 and $871,000 for the years ended
December 31, 2007, 2006 and 2005, respectively, net of settlement proceeds received during 2007 and
facility sublease income of $262,000, $185,000 and $412,000 in 2007, 2006 and 2005, respectively.

(b) LICENSE AGREEMENTS

The Company licenses a significant portion of its technology from several universities and foundations.
In exchange for the right to use licensed technology in its research and development efforts, the
Company has entered into various license agreements. These agreements generally stipulate that the
Company pays an annual license fee and is obligated to pay royalties on future revenues, if any,
resulting from use of the underlying licensed technology. Such revenues may include, for example,
up-front license fees, development milestones and royalties. In addition, some of the agreements
commit the Company to make contractually defined payments upon the attainment of scientific or
clinical milestones. The Company expenses license fee payments as incurred and expects to expense
royalty payments as related future product sales, if any, are recorded. The Company accrues expenses
for scientific and clinical milestones over the period that the work required to meet the milestone is
completed, provided that the Company believes that the achievement of the milestone is probable. The
Company incurred license fee expenses of $199,000, $295,000 and $190,000 for the years ended
December 31, 2007, 2006 and 2005, respectively.

(10) WARRANTS

The Company has warrants to purchase an aggregate of 6,399,271shares of its common stock
outstanding as of December 31, 2007. These warrants are summarized as follows:

(a)

In connection with the private placement of 13,631,022 shares of its common stock on August 8,
2007, the Company issued warrants to purchase 4,770,859 shares of its common stock at an
exercise price of $1.02 per share all of which has been accounted for as equity in accordance with
EITF 00-19, Accounting for Derivative Financial Instruments Indexed to, and Potentially Settled
in, a Company’s Own Stock.

Pursuant to the Registration Rights Agreement, as amended, the Company agreed to file a
registration statement with the SEC within 30 days after the closing of the private placement to
register the resale of the shares and the shares issuable upon exercise of the warrants. The
Company also agreed to use its best efforts to have the registration statement declared effective
within 120 days after the filing date of the registration statement, or within 150 days of the filing

96

CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

date if the SEC determines to review the registration statement. In the event the registration
statement is in default of these timelines, the Company agreed to pay each investor as liquidated
damages an amount equal to 1% of the purchase price paid by each such investor in the private
placement per 30-day period or portion thereof during which the registration default remains
uncured thereafter, subject to an aggregate limit of 10% of the aggregate purchase price paid by
each such investor in the private placement as liquidated damages. The Company filed a resale
registration statement on Form S-3 on August 24, 2007 to register for resale the shares of common
stock, and the shares of common stock underlying the warrants, held by the investors, which was
declared effective on September 10, 2007 by the SEC. Accordingly, the Company will not pay any
liquidated damages under the registration default provisions of the registration rights agreement.

The warrants are exercisable for cash until August 8, 2012. In the event that the closing price of
the Company’s common stock as listed on NASDAQ equals or exceeds $2.50 per share for thirty
consecutive days, then for a period of thirty days thereafter the Company may require the
mandatory exercise of the warrants by providing at least twenty business days’ prior written notice
to the holder; provided that the Company simultaneously requires the mandatory exercise of all
warrants then outstanding under this private placement. As of December 31, 2007, none of these
warrants have been exercised.

(b)

(c)

In connection with the registered direct offering of 5,476,559 shares of its common stock on
October 14, 2004, the Company issued warrants to purchase 547,656 shares of its common at an
exercise price of $4.59 per share. The warrants expire on October 14, 2009. As of December 31,
2007, none of these warrants have been exercised.

In connection with the private placement of 3,589,700 shares of its common stock on August 14,
2003, the Company issued warrants to purchase 1,076,910 shares of its common stock at an
exercise price of $4.45 per share. The warrants expire on August 14, 2008. As of December 31,
2007, none of these warrants have been exercised.

(d) At December 31, 2007, other warrants to purchase 3,846 shares of common stock at an exercise
price of $19.51 per share are outstanding. These warrants expire at various dates, ranging from
September 2009 until December 2009.

(11) CURIS SHANGHAI

In August 2006, the Company established a wholly-owned subsidiary in Shanghai, China called Curis
Pharmaceuticals (Shanghai) Co., Ltd., or Curis Shanghai. Upon establishment of the subsidiary, the
Company was required by the Chinese government to contribute $2,100,000 to Curis Shanghai, of
which the first contribution of $420,000 was made in November 2006. The Company converted
$140,000 of this initial contribution into local currency and this amount will therefore be affected by
investment was in a U.S. dollar-
foreign currency fluctuations. The remaining $280,000 initial
denominated bank account in China. During 2007, the Chinese government approved the Company’s
request to decrease its capital requirement to $140,000, and $280,000 of the initial investment made in
China was returned to the Company in July 2007.

As of December 31, 2007, Curis Shanghai was not operational. There were only nominal transactions
related to administrative expenses at Curis Shanghai for the years ended December 31, 2007 and 2006.
There were no intercompany transactions during the years ended December 31, 2007 and 2006. Curis
Shanghai currently has no employees and the Company does not plan to hire any subsidiary employees
for the foreseeable future. The Company currently expects that certain operational aspects, including
oversight of the third party chemistry provider, will be managed from the Company’s Cambridge,
Massachusetts’ location.

97

CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

(12) INCOME TAXES

For the years ended December 31, 2007, 2006 and 2005, the Company did not record any federal or
state tax expense given its continued net operating loss position.
The provision for income taxes for continuing operations was at rates different from the U.S. federal
statutory income tax rate for the following reasons:

Statutory federal income tax rate . . . . . . . . . . . . . . . . . . . . . . . . . . .
State income taxes, net of federal benefit
. . . . . . . . . . . . . . . . . . . .
Research and development tax credits . . . . . . . . . . . . . . . . . . . . . . .
Deferred compensation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
NOL expirations . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Other . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Net increase in valuation allowance . . . . . . . . . . . . . . . . . . . . . . . . .

For the Year Ended
December 31,

2007

2006

2005

34.0% 34.0% 34.0%
5.2% 5.0% 4.5%
7.4% 9.0% 4.1%
(6.9%)
(0.5%)
(6.5%)
(70.3%) (19.5%) (11.5%)
(0.2%)
4.9%
(0.6%)
30.8% (21.4%) (35.5%)

Effective income tax rate . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

—% —% —%

Deferred tax assets and deferred tax liabilities are recognized based on temporary differences between
the financial reporting and tax basis of assets and liabilities using future expected enacted rates. A
valuation allowance is recorded against deferred tax assets if it is more likely than not that some or all
of the deferred tax assets will not be realized.
The principle components of the Company’s deferred tax assets at December 31, 2007 and 2006,
respectively are as follows:

December 31,

2007

2006

Deferred Tax Assets:

Net operating loss carryforwards . . . . . . . . . . . . . . .
Research and development tax credit

carryforwards . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Depreciation and amortization . . . . . . . . . . . . . . . . .
Capitalized research and development

expenditures . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Deferred revenue . . . . . . . . . . . . . . . . . . . . . . . . . . .
Impairment of investments . . . . . . . . . . . . . . . . . . . .
Stock options . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Accrued expenses and other . . . . . . . . . . . . . . . . . . .

$ 71,296,000

$ 70,580,000

9,586,000
2,663,000

23,725,000
746,000
124,000
1,482,000
257,000

9,661,000
2,596,000

23,894,000
4,384,000
(77,000)
775,000
210,000

Total Gross Deferred Tax Asset . . . . . . . . . . . . . . . . . . . .
Valuation Allowance . . . . . . . . . . . . . . . . . . . . . . . . . . . .

109,879,000
(109,879,000)

112,023,000
(112,023,000)

Net Deferred Tax Asset

. . . . . . . . . . . . . . . . . . . . . . . . . .

$

— $

—

The classification of the above deferred tax assets is as follows:

December 31,

2007

2006

Deferred Tax Assets:

Current deferred tax assets . . . . . . . . . . . . . . . . . . . .
Non-current deferred tax assets . . . . . . . . . . . . . . . .
Valuation Allowance . . . . . . . . . . . . . . . . . . . . . . . .

$

996,000
108,883,000
(109,879,000)

$

218,000
111,805,000
(112,023,000)

Net Deferred Tax Asset

. . . . . . . . . . . . . . . . . . . . . . . . . .

$

— $

—

98

CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

As of December 31, 2007, the Company had federal and state net operating losses (“NOLs”) of
$200,838,000 and $48,033,000, respectively, and federal and state research and experimentation credit
carryforwards of approximately $8,029,000 and $2,349,000, respectively, which will expire at various
dates starting in 2008 through 2027. The Company had $13,414,000 of federal net operating losses
generated in 1992 and $5,022,000 of Massachusetts net operating losses generated in 2002 that expired
in 2007. As required by SFAS No. 109, the Company’s management has evaluated the positive and
negative evidence bearing upon the realizability of its deferred tax assets, and has determined that it is
not more likely than not that the Company will recognize the benefits of the deferred tax assets.
Accordingly, a valuation allowance of approximately $109,879,000 has been established at
December 31, 2007. The benefit of deductions from the exercise of stock options is included in the
NOL carryforwards. The benefit from these deductions will be recorded as a credit to additional paid-in
capital if and when realized through a reduction of cash taxes.

Utilization of the NOL and R&D credit carryforwards may be subject to a substantial annual limitation
under Section 382 of the Internal Revenue Code of 1986 due to ownership change limitations that have
occurred previously or that could occur in the future. These ownership changes may limit the amount
of NOL and R&D credit carryforwards that can be utilized annually to offset future taxable income and
tax, respectively. The Company has not completed a study to assess whether a change of control has
occurred or whether there have been multiple changes of control since the Company’s formation
because the Company continues to maintain a full valuation allowance on its NOL and R&D credit
carryforwards. In addition, there could be additional ownership changes in the future, which may result
in additional limitations in the utilization of the carryforward NOLs and credits, and the Company does
not expect to have any taxable income for the foreseeable future.

In June 2006, the FASB issued Interpretation No. 48, “Accounting for Uncertainty in Income Taxes, an
interpretation of FAS 109” (“FIN 48”). This statement clarifies the criteria that an individual tax
position must satisfy for some or all of the benefits of that position to be recognized in a company’s
financial statements. The Company adopted FIN No. 48 on January 1, 2007. The implementation of
FIN No. 48 did not have a material impact on the Company’s consolidated financial statements, results
of operations or cash flows. At the adoption date of January 1, 2007, and also at December 31, 2007,
the Company had no unrecognized tax benefits. The Company has not, as yet, conducted a study of its
research and development credit carryforwards. This study may result
to the
Company’s research and development credit carryforwards, however, until a study is completed and
any adjustment is known, no amounts are being presented as an uncertain tax position under FIN 48. A
full valuation allowance has been provided against the Company’s research and development credits
and, if an adjustment is required, this adjustment would be offset by an adjustment to the valuation
allowance. Thus, there would be no impact to the consolidated balance sheet or statement of operations
if an adjustment were required.

in an adjustment

The tax years 1993 through 2006 remain open to examination by major taxing jurisdictions to which
the Company is subject, which are primarily in the United States (“U.S.”), as carryforward attributes
generated in years past may still be adjusted upon examination by the Internal Revenue Service (“IRS”)
or state tax authorities if they have or will be used in a future period. The Company is currently not
under examination by the Internal Revenue Service or any other jurisdictions for any tax years. The
Company recognizes both accrued interest and penalties related to unrecognized benefits in income tax
expense. The Company has not recorded any interest and penalties on any unrecognized tax benefits
since its inception.

99

CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

(13) RETIREMENT SAVINGS PLAN

The Company has a 401(k) retirement savings plan covering substantially all of the Company’s
employees. Matching Company contributions are at the discretion of the Board of Directors. For the
years ended December 31, 2007, 2006 and 2005,
the Board of Directors authorized matching
contributions of $129,000, $139,000 and $114,000, respectively.

(14) RELATED PARTY TRANSACTIONS

The Company and Stephen K. Carter, a member of the Company’s Board of Directors, entered into a
consulting agreement effective May 11, 2007. This agreement will expire one year from the effective
date. Either party may terminate the agreement upon 30 days’ written notice to the other party. In
consideration for the services rendered by Dr. Carter to the Company, the Company agreed to pay
Dr. Carter compensation in the amount of $2,000 per day for each day of consulting work, or $250 per
hour for portions thereof, not to exceed $20,000 during the one-year term. The Company made
payments to Dr. Carter under this consulting agreement prior to his appointment to the Board in
December 2007. These payments totaled $3,000 for the year ended December 31, 2007. The consulting
agreement was still effective as of December 31, 2007.

The Company and Joseph M. Davie, Ph.D., M.D., a member of the Company’s Board of Directors,
entered into a consulting agreement, which was approved by the Board of Directors on August 23,
2006 with an effective date of June 19, 2006, the date on which Dr. Davie commenced the performance
of consulting services for the Company as the Interim Chief Scientific Officer, as amended on
October 30, 2006. This agreement expired on June 19, 2007 in accordance with its terms. In
consideration for the services rendered by Dr. Davie to the Company, the Company agreed to pay
Dr. Davie compensation in the amount of $4,000 per day for each day of consulting work, or $500 per
hour for portions thereof. For the years ended December 31, 2007 and 2006, the Company had incurred
$8,000 and $53,000, respectively, in related consulting expenses in its Consolidated Statement of
Operations.

On September 14, 2006, the Company and Dr. Davie entered into a Scientific Advisory and Consulting
Agreement pursuant to which Dr. Davie agreed to serve as Chairman of the Company’s Scientific
Advisory Board. The term of this agreement is for a period of five years. Either party may terminate
this agreement by providing thirty days’ written notice to the other party. In consideration for the
services rendered by Dr. Davie to the Company, the Company agreed to pay Dr. Davie an annual
retainer of $25,000. Such retainer became effective upon the expiration of the consulting agreement for
services as interim Chief Scientific Officer on June 19, 2007. For the year ended December 31, 2007,
the Company incurred $13,000 in Scientific Advisory Board services provided by Dr. Davie. Of this
amount, $6,000 was included in “Accounts payable” in the Company’s Consolidated Balance Sheet as
of December 31, 2007. For the year ended December 31, 2006, the Company did not incur costs for
Dr. Davie in his role as Chairman of the Scientific Advisory Board because this retainer did not
become effective until June 19, 2007.

In connection with the Scientific Advisory Board agreement, the Board also granted to Dr. Davie an
option, pursuant to the 2000 Plan, to purchase 35,000 shares of common stock of the Company at an
exercise price equal to $1.72, which was the closing price of the common stock of the Company on the
NASDAQ Global Market on September 14, 2006, the date of grant. These options will vest quarterly
over a four-year period.

During the years ended December 31, 2006 and 2005, the Company made consulting payments to
Douglas A. Melton, Ph.D., who was then a member of the Company’s Board of Directors, for service

100

CURIS, INC. AND SUBSIDIARIES

Notes to Consolidated Financial Statements—Continued

as chairman on its Scientific Advisory Board. This agreement expired on July 31, 2006 and Dr. Melton
is no longer serving on the Company’s Scientific Advisory Board. These payments were in addition to
compensation earned in his capacity as a director. On June 7, 2007, Dr. Melton’s directorship with the
Company expired. These consulting payments totaled $44,000 and $75,000, respectively, for the years
ended December 31, 2006 and 2005.

(15) SELECTED QUARTERLY FINANCIAL DATA (UNAUDITED)

The following are selected quarterly financial data for the years ended December 31, 2007 and 2006:

Net revenues . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Income (loss) from operations . . . . . . . . . . . . . . . . . .
Net income (loss) applicable to common

stockholders . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Basic net income (loss) per share . . . . . . . . . . . . . . . .
Diluted net income (loss) per share . . . . . . . . . . . . . . .
Shares used in computing basic net income (loss) per
share . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

Shares used in computing diluted net income (loss)

Quarter Ended

March 31,
2007

June 30,
2007

September 30,
2007

December 31,
2007

$ 2,362,786
(3,884,414)

$ 1,228,724
(4,177,286)

$ 1,312,202
(4,122,660)

$11,484,842
3,809,799

(3,540,773)

(3,997,544)

(3,718,300)

$
$

(0.07) $
(0.07) $

(0.08) $
(0.08) $

(0.06) $
(0.06) $

4,292,374
0.07
0.07

49,354,125

49,408,100

57,534,767

63,180,451

per share . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

49,354,125

49,408,100

57,534,767

63,206,837

Net revenues . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Income (loss) from operations . . . . . . . . . . . . . . . . . .
Net income (loss) applicable to common

stockholders . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Basic net income (loss) per share . . . . . . . . . . . . . . . .
Diluted net income (loss) per share . . . . . . . . . . . . . . .
Shares used in computing basic net income (loss) per
share . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

Shares used in computing diluted net income (loss)

March 31,
2006

June 30,
2006

September 30,
2006

December 31,
2006

$ 2,038,430
(4,350,719)

$ 2,558,885
(4,251,875)

$ 4,270,439
(1,701,398)

$ 6,067,883
249,049

(4,048,994)

(3,924,195)

(1,536,627)

$
$

(0.08) $
(0.08) $

(0.08) $
(0.08) $

(0.03) $
(0.03) $

680,494
0.01
0.01

48,854,964

49,032,837

49,146,609

49,240,712

per share . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

48,854,964

49,032,837

49,146,609

49,422,874

The net loss amounts presented above for the quarter ending December 31, 2007 include $10,509,000
of revenue recognized under the Genentech June 2003 collaboration, which includes $3,000,000 for a
contingent cash payment that the Company received in October 2007 (see Note 3(a)).

The net loss amounts presented above for the quarter ending December 31, 2006 include $3,000,000 of
substantive milestone revenue recognized under the Genentech June 2003 collaboration.

101

ITEM 9. CHANGES IN AND DISAGREEMENTS WITH ACCOUNTANTS ON ACCOUNTING AND

FINANCIAL DISCLOSURE

None.

ITEM 9A. CONTROLS AND PROCEDURES

Evaluation of Disclosure Controls & Procedures

Our management, with the participation of our chief executive officer and chief financial officer, evaluated
the effectiveness of our disclosure controls and procedures as of December 31, 2007. The term “disclosure
controls and procedures,” as defined in Rules 13a-15(e) and 15d-15(e) under the Exchange Act, means controls
and other procedures of a company that are designed to ensure that information required to be disclosed by us in
the reports that we file or submit under the Exchange Act is recorded, processed, summarized and reported within
the time periods specified in the SEC’s rules and forms. Disclosure controls and procedures include, without
limitation, controls and procedures designed to ensure that information required to be disclosed by a company in
the reports that it files or submits under the Exchange Act is accumulated and communicated to the company’s
management, including its principal executive and principal financial officers, as appropriate to allow timely
decisions regarding required disclosure. Management recognizes that any controls and procedures, no matter how
well designed and operated, can provide only reasonable assurance of achieving their objectives and management
necessarily applies its judgment in evaluating the cost-benefit relationship of possible controls and procedures.
Based on the evaluation of our disclosure controls and procedures as of December 31, 2007, our chief executive
officer and chief financial officer concluded that, as of such date, our disclosure controls and procedures were
effective at the reasonable assurance level.

Management’s report on internal control over financial reporting, as defined in Rules 13a-15(f) and
15d-15(f) under the Exchange Act, is included in Item 8 of this annual report on Form 10-K and is incorporated
herein by reference.

Changes in Internal Control Over Financial Reporting

No changes in our internal control over financial reporting occurred during the fiscal quarter ended
December 31, 2007 that have materially affected, or are reasonably likely to materially affect, our internal
control over financial reporting.

ITEM 9B. OTHER INFORMATION

None.

102

PART III

ITEM 10. DIRECTORS, EXECUTIVE OFFICERS AND CORPORATE GOVERANCE

Information concerning directors that is required by this Item 10 is set forth in our proxy statement for our
2008 annual meeting of stockholders under the headings “Directors and Nominees for Director,” “Board
Committees” and “Section 16(a) Beneficial Ownership Reporting Compliance,” which information is
incorporated herein by reference. The name, age, and position of each of our executive officers is set forth under
the heading “Executive Officers of the Registrant” in Part I of this Annual Report on Form 10-K, which
information is incorporated herein by reference.

ITEM 11. EXECUTIVE COMPENSATION

Information required by this Item 11 is set forth in our proxy statement for our 2008 annual meeting of
stockholders under the headings “Compensation of Executive Officers,” “Director Compensation,” “Report of
the Compensation Committee on Executive Compensation” and “Comparative Stock Performance” which
information is incorporated herein by reference.

ITEM 12. SECURITY OWNERSHIP OF CERTAIN BENEFICIAL OWNERS AND MANAGEMENT

AND RELATED STOCKHOLDER MATTERS

Information required by this Item 12 is set forth in our proxy statement for our 2008 annual meeting of
stockholders under the headings “Compensation of Executive Officers” and “Security Ownership of Certain
Beneficial Owners and Management,” which information is incorporated herein by reference.

ITEM 13. CERTAIN RELATIONSHIPS AND RELATED TRANSACTIONS, AND DIRECTOR

INDEPENDENCE

Information required by this Item 13 is set forth in our proxy statement for our 2008 annual meeting of
stockholders under the headings “Director Compensation” and “Compensation of Executive Officers,” which
information is incorporated herein by reference.

ITEM 14. PRINCIPAL ACCOUNTANT FEES AND SERVICES

Information required by this Item 14 is set forth in our proxy statement for our 2008 annual meeting of
stockholders under the heading “Independent Auditor’s Fees,” which information is incorporated herein by
reference.

103

ITEM 15. EXHIBITS AND FINANCIAL STATEMENT SCHEDULES

(a)(1) Financial Statements.

PART IV

Page
number
in this
report

Curis, Inc. and Subsidiaries

Report of Independent Registered Public Accounting Firm . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

Consolidated Balance Sheets as of December 31, 2007 and 2006 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

Consolidated Statements of Operations and Comprehensive Loss for the Years Ended December 31,

2007, 2006 and 2005 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

Consolidated Statements of Stockholders’ Equity for the Years Ended December 31, 2007, 2006 and

2005 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

Consolidated Statements of Cash Flows for the Years Ended December 31, 2007, 2006 and 2005 . . . . . .

Notes to Consolidated Financial Statements . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

60

61

62

63

64

65

(a)(2) Financial Statement Schedules.

All schedules are omitted because they are not applicable or the required information is shown in the

Financial Statement or Notes thereto.

(a)(3) List of Exhibits. The list of Exhibits filed as a part of this annual report on Form 10-K is set forth on

the Exhibit Index immediately preceding such Exhibits, and is incorporated herein by reference.

104

Pursuant to the requirements of Section 13 or 15(d) of the Securities Exchange Act of 1934, the registrant

has duly caused this report to be signed on its behalf by the undersigned, thereunto duly authorized.

SIGNATURES

CURIS, INC.

By:

/s/ DANIEL R. PASSERI
Daniel R. Passeri
President and Chief Executive Officer

Date: March 14, 2008

Pursuant to the requirements of the Securities Exchange Act of 1934, this report has been signed below by

the following persons on behalf of the registrant and in the capacities and on the dates indicated.

Signature

Title

Date

/s/ DANIEL R. PASSERI
Daniel R. Passeri

/s/ MICHAEL P. GRAY
Michael P. Gray

/s/ JAMES R. MCNAB, JR.
James R. McNab, Jr.

/s/ SUSAN B. BAYH
Susan B. Bayh

/s/ STEPHEN K. CARTER
Stephen K. Carter

/s/ JOSEPH M. DAVIE
Joseph M. Davie

/s/ MARTYN D. GREENACRE
Martyn D. Greenacre

/s/ KENNETH I. KAITIN
Kenneth I. Kaitin

/s/ JAMES R. TOBIN
James R. Tobin

President, Chief Executive Officer and

March 14, 2008

Director (Principal Executive
Officer)

Chief Operating Officer and Chief

March 14, 2008

Financial Officer (Principal Financial
and Accounting Officer)

Chairman of the Board of Directors

March 14, 2008

March 14, 2008

March 14, 2008

March 14, 2008

March14, 2008

March 14, 2008

March 14, 2008

Director

Director

Director

Director

Director

Director

105

EXHIBIT INDEX

Exhibit
No.

Description

Articles of Incorporation and By-laws

Incorporated by Reference

Form

SEC Filing
Date

Exhibit
Number

Filed with
this 10-K

3.1 Restated Certificate of Incorporation of Curis,

S-4/A (333-32446)

06/19/00

3.3

Inc.

3.2 Certificate of Designations of Curis, Inc.

S-3 (333-50906)

08/10/01

3.3 Amended and Restated By-laws of Curis, Inc.

S-1 (333-50906)

11/29/00

3.4 Amendment to Amended and Restated By-laws

8-K

09/24/07

3.2

3.2

3.1

of Curis, Inc.

Instruments defining the rights of security holders, including
indentures

4.1 Form of Curis Common Stock Certificate

10-K

03/01/04

4.1

Material contracts—Management Contracts and Compensatory
Plans

#10.1 Employment

Agreement,

of
September 18, 2007, between Curis and Daniel
R. Passeri

dated

as

#10.2 Amendment to Employment Agreement, dated as
of October 31, 2006,
employment
agreement dated September 20, 2001, by and
between Curis and Daniel R. Passeri

to the

8-K

09/24/07

10.1

8-K

11/02/06

10.2

#10.3 Offer Letter, dated as December 10, 2003,

10-K

03/01/04

10.4

between Curis and Michael P. Gray

#10.4 Amendment

to Offer Letter, dated as of
October 31, 2006,
letter dated
December 10, 2003, by and between Curis and
Michael P. Gray

to the offer

#10.5 Offer Letter, dated May 2, 2001, by and between

Curis and Changgeng Qian.

#10.6 Amendment to Offer Letter, dated as of May 10,
2002, to the offer letter dated May 2, 2001, by
and between Curis and Changgeng Qian

#10.7 Amendment

to Offer Letter, dated as of
December 14, 2006,
to the offer letter dated
May 2, 2001, as amended on May 10, 2002, by
and between Curis and Changgeng Qian

8-K

11/02/06

10.3

X

X

X

#10.8 Offer Letter, dated January 11, 2001, by and

10-K

03/02/07

10.6

between Curis and Mark W. Noel

#10.9 Amendment

to Offer Letter, dated as of
letter dated
October 31, 2006,
January 11, 2001, by and between Curis and
Mark W. Noel

to the offer

E-1

8-K

11/02/06

10.4

Exhibit
No.

Description

#10.10 Offer Letter, dated as of July 25, 2002, between

Curis and Mary Elizabeth Potthoff

#10.11 Amendment

to Offer Letter, dated as of
October 31, 2006,
letter dated
July 25, 2002, by and between Curis and Mary
Elizabeth Potthoff

to the offer

#10.12 Agreement and General Release, dated as of
June 25, 2007, by and between Curis and Mary
Elizabeth Potthoff

#10.13 Consulting Agreement dated June 19, 2006 by
and between Curis and Joseph M. Davie, Ph. D.,
M.D.

#10.14 First Amendment

to Consulting Agreement,
dated as of October 30, 2006, between Curis and
Joseph M. Davie, Ph.D., M.D.

#10.15 Scientific

Advisory

dated
September 14, 2006 by and between Curis and
Joseph M. Davie, Ph. D., M.D.

Agreement

#10.16 Agreement

for Service as Chairman of

the
Board of Directors, between Curis, Inc. and
James McNab, dated as of June 1, 2005

#10.17 Form of Indemnification Agreement, between
Curis, Inc. and each member of the Board of
Directors named on Schedule I thereto

#10.18

Indemnification Agreement between Curis, Inc.
and Dr. Stephen Carter, dated January 29, 2008

#10.19 Consulting Agreement dated May 11, 2007 by

and between Curis and Dr. Stephen Carter.

Incorporated by Reference

SEC Filing
Date

Exhibit
Number

Filed with
this 10-K

03/01/04

10.5

Form

10-K

8-K

11/02/06

10.5

10-Q

07/31/07

10.1

8-K

08/29/06

10.1

8-K

11/02/06

10.1

8-K

09/19/06

10.2

8-K

06/07/05

10.1

10-Q

08/09/05

10.5

8-K

1/31/08

10.1

X

#10.20 Curis 2000 Stock Incentive Plan

S-4/A (333-32446)

05/31/00

10.71

#10.21 Curis 2000 Director Stock Option Plan

S-4/A (333-32446)

05/31/00

10.72

#10.22 Curis 2000 Employee Stock Purchase Plan

S-4/A (333-32446)

05/31/00

10.73

#10.23 Form of

Incentive Stock Option Agreement
granted to directors and named executive
officers under Curis’ 2000 Stock Incentive Plan

#10.24 Form of Non-statutory Stock Option Agreement
granted to directors and named executive
officers under Curis’ 2000 Stock Incentive Plan

#10.25 Form of Non-statutory Stock Option Agreement
granted to non-employee directors under Curis’
2000 Director Stock Option Plan

10-Q

10/26/04

10.2

10-Q

10/26/04

10.3

10-Q

10/26/04

10.4

E-2

Exhibit
No.

Description

Material contracts—Leases

10.26 Lease, dated November 16, 1995, as amended,
between
Realty
Corporation and the trustees of Moulton Realty Trust
relating to the premises at 33 and 45 Moulton Street,
Cambridge, Massachusetts

Inc., Moulton

Ontogeny,

Incorporated by Reference

Form

SEC Filing
Date

Exhibit
Number

Filed with
this 10-K

S-4 (333-32446)

03/14/00

10.42

10.27 Lease, dated March 15, 2001, between Curis and
Moulton Realty Company relating to the premises at
61 Moulton Street, Cambridge, Massachusetts

10.28 Amendment

to Lease, dated August 9, 2002,
between Curis and FPRP Moulton LLC relating to
the premises at 25, 27, 33, 45 and 61 Moulton Street,
Cambridge, Massachusetts

10.29

Second Amendment
to Leases, dated August 17,
2004, between Curis and FPRP Moulton LLC
relating to the premises at 25, 27, 33, 45 and
61 Moulton Street, Cambridge, Massachusetts

Material contracts—Financing Agreements

10.30 Line of Credit Agreement for the Acquisition of
Equipment and Leasehold Improvements, restated on
September 23, 2004, between Curis and Boston
Private Bank & Trust Company

10.31

10.32

Security Agreement, dated restated on September 23,
2004, between Curis and Boston Private Bank &
Trust Company

Secured Non-Revolving Time Note, dated restated
on September 23, 2004, made by Curis in favor of
Boston Private Bank & Trust Company

10.33 Line of Credit Agreement for the Acquisition of
Equipment and Leasehold Improvements, between
Curis,
Inc. and Boston Private Bank & Trust
Company, dated as of June 9, 2005

10.34

10.35

Secured Non-Revolving Time Note, issued by Curis,
Inc. to Boston Private Bank & Trust Company, dated
June 9, 2005

Security Agreement (Equipment), between Curis,
Inc. and Boston Private Bank & Trust Company,
dated June 9, 2005

10-K

03/30/01

10.3

10-Q

11/12/02

10.1

10-Q

10/26/04

10.1

10-K

03/15/05

10.18

10-K

03/15/05

10.19

10-K

03/15/05

10.20

8-K

06/15/05

10.1

8-K

06/15/05

10.2

8-K

06/15/05

10.3

E-3

Incorporated by Reference

Form

SEC Filing
Date

Exhibit
Number

Filed with
this 10-K

10-K

03/30/99

10.10

10-Q

11/12/02

10.5

10-K

03/13/00

10.7

10-K

03/13/00

10.8

10-Q

11/06/96

10.1

S-4/A (333-32446)

06/02/00

10.43

S-4/A (333-32446)

04/03/00

10.45

10-K

03/01/04

10.23

10-K

03/01/04

10.24

10-K

03/01/04

10.25

8-K

12/09/02

10.1

8-K

07/10/03

10.1

Exhibit
No.

Description

Material contracts—License and Collaboration
Agreements

†10.36 Master Restructuring Agreement, dated as of
October 15, 1998, between Creative and Stryker
Corporation

10.37 Second Amendment

to Master Restructuring
Agreement, dated October 1, 2002, between Curis
and Stryker Corporation

10.38

Irrevocable License Agreement, dated November
20,
and Stryker
between Creative
1998,
Corporation

10.39 Stryker

Irrevocable License Agreement, dated
November 20, 1998, between Creative and
Stryker Corporation

†10.40 Cross-License Agreement, dated as of July 15,
1996, by and among Creative, Genetics Institute,
Inc. and Stryker Corporation

†10.41 License Agreement, dated as of February 12,
1996, between Curis and Leland Stanford Junior
University

†10.42 License Agreement, dated as of January 1, 1995
as amended on July 19, 1995 and August 30,
1996, between Ontogeny and The Trustees of
Columbia University in the City of New York

†10.43 Amended and Restated License Agreement, dated
June 1, 2003, between Curis, The Johns Hopkins
University and University of Washington School
of Medicine

†10.44 Amended and Restated License Agreement
(2000), dated June 10, 2003, between Curis and
the President and Fellows of Harvard University

†10.45 Amended and Restated License Agreement
(1995), dated June 10, 2003, between Curis and
the President and Fellows of Harvard University

†10.46 Agreement, dated as of November 27, 2002, by
and between Curis and Ortho Biotech Products,
L.P.

†10.47 Collaborative Research, Development

and
License Agreement, dated June 11, 2003, between
Curis and Genentech, Inc.

E-4

Exhibit
No.

Description

10.48 First Amendment to Collaborative Research, Development and
License Agreement, effective December 10, 2004, between
Curis and Genentech, Inc.

10.49 Second Amendment to Collaborative Research, Development
and License Agreement between Curis and Genentech effective
as of April 11, 2005

Incorporated by Reference

Form

SEC Filing
Date

Exhibit
Number

Filed with
this 10-K

10-K 03/15/05

10.33

8-K 04/19/05

99.1

†10.50 Drug Discovery and Collaboration Agreement dated April 1,
2005 by and between Curis, Inc. and Genentech, Inc.

10-Q 4/29/05

10.1

†10.51 Collaboration, Research and License Agreement, dated January

10-K 03/01/04

10.29

12, 2004, between Curis and Wyeth

†10.52 Collaboration, Research

dated
September 18, 2005 by and between Curis, Inc. and Procter &
Gamble Company

and License Agreement

Material contracts—Miscellaneous

10.53 Termination Agreement

and Amendments

Finance
Documents, dated May 16, 2003, between Elan Corporation,
PLC, Neuralab Limited, Elan International Services, LTD, Elan
Pharma International Limited, Curis, Inc. and Curis Newco,
LTD

to

10-Q 11/14/05

10.1

8-K 06/03/03

10.1

10.54 Registration Rights Agreement, dated June 13, 2003, between

8-K 07/10/03

10.3

Curis and Genentech, Inc.

10.55 Common Stock Purchase Agreement, dated June 11, 2003,

8-K 07/10/03

10.2

between Curis and Genentech, Inc.

10.56 Common Stock Purchase and Registration Rights Agreement,

10-K 03/01/04

10.34

dated January 9, 2004, between Curis and Wyeth

10.57 Form of Common Stock and Warrant Purchase Agreement,
dated August 11, 2003, entered into by Curis and certain
investors, together with a schedule of such investors and the
material details of each such agreement

10.58 Form of Stock Purchase Agreement, dated as of October 12,
2004, entered into by Curis and each of the purchasers, together
with a schedule of purchasers who are parties thereto

10.59 Common Stock Purchase Agreement, dated as of August 6,
2007, by and among the Company and the Purchasers (as
defined therein), as amended by Amendment to Common Stock
Purchase Agreement and Waiver, dated August 7, 2007

10.60 Common Stock Purchase Agreement, dated as of August 7,
2007, by and among the Company and the Purchasers (as
defined therein)

10.61 Registration Rights Agreement, dated as of August 6, 2007, by
and among the Company and the Purchasers (as defined
therein), as amended by Amendment to Registration Rights
Agreement, dated August 7, 2007

10-Q 11/12/03

10.1

8-K 10/14/04

10.1

8-K 08/09/07

10.1

8-K 08/09/07

10.2

8-K 08/09/07

10.3

E-5

Exhibit
No.

Description

10.62 Form of Warrant, dated August 8, 2007, issued
pursuant
to the Common Stock Purchase
Agreement, dated as of August 6, 2007, as
amended on August 7, 2007

10.63 Form of Warrant, dated August 8, 2007, issued
to the Common Stock Purchase

pursuant
Agreement, dated as of August 7, 2007

Code of Conduct

Incorporated by Reference

SEC Filing
Date

Exhibit
Number

Filed with
this 10-K

08/09/07

10.4

Form

8-K

8-K

08/09/07

10.5

14

Code of Business Conduct and Ethics

10-K

03/01/04

14

21

23.1

31.1

31.2

32.1

32.2

Additional Exhibits

Subsidiaries of Curis

Consent of PricewaterhouseCoopers LLP

Certification of the Chief Executive Officer
to Rule 13a-14(a) of the Exchange
pursuant
Act/15d-14(a) of the Exchange Act

Certification of
pursuant
Act/15d-14(a) of the Exchange Act

the Chief Financial Officer
to Rule 13a-14(a) of the Exchange

Certification of the Chief Executive Officer
pursuant
to Rule 13a-14(b)/15d-14(b) of the
Exchange Act and 18 U.S.C. Section 1350

Certification of
pursuant
Exchange Act and 18 U.S.C. Section 1350

the Chief Financial Officer
to Rule 13a-14(b)/15d-14(b) of the

X

X

X

X

X

X

#
†

Indicates management contract or compensatory plan or arrangement.
Confidential treatment has been requested as to certain portions, which portions have been separately filed
with the Securities and Exchange Commission.

E-6

Curis is a drug development company that 
is committed to leveraging its innovative 
signaling pathway drug technologies to seek 
to create new medicines, primarily for cancer. 
In expanding its drug development efforts in 
the fi eld of cancer through its targeted cancer 
drug development platform, Curis is building 
upon its previous experiences in targeting 
signaling pathways for the development of 
next generation targeted cancer therapies.

share holde r information

Curis, Inc. and Subsidiaries

off ice r s

Daniel R. Passeri

President and Chief Executive Offi cer

Michael P. Gray

Chief Operating Offi cer, Chief 
Financial Offi cer, Treasurer and Secretary

Changgeng Qian, Ph.D., M.D.

Vice President, Discovery 
and Preclinical Development

Mark W. Noel

Vice President, Technology Management 
and Business Development

market information

Our common stock has traded on
the nasdaq Global Market since
August 1, 2000. Our trading symbol is
“cris.” There were 302 shareholders
of record as of March 12, 2008. The
following table sets forth, for the fi scal
periods indicated, the high and low
sales prices per share of our common
stock as reported on the nasdaq
Global Market:

fy 20 07 
1st Quarter 
2nd Quarter 
3rd Quarter 
4th Quarter 

fy 20 06 
1st Quarter 
2nd Quarter 
3rd Quarter 
4th Quarter 

  high 
$  1.72 
$  2.35 
$  1.31 
$  1.20 

  low

$   1.15
$  1.21
$  0.93
$  0.86 

  high 

  low

$  4.10 
$  2.43 
$  1.98 
$  1.95 

$  2.28
$  1.21
$  0.91
$  1.11

We have never declared or paid any
cash dividends on our common stock
and we do not anticipate paying cash
dividends in the foreseeable future.

corporate headquarte r s

Curis, Inc.
45 Moulton Street
Cambridge, ma 02138
p 617.503.650 0

f 617.503.6501

transfe r age nt
BNY Mellon Shareowner Services
P.O. Box 358015
Pittsburgh, pa 15252-8015
p 877.810.2248
www.bnymellon.com/shareowner/isd 

board of director s

Susan B. Bayh

Director, Dyax Corporation, 
Dendreon Corporation, Emmis 
Communications, Inc., 
Nastech Pharmaceutical 
Company, and Wellpoint, Inc. 

Joseph M. Davie, Ph.D., M.D.

Director, CV Therapeutics Corporation 
and Targeted Genetics, Inc. 

Martyn D. Greenacre

Chairman of the Board, 
BMP Sunstone and Life Mist, l.l.c.; 
Director, Cephalon, Inc., Acusphere, Inc.
and Orchestra Therapeutics, Inc. 

Kenneth I. Kaitin, Ph.D.

Director of the Tufts Center for the 
Study of Drug Development; Associate 
Professor of Medicine at Tufts University 
School of Medicine

James R. McNab, Jr.

Chairman and Chief Executive Offi cer,
Palmetto Pharmaceuticals, Inc., 
Director, Argolyn Biosciences, Inc.

Daniel R. Passeri

President and Chief Executive Offi cer, 
Curis, Inc.

James R. Tobin

President and Chief Executive Offi cer,
Boston Scientifi c Corporation

inde pe nde nt accountants
PricewaterhouseCoopers llp
125 High Street
Boston, ma 02110
p 617.530.5000
www.pwcglobal.com

legal counse l

Wilmer Cutler Pickering 
Hale and Dorr llp
60 State Street
Boston, ma 02109
p 617.526.6000
www.wilmerhale.com

annual me et ing

The annual meeting of shareholders
will be held at 10:00 a.m. on 
June 3, 2008, at the offi ces of 
Wilmer Cutler Pickering 
Hale and Dorr llp
60 State Street, Boston, ma 02109

sec f orm 10-k
A copy of our 2007 annual
report on Form 10-k, without exhibits,
is available without charge upon
written request to:

inve stor re lat ions

Curis, Inc.
45 Moulton Street
Cambridge, ma 02138
info@curis.com

cautionary note

This Annual Report contains forward-looking statements within the meaning of the Private Securities Litigation Reform Act of 1995, including statements about Curis’ 
fi nancial results and expected cash life, the potential effectiveness of its technologies under development and other information pertaining to its various research and 
development programs, strategies, plans and prospects. Such statements may contain the words “believes”, “expects”, “anticipates”, “plans”, “seeks”, “estimates” or similar 
expressions. These forward looking statements are not guarantees of future performance and involve risks and uncertainties that may cause Curis’ actual results to be materially 
different from those indicated by such forward-looking statements. Actual results can be affected by a number of important factors including, among other things: adverse 
results in Curis’ and its strategic collaborators’ product development programs; diffi culties or delays in obtaining or maintaining required regulatory approvals; Curis’ ability to 
obtain or maintain required patent and other proprietary intellectual property protection; changes in or Curis’ inability to execute its business strategy; the risk that Curis does 
not obtain required additional funding ; unplanned cash requirements; risks relating to Curis’ ability to enter into and maintain important strategic collaborations, including its 
ability to maintain its current collaboration agreements with Genentech and; competitive risks; and other risk factors identifi ed in Curis’ most recent Annual Report on Form 
10-k, Quarterly Report on Form 10-q and any subsequent reports fi led with the Securities and Exchange Commission. In addition, any forward-looking statements represent 
Curis’ views only as of the date of this Annual Report and should not be relied upon as representing its views as of any subsequent date. Curis disclaims any intention or 
obligation to update any of the forward-looking statements, whether as a result of new information, future events or otherwise.

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c ur i s

Annual Report 2007

45 Moulton Street
Cambridge, ma 02138

tel: 617.503.6500
fax:  617.503.6501

www.curis.com

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