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Incyte

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FY2006 Annual Report · Incyte
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Incyte Corporation 

Experimental Station 

Route 141 & Henry Clay Road, Building E336 

Wilmington, DE  19880 

www.incyte.com

THE DRIVE TO DISCOVER.   

THE EXPERIENCE TO DELIVER.

Annual Report 2006

“With six INDs fi led in the last 15 months, 

we have the potential for multiple clinical proof-of-

concept results in 2007.”

Richard Levy, M.D., Senior Vice President, Drug Development, Incyte 

Incyte’s vision is to become a leading drug discovery and development 

company  by  building  a  proprietary  product  pipeline  of  novel  small 

molecule drugs. We have an experienced team with prior success in 

bringing  important  new  drugs  to  market.    We  believe  we  have  the 

resources, experience and drive to improve the lives of patients and 

build sustainable value for our shareholders.

INCYTE PIPELINE

Preclinical

Phase I

Phase II

HIV

Diabetes

Oncology

CCR5 Antagonists
INCB9471
INCB15050

11beta-HSD1
INCB13739

Sheddase Inhibitor
INCB7839: Solid Tumors  
JAK2

Inflammation

CCR2 Antagonists
INCB8696:  MS/Lupus Nephritis
Pfizer Collaboration (as of 11/2005)
JAK2

BO ARD OF  DIRECTORS 

EXE CUTIV E MAN AGEME NT 

Richard U. De Schutter 
Chairman of the Board 
Formerly Chairman 
and Chief Executive Offi cer 
DuPont Pharmaceuticals Company 

Paul A. Friedman, M.D. 
President and Chief Executive Offi cer 
Incyte Corporation 

Barry M. Ariko 
President, Chief Executive Offi cer 
and Chairman 
Mirapoint, Inc. 

Julian C. Baker 
Managing Member 
Baker Bros. Advisors, LLC 

Paul A. Brooke 
Chairman and Chief Executive Offi cer 
Ithaka Acquisition Corp. 
Managing Member, PMSV Holdings, LLC 
Senior Advisor, Morgan Stanley 

Matthew W. Emmens 
Chief Executive Offi cer 
Shire plc 

John F. Niblack, Ph.D. 
Formerly Vice Chairman  
and President of Global Research  
and Development 
Pfi zer Inc.  

Roy A. Whitfi eld 
Formerly Chairman of the Board 
and Chief Executive Offi cer 
Incyte Corporation 

Paul A. Friedman, M.D. 
President and Chief Executive Offi cer 

David C. Hastings 
Executive Vice President 
and Chief Financial Offi cer 

John A. Keller, Ph.D. 
Executive Vice President 
and Chief Business Offi cer 

Brian W. Metcalf, Ph.D. 
Executive Vice President 
and Chief Drug Discovery Scientist 

Patricia A. Schreck 
Executive Vice President 
and General Counsel 

Paula J. Swain 
Executive Vice President, 
Human Resources 

Transfer Agent and Registrar 
Mellon Investor Services LLC 
PO Box 3315 
South Hackensack, New Jersey 07606 
or  
480 Washington Boulevard 
Jersey City, New Jersey 07310 
Phone: 800/522-6645 
TDD for Hearing Impaired: 
800/231-5469 
Foreign Shareholders: 
201/680-6610 
TDD Foreign Shareholders: 
201/680-6578 
www.mellon-investor.com/isd

Annual Meeting
The Annual Meeting of Stockholders
will be held May 22, 2007, at 10:00 a.m.,
Eastern Daylight Time, at the
Hotel du Pont, 11th and Market Streets,
Wilmington, Delaware.

Outside Counsel
Pillsbury Winthrop Shaw Pittman LLP

Independent Registered Public 
Accounting Firm
Ernst & Young LLP

Market Information
Incyte’s Common Stock is listed on
the NASDAQ Global Market under the
symbol INCY.

Investor Relations
You can obtain recent press releases
and other publicly available information
on Incyte by visiting our web site at
www.incyte.com.

Contact
Pamela Murphy
Vice President, Investor Relations and
Corporate Communications
Email: pmurphy@incyte.com

Corporate Headquarters
Incyte Corporation
Experimental Station
Route 141 & Henry Clay Road
Building E336
Wilmington, Delaware 19880
302/498-6700

Forward-looking Statements

Except  for  the  historical  statements  contained  herein,  the  statements  contained  in  this  annual  report,  including  without  limitation,  statements  as  to  the 

anticipated  advancement  and  composition  of  our  pipeline,  the  expected  timing,  progress  and  other  information  regarding  our  preclinical  and  clinical  trials, 

our development plans and goals for 2007 and 2008, plans to present and disclose data from our clinical trials, the potential benefi ts and effectiveness of our 

compounds in treating disease, and the ability of our cash position to advance our pipeline and continue our operations for a stated period of time, are forward-

looking statements within the meaning of the “safe harbor” provisions of the Private Securities Litigation Reform Act of 1995. The forward-looking statements 

are based on our current intent, belief and expectations, using information currently available to us, and are therefore subject to certain risks, uncertainties, 

and assumptions that may cause actual results to differ materially, including the results of further scientifi c research, the impact of technological advances and 

competition, unanticipated delays or uses of capital, and other risks discussed in our Annual Report on Form 10-K for the year ended December 31, 2006, which 

is contained herein, and in our fi lings with the Securities and Exchange Commission. These forward-looking statements speak only as of the date hereof.  Incyte 

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disclaims any intent or obligation to update these forward-looking statements.

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
In 2002, we set out to develop a broad pipeline 
of potential new therapeutics by:

Building a powerful discovery research team 

  120 biologists and chemists, supported by a 
  core team of clinical and regulatory professionals,
  working seamlessly to advance multiple programs.

Identifying and validating promising drug targets

  Programs focused on some of the most promising
  new mechanisms in their therapeutic area: CCR5 
  for HIV,11beta-HSD1 for diabetes, sheddase for
  oncology and JAK for infl ammation and oncology. 

Moving rapidly into lead optimization and 
preclinical development

  8 INDs fi led to date; several more expected in 2007.

Creating a diversifi ed portfolio of high-quality drug 
candidates for important medical markets 

  Working in four therapeutic areas: HIV, diabetes, 
  oncology and infl ammation. Clinical trials in 2007 
  expected to generate multiple proof-of-concept results.

Pursuing partnerships and acquisitions 
to accelerate pipeline growth

  Pfi zer collaboration in CCR2 antagonist program.

 
 
  
 
 
 
  
 
  
 
 
 
 
To Our Shareholders:

We are working intensively to build a diverse pipeline of products capable of creating signifi cant and sustainable 
value.    With  encouraging  Phase  IIa  clinical  data  for  our  HIV  and  diabetes  compounds,  and  with  excellent 
progress in new programs for infl ammatory diseases and oncology, we moved closer to this goal in 2006.

2006 Accomplishments

Important measures of our success in 2006 were the fi lings of Investigational New Drug (IND) applications 
for four novel compounds:

•  Our lead CCR5 antagonist for HIV, INCB9471, now in Phase IIa clinical trials. In the fi rst 

seven HIV patients treated, the compound was well-tolerated and achieved a mean 1.9 log 
viral load reduction by day 14 of therapy.

•  Our lead 11-beta hydroxysteroid dehydrogenase type 1 (11beta-HSD1) inhibitor, INCB13739, 

for type 2 diabetes, also in Phase IIa development. Clinical results showed that a single oral dose 

  of INCB13739 completely inhibited 11beta-HSD1 activity in both adipose tissue and liver 
  of obese insulin-resistant individuals over a 24 hour period.

•  Our follow-on CCR5 antagonist, INCB15050, for HIV.

•  Our CCR2 antagonist, INCB8696, for multiple sclerosis, one of the indications we retained in 

the CCR2 license agreement with Pfi zer established in January 2006.    

In  refractory  cancer  patients  with  solid  tumors,  we  continued  the  testing  of  our  lead  sheddase  inhibitor, 
INCB7839,  a  compound  that  interferes  with  signaling  through  all  four  of  the  epidermal  growth  factor 
receptors (HER1, HER2, HER3 and HER4). In 2006, there were an increasing number of scientifi c publications 
and presentations indicating the importance, in particular, of HER3-driven signaling in maintaining tumor cell 
growth in the presence of inhibitors of HER1 and HER2.  As INCB7839 can inhibit the production of heregulin, 
the activating ligand for HER3, these publications further support the rationale for this mechanism.   

The discovery team also successfully advanced compounds from a new program involving inhibitors of Janus-
associated kinases (JAK) into IND-enabling trials.  Several INDs have recently been fi led and we expect to begin 
a series of Phase I clinical trials in the fi rst half of this year. I believe these orally available JAK inhibitors could 
have signifi cant therapeutic potential in a number of areas including infl ammatory diseases, myeloproliferative 
disorders and certain cancers.

2007 Program Objectives 

In 2007, we expect to make signifi cant and visible pipeline progress in the following programs:  

HIV:  At a scientifi c meeting later this year, we plan to present the full viral-load reduction and safety data from 
the Phase IIa trial of our lead CCR5 antagonist, INCB9471. Once we’ve completed a series of required drug-
interaction studies, we plan to initiate Phase IIb trials. Top-line data from the Phase IIa trial reveal the potential 
for our compound to be differentiated from others in this important new class of drugs. In particular, its long 
half-life  allows  once-daily  dosing  without  boosting  with  ritonavir;  its  long  half-life  could  also  improve  the 
effi cacy and sustainability of combination treatment regimens by maintaining drug levels suffi cient to block 
viral replication even when patients occasionally miss doses.

  
 
 
 
 
 
 
Every year is important, but 2007 has the 
potential to be transforming for Incyte.

Diabetes:  For our lead 11beta-HSD1 inhibitor, INCB13739, we are currently enrolling patients in a 28-day Phase 
IIa trial in type 2 diabetics. This trial will utilize a sensitive technique to measure the ability of INCB13739 to 
improve the body’s response to insulin. Positive results would constitute proof-of-concept for this compound 
and  for  the  mechanism  itself,  and  are  expected  to  be  predictive  of  long-term  improvements  in  glycemic 
control. The next step would be a three-month trial to assess the longer-term effects of INCB13739 using the 
well established primary endpoint of improvement in hemoglobin A1c levels. 

Oncology:  Once the maximum tolerated dose of our oral sheddase inhibitor, INCB7839, has been defi ned 
in  the  ongoing  Phase  Ib/IIa  dose-escalation  trial,  we  plan  to  initiate  Phase  II  trials  in  breast  cancer  and 
possibly one other solid tumor type.  We also plan to disclose relevant biomarker data generated in the Phase 
Ib/IIa trial. 

Infl ammation:  We intend to begin the development of our lead CCR2 antagonist, INCB8696, as a treatment 
for multiple sclerosis, with a Phase I trial in healthy volunteers. 

We also expect to begin clinical trials in the JAK program this year. Therapeutic areas of interest include chronic 
infl ammation, myeloproliferative disorders and cancer. For competitive reasons, we have not disclosed specifi c 
details of our clinical plans; however, we expect to produce proof-of-concept results for at least one indication 
this year. 

Importantly, our year-end 2006 cash position of approximately $330 million is expected to carry us into 2010, 
providing a strong foundation to advance our pipeline and build value for our stakeholders.

Next Steps in Value Creation

Every year is important, but 2007 has the potential to be transforming for Incyte. We anticipate results from 
clinical proof-of-concept studies with lead compounds from four of our programs: CCR5 antagonists for HIV, 
11beta-HSD1  inhibitors  for  diabetes,  sheddase  inhibitors  for  solid  cancers,  and  JAK2  inhibitors.  With  this 
high level of clinical activity, driven by our focused and determined team, I remain very optimistic about our 
prospects for 2007 and beyond.

Sincerely,

Paul A. Friedman, M.D.
President and Chief Executive Offi cer
April 2007

CCR5 Antagonists:  
A Next Generation in HIV Therapy 

“As part of the original Sustiva team, I was able to 
see fi rsthand how a promising product candidate can 
fundamentally change the treatment of HIV. To once again 
have the opportunity with INCB9471, which looks like it 
could be best-in-class among this important new class of 
CCR5 antagonists, is very exciting.”

Sue Erickson-Viitanen, Ph.D.

Senior Director, Virology Drug Development, Incyte

Mechanism of Action

Human immunodefi ciency virus (HIV) 
enters T-cells by binding to CD4 and one 
of two obligate co-receptors: 
CCR5 or CXCR4

•  CCR5 antagonists block entry of 
  HIV that binds exclusively to CCR5

(R5 tropic virus). 

•  Over 85% of patients starting HIV
therapy have only R5 tropic virus

  detectable in blood. 
•  About 50 to 60% of highly treat- 
  ment-experienced patients still 
  have only R5 tropic virus detectable

in blood. 

Potential Benefi ts

•  Safe addition to therapy, comple- 
  mentary to drugs with other  
  modes of action.
•  Less risk of developing drug  

resistance.  

Our lead compound: INCB9471 

•  Potential to be best-in-class. 
•  Potent antiviral compound with 
  excellent pharmacokinetics.
•  Allows for once daily use without 
  boosting with ritonavir, a compound 
  associated with cardiovascular risk.
•  Potential for use in fi rst and second 

line regimens.  

•  Long half-life expected to provide 
  more effective anti-viral activity even 
if doses are occasionally missed.   

CCR5 antagonists in HIV regimens 
may provide

Clinical Status

10-Day Phase I studies in healthy 
volunteers completed

•  Substantial benefi t in patients with
  R5 tropic virus.
•  Immunologic benefi t in all subjects
  based on increasing CD4 cell counts.

•  Multiple doses up to 200 mg once
  daily for 10 days of dosing.
•  Very well-tolerated with no dose-

limiting toxicity identifi ed.

14-Day Phase IIa study ongoing

•  Includes treatment-naïve and 

treatment-experienced patients not 
currently on HIV therapy.
•  R5 tropic HIV/naïve to CCR5 
  antagonists with viral load > 
  10,000 copies/ml. 
•  Impressive and sustained antiviral 
  effect demonstrated with 200 
  mg once daily dose of INCB9471 
  as monotherapy.
•  Additional cohorts planned to 
  examine higher and lower doses.
•  Full results expected to be presented 
  at scientifi c meetings this year.

Required drug interaction studies to be 
completed in 2007

•  Single doses of INCB9471 studied 
  up to 300 mg. 

Phase IIb clinical studies expected to 
follow in late 2007 and early 2008

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
“I believe that current data show that 
the best time to use a CCR5 antagonist 
may be early on in the course of 
treatment where R5-tropic HIV virus 
dominates. Additionally, because these 
compounds work differently than 
existing HIV therapies and can be easily 
combined with other treatments, this 
new class represents the potential for 
an important advance for how we treat 
HIV patients.”

Calvin Cohen, M.D.
Research Director of the Community Research Initiative of
New England and HIV Clinical Management Consultant at
Harvard Vanguard Medical Associates 

 
 
 
11beta-HSD1 Inhibitors:
An Emerging New Class of Drugs for 
Metabolic Disease 

“While other companies are pursuing this target, Incyte 
may well be the fi rst to confi rm the clinical relevance 
of 11beta-HSD1. The fact that our chemists have built 
such a broad and diverse portfolio of proprietary oral 
HSD1 inhibitors puts us in an ideal position to generate 
signifi cant value from this program.” 

Project Leader 11beta-HSD1/Director, Applied Technology, Incyte  

Reid Huber, Ph.D.

Mechanism of Action

11beta-HSD1 is an enzyme that converts 
the biologically inactive steroid cortisone 
into the potent biologically active 
hormone cortisol, which is known to 
act as a functional antagonist of insulin 
action in multiple target tissues 

•  Liver: cortisol reduces insulin’s ability 

to suppress glucose production.

•  Muscle: cortisol reduces insulin’s ability  

to promote glucose uptake.

•  Adipose: cortisol blocks insulin’s ability  

to suppress free fatty acid release.

Several additional lines of evidence 
implicate 11beta-HSD1 activity as a 
primary driver of insulin resistance and a 
critical point for disease intervention

•  11beta-HSD1 is upregulated 3-5 fold 

in obese humans. 

•  Adipose-specifi c overexpression of
  11beta-HSD1 by 2-3 fold in transgenic  
  mice produces a phenotype closely  
resembling human type 2 diabetes. 

•  Reduction of intracellular cortisol levels
in the rodent as a result of pharma- 
cologic inhibition of 11beta-HSD1 
can reverse manifestations of the 

  metabolic syndrome including obesity, 
  diabetes, dyslipidemia and  
  atherosclerosis.  

Clinical Status

Very well-tolerated in single- and 
multiple-dose-ranging Phase I studies

Phase IIa adipose and liver pharmaco-
dynamic activity study in obese/insulin 
resistant subjects completed

Potential Benefi ts

By reducing the insulin resistance caused 
by intracellular cortisol, an 11beta-
HSD1 inhibitor may be useful as a 
treatment for type 2 diabetes and also 
in allied conditions such as dyslipidemia, 
cardiovascular disease, obesity and 
hypertension.   

Our lead compound: INCB13739

•  Potent, selective oral compound with  
  excellent pharmacokinetic profi le. 
•  Completely inhibits the production of 

intra-adipose and intra-hepatic cortisol 

  by 11beta-HSD1, while maintaining 
  normal systemic cortisol levels, which 
  are essential for immune function 
  and response to stress.

•  First compound publicly shown to 
completely inhibit 11beta-HSD1

  activity in both adipose tissue and liver; 
  a required characteristic to truly 

test the clinical value of 11beta-HSD1 
inhibition.   

Twenty-eight day study including two-
step insulin clamp in type 2 diabetics 
initiated 1Q2007

•  Sensitive and accurate measure of 
  hepatic and peripheral insulin 

sensitivity; expected to be predictive 
  of long-term improvements in insulin 

resistance and glycemic control.

Three-month effi cacy study in patients 
with Type 2 diabetes expected to follow

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
“11beta-HSD1 is a signifi cant and 
promising new therapeutic target for 
the metabolic syndrome. Current 
therapies, particularly for diabetes, 
fail to prevent disease progression 
long term, demonstrating a clear need 
for more effective, broad spectrum 
approaches to treatment. By inhibiting 
cortisol production in key tissues, 
inhibitors of 11beta-HSD1 have the 
potential to directly and profoundly 
improve insulin resistance, thus 
targeting the fundamental underlying 
cause of type 2 diabetes and 
cardiovascular disease.”

Jonathan Seckl, M.D., Ph.D.
Moncrieff-Arnott Professor of Molecular Medicine
Centre for Cardiovascular Science 
The Queen’s Medical Research Institute, Edinburgh

Sheddase Inhibitors:
Novel Intervention in a Proven Pathway 

“There is compelling evidence suggesting that elevated levels of 
EGFR/HER ligands as well as increased levels of circulating HER2 
extracellular domain (ECD) correlate with poor patient outcomes.  
As early pharmacodynamic data clearly demonstrate that INCB7839 
is impacting both ligand and HER2 shedding, we remain confi dent 
that sheddase inhibition could well represent an important and 
novel approach to treating cancers.” 

Steve Friedman, M.D. 

Senior Vice President, Drug Discovery, Incyte 

Mechanism of Action

Potential Benefi ts

Epidermal growth factor receptor (EGFR) 
signaling pathways consist of four 
known cellular receptors: HER1 (also 
known as EGFR), HER2, HER3, and HER4. 
Normally, these HER pathways are tightly 
regulated. In cancer, signaling through 
these pathways can increase, resulting 
in growth, proliferation, migration, and 
survival of cancer cells. This correlates 
with disease progression and poor 
prognosis.  

Sheddases are enzymes, specifi cally ADAM 
enzymes 10 and 17, that promote growth 
activity through all four HER pathways. 
Several marketed therapies that target 
individual EGFR family members have 
demonstrated that inhibition of HER 
signaling is an effective mechanism for 
treating certain solid tumors.  

Sheddase inhibition blocks two different 
pro-oncogenic mechanisms, generation of 
active EGFR ligands and generation of a 
constitutively active HER2 kinase.

•  Inhibition of additional and/or common
  HER pathways is expected to be   

synergistic with currently approved 
  EGFR inhibitors and improve patient 
  outcomes.
•  Sheddase can activate HER3 through 
  generation of the HER3 ligand, 
  heregulin.  As this pathway is involved 
in resistance to current EGFR targeted 
therapies, decreasing the activity of this

  pathway with inhibitors of sheddase 
  may be benefi cial.

Our lead compound: INCB7839

•  Novel, potent, orally bioavailable.

•  In preclinical models: single agent 
  effi cacy; synergistic with other 
  EGFR therapies; and synergistic with 

chemotherapy.

Clinical Status 

Phase I completed in healthy volunteers

•  INCB7839 was well-tolerated.
•  In a dose-dependent manner, 

INCB7839 decreased HER2 ECD levels,

  a clinically relevant biomarker. 

Phase Ib/IIa trial in refractory cancer 
patients (breast, colorectal, head and 
neck, prostate, non-small cell lung) is 
ongoing 

Phase II trials in HER2+ breast cancer 
planned for the second half of 2007

Phase II trial in an additional solid tumor 
expected to follow in late 2007 or early 
2008 

 
 
 
 
 
 
 
 
 
“Currently approved agents that 
target the EGFR/HER pathway have 
shown limited activity in treating solid 
tumors.  While the reasons for this are 
still emerging, this limited effi cacy in 
metastatic disease may relate to the 
fact that existing treatments inhibit 
only one or two of the HER pathways.  
I believe new agents in development 
that target multiple HER pathways or 
target these pathways through novel 
mechanisms such as inhibition of 
ligand shedding and receptor cleavage 
are likely to lead to superior clinical 
outcomes, especially when used in 
combination with current therapies.”

Allan Lipton, M.D.
Medical Oncology and Hematology
Milton S. Hershey Medical Center
Penn State University College of Medicine 

JAK Inhibitors:
Compelling Approach to Treat Infl ammation, 
Myeloproliferative Disorders and Cancer  

“Multiple activating mutations in JAK2 have recently been identifi ed in 
the majority of myeloproliferative disorders, including polycythemia vera, 
essential thrombocythemia and primary myelofi brosis.  Research results 
suggesting a causal role for these mutations in the pathogenesis of 
myeloproliferative disorders strongly support the development of 
JAK2 inhibitors as targeted drugs for these disorders - many of which 
can be life threatening and for which we lack effective therapies.”

Professor in Hematology and Internal Medicine 
Mayo Clinic College of Medicine, Division of Hematology in the Department of Medicine

Ayalew Tefferi, M.D.

Mechanism of Action

Potential Benefi ts

Program Status

Janus-associated kinases (JAK) are 
enzymes that mediate signaling of 
several important drivers of infl ammatory 
diseases, myeloproliferative disorders 
(MPDs) and malignancies. There are four 
known JAK enzymes: JAK1, 2, 3 and TYK2

•  Known infl ammatory cytokines, such 
  as IL-6, IL-12, and IL-23, signal 
through JAKs to promote 
infl ammation.

•  Activating mutations of JAK2 are 
  present in >90% of polycythemia 
  vera and ~50% of essential 

thrombocythemia and myeloid 
  metaplasia with myelofi brosis. 
•  Aberrant activation of the JAK-STAT 
  pathway has been documented in a 
  variety of cancers.

•  Convenient oral dosing - current 
  best-of-care therapies are injectable. 
•  Expected to be effective in patients 
refractory to anti-TNF therapies. 
•  Rapid onset of action based on data 

from early clinical studies. 

•  Potential to be fi rst targeted therapy 

for MPDs.

•  Broad applicability in a number of 
  autoimmune diseases and malignant

conditions. 

Multiple potent, selective, orally 
bioavailable candidates currently in 
preclinical development

•  >100x selectivity against a broad 
  panel of kinases.
•  10 – 40x selectivity over the JAK3 
  enzyme.

GLP-safety studies successfully completed

Multiple IND applications expected to be 
fi led in 2007

Multiple clinical trials planned in 2007

 
 
 
 
 
 
 
 
 
 
 
 
 
“Recent clinical data with an oral JAK 
inhibitor demonstrating dramatic 
effi cacy and rapid onset of action in 
both rheumatoid arthritis and psoriasis 
represent a signifi cant development in 
our approach to treat these diseases. 
While the data are still early, I believe 
that JAK inhibition is one of the most 
exciting new therapeutic approaches for 
chronic infl ammatory diseases.”

Larry Moreland, M.D.
Professor of Medicine, University of Alabama
Director of the UAB Arthritis Clinical Intervention Program 
Director of the UAB Pittman General Clinical Research Center 

 
 
 
 
“In preclinical studies, INCB8696 has demonstrated a favorable safety 
profi le at doses suffi cient to completely inhibit CCR2 function.  
Given the critical role the CCR2 chemokine receptor is thought to play 
in the formation of MS lesions, we believe our CCR2 antagonist could 
provide a safe and effective approach to treating this chronic and 
debilitating disease.  Preclinical data also suggest that autoimmune 
nephritides are additional indications for this mechanism.”

William Williams, M.D.

Vice President, Exploratory Develpment, Incyte

CCR2 Antagonists:
A Promising Target for Infl ammatory Diseases

“CCR2 is a chemokine receptor that is involved in 

the traffi cking of infl ammatory monocytes.  These 

monocytes are believed to play critical roles in the 

pathogenesis of infl ammatory diseases, including 

multiple sclerosis. Based on the published preclinical 

data on CCR2, an oral CCR2 antagonist may have 

the potential to provide signifi cant therapeutic effects 

in MS, and not cause overt immunosuppression.”

Israel F. Charo, M.D., Ph.D.

Professor of Medicine, University of California, San Francisco

Mechanism of Action

CCR2 antagonists prevent blood 
monocytes from entering tissue and 
becoming infl ammatory macrophages:

•  The severity of infl ammation in a 
  number of disease states correlates 
  with the number of macrophages 

in tissue.

•  In multiple sclerosis (MS), activated  

  macrophages accumulate in the lesions 
  and are associated with destruction of 

the myelin sheath. 

•  In autoimmune nephritides,  
  macrophages are implicated in lupus 

Our lead compound: INCB8696

•  Selective compound with excellent 
  pharmacokinetic properties. 
•  Convenient oral dosing. 

renal pathology.   

Potential Benefi ts

•  Novel mechanism.
•  Potential for effi cacy with minimal 

immunosuppression.

Clinical Status

•  IND fi led for MS with Phase I trials in 
  healthy volunteers planned in 2007. 

 
 
 
 
 
 
    
 
“With six INDs fi led in the last 15 months, 

we have the potential for multiple clinical proof-of-

concept results in 2007.”

Richard Levy, M.D., Senior Vice President, Drug Development, Incyte 

Incyte’s vision is to become a leading drug discovery and development 

company  by  building  a  proprietary  product  pipeline  of  novel  small 

molecule drugs. We have an experienced team with prior success in 

bringing  important  new  drugs  to  market.    We  believe  we  have  the 

resources, experience and drive to improve the lives of patients and 

build sustainable value for our shareholders.

INCYTE PIPELINE

Preclinical

Phase I

Phase II

HIV

Diabetes

Oncology

CCR5 Antagonists
INCB9471
INCB15050

11beta-HSD1
INCB13739

Sheddase Inhibitor
INCB7839: Solid Tumors  
JAK2

Inflammation

CCR2 Antagonists
INCB8696:  MS/Lupus Nephritis
Pfizer Collaboration (as of 11/2005)
JAK2

BO ARD OF  DIRECTORS 

EXE CUTIV E MAN AGEME NT 

Richard U. De Schutter 
Chairman of the Board 
Formerly Chairman 
and Chief Executive Offi cer 
DuPont Pharmaceuticals Company 

Paul A. Friedman, M.D. 
President and Chief Executive Offi cer 
Incyte Corporation 

Barry M. Ariko 
President, Chief Executive Offi cer 
and Chairman 
Mirapoint, Inc. 

Julian C. Baker 
Managing Member 
Baker Bros. Advisors, LLC 

Paul A. Brooke 
Chairman and Chief Executive Offi cer 
Ithaka Acquisition Corp. 
Managing Member, PMSV Holdings, LLC 
Senior Advisor, Morgan Stanley 

Matthew W. Emmens 
Chief Executive Offi cer 
Shire plc 

John F. Niblack, Ph.D. 
Formerly Vice Chairman  
and President of Global Research  
and Development 
Pfi zer Inc.  

Roy A. Whitfi eld 
Formerly Chairman of the Board 
and Chief Executive Offi cer 
Incyte Corporation 

Paul A. Friedman, M.D. 
President and Chief Executive Offi cer 

David C. Hastings 
Executive Vice President 
and Chief Financial Offi cer 

John A. Keller, Ph.D. 
Executive Vice President 
and Chief Business Offi cer 

Brian W. Metcalf, Ph.D. 
Executive Vice President 
and Chief Drug Discovery Scientist 

Patricia A. Schreck 
Executive Vice President 
and General Counsel 

Paula J. Swain 
Executive Vice President, 
Human Resources 

Transfer Agent and Registrar 
Mellon Investor Services LLC 
PO Box 3315 
South Hackensack, New Jersey 07606 
or  
480 Washington Boulevard 
Jersey City, New Jersey 07310 
Phone: 800/522-6645 
TDD for Hearing Impaired: 
800/231-5469 
Foreign Shareholders: 
201/680-6610 
TDD Foreign Shareholders: 
201/680-6578 
www.mellon-investor.com/isd

Annual Meeting
The Annual Meeting of Stockholders
will be held May 22, 2007, at 10:00 a.m.,
Eastern Daylight Time, at the
Hotel du Pont, 11th and Market Streets,
Wilmington, Delaware.

Outside Counsel
Pillsbury Winthrop Shaw Pittman LLP

Independent Registered Public 
Accounting Firm
Ernst & Young LLP

Market Information
Incyte’s Common Stock is listed on
the NASDAQ Global Market under the
symbol INCY.

Investor Relations
You can obtain recent press releases
and other publicly available information
on Incyte by visiting our web site at
www.incyte.com.

Contact
Pamela Murphy
Vice President, Investor Relations and
Corporate Communications
Email: pmurphy@incyte.com

Corporate Headquarters
Incyte Corporation
Experimental Station
Route 141 & Henry Clay Road
Building E336
Wilmington, Delaware 19880
302/498-6700

Forward-looking Statements

Except  for  the  historical  statements  contained  herein,  the  statements  contained  in  this  annual  report,  including  without  limitation,  statements  as  to  the 

anticipated  advancement  and  composition  of  our  pipeline,  the  expected  timing,  progress  and  other  information  regarding  our  preclinical  and  clinical  trials, 

our development plans and goals for 2007 and 2008, plans to present and disclose data from our clinical trials, the potential benefi ts and effectiveness of our 

compounds in treating disease, and the ability of our cash position to advance our pipeline and continue our operations for a stated period of time, are forward-

looking statements within the meaning of the “safe harbor” provisions of the Private Securities Litigation Reform Act of 1995. The forward-looking statements 

are based on our current intent, belief and expectations, using information currently available to us, and are therefore subject to certain risks, uncertainties, 

and assumptions that may cause actual results to differ materially, including the results of further scientifi c research, the impact of technological advances and 

competition, unanticipated delays or uses of capital, and other risks discussed in our Annual Report on Form 10-K for the year ended December 31, 2006, which 

is contained herein, and in our fi lings with the Securities and Exchange Commission. These forward-looking statements speak only as of the date hereof.  Incyte 

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disclaims any intent or obligation to update these forward-looking statements.

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Incyte Corporation 

Experimental Station 

Route 141 & Henry Clay Road, Building E336 

Wilmington, DE  19880 

www.incyte.com

THE DRIVE TO DISCOVER.   

THE EXPERIENCE TO DELIVER.

Annual Report 2006