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Pacific Ethanol, Inc.

peix · NASDAQ Basic Materials
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Employees 201-500
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FY2008 Annual Report · Pacific Ethanol, Inc.
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UNITED STATES  
SECURITIES AND EXCHANGE COMMISSION  
Washington, D.C. 20549  

FORM 10-K  

(Mark One) 

 

 

ANNUAL REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 
1934 For the fiscal year ended December 31, 2008 

OR 

TRANSITION  REPORT  PURSUANT  TO  SECTION  13  OR  15(d)  OF  THE  SECURITIES  EXCHANGE 
ACT OF 1934 For the transition period from                  to                

Commission file number: 000-21467 
PACIFIC ETHANOL, INC. 
(Exact name of registrant as specified in its charter)  

Delaware 
(State or other jurisdiction of incorporation or organization) 

41-2170618 
(I.R.S. Employer Identification No.) 

400 Capitol Mall, Suite 2060, Sacramento, California 
(Address of principal executive offices) 

95814 
(Zip Code) 
Registrant’s telephone number, including area code: (916) 403-2123 

Securities registered pursuant to Section 12(b) of the Act: Common Stock, $0.001 par value   

Securities registered pursuant to Section 12(g) of the Act: None 
(Title of class)  

Indicate by check mark whether the registrant is a well-known seasoned issuer, as defined in Rule 405 of the Securities 

Act. Yes      No   

Indicate by check mark if the registrant is not required to file reports pursuant to Section 13 or Section 15(d) of the Act. 

Yes      No   

Indicate by check mark whether the registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the 
Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required 
to file such reports), and (2) has been subject to such filing requirements for the past 90 days.  Yes      No   

Indicate by check  mark if disclosure of delinquent filers in response to Item 405 of Regulation S-K is not contained 
herein,  and  will  not  be  contained,  to  the  best  of  registrant’s  knowledge,  in  definitive  proxy  or  information  statements 
incorporated by reference in Part III of this Form 10-K or any amendment to this Form 10-K.  

Indicate by check mark whether the registrant is a large accelerated filer, an accelerated filer, or a non-accelerated filer, 
or  a  smaller  reporting  company.  See  the  definitions  of  ―large  accelerated  filer,‖  ―accelerated  filer‖  and  ―smaller  reporting 
company‖ in Rule 12b-2 of the Exchange Act. (Check one): 

Large accelerated filer   
Non-accelerated filer   (Do not check if a smaller reporting company) 

Accelerated filer   
Smaller reporting company   

Indicate  by  check  mark  whether  the  registrant  is  a  shell  company  (as  defined  in  Rule  12b-2  of  the  Act). 

Yes      No   

The aggregate market value of the voting common equity held by nonaffiliates of the registrant computed by reference 
to  the  closing  sale  price  of  such  stock,  was  approximately  $95.9  million  as  of  June  29,  2008,  the  last  business  day  of  the 
registrant’s most recently completed second fiscal quarter. The registrant has no non-voting common equity. 

The  number  of  shares  of  the  registrant’s  common  stock,  $0.001  par  value,  outstanding  as  of  March  26,  2009  was 

57,750,319. 

DOCUMENTS INCORPORATED BY REFERENCE:   

Part III incorporates by reference certain information from the registrant’s proxy statement (the ―Proxy Statement‖) for 

the 2009 Annual Meeting of Stockholders to be filed on or before April 30, 2009. 

 
 
  
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
TABLE OF CONTENTS 

PART I 

Page 

Item 1. 

Business ...................................................................................................................................... 1 

Item 1A.  Risk Factors. ............................................................................................................................. 13 

Item 1B.  Unresolved Staff Comments. .................................................................................................... 24 

Item 2. 

Properties. ................................................................................................................................. 24 

Item 3. 

Legal Proceedings. .................................................................................................................... 24 

Item 4. 

Submission of Matters to a Vote of Security Holders............................................................... 26 

PART II 

Item 5.  Market For Registrant’s Common Equity, Related Stockholder Matters and Issuer 

Purchases of Equity Securities. ................................................................................................. 27 

Item 6. 

Selected Financial Data. ............................................................................................................ 30 

Item 7.  Management’s Discussion and Analysis of Financial Condition and Results of 

Operations. ................................................................................................................................ 31 

Item 7A.  Quantitative and Qualitative Disclosures About Market Risk. ................................................. 52 

Item 8. 

Financial Statements and Supplementary Data. ........................................................................ 53 

Item 9. 

Changes in and Disagreements with Accountants on Accounting and Financial 
Disclosure. ................................................................................................................................ 53 

Item 9A.  Controls and Procedures ........................................................................................................... 53 

Item 9A(T)  Controls and Procedures ......................................................................................................... 57 

Item 9B.  Other Information. .................................................................................................................... 57 

PART III 

Item 10.  Directors, Executive Officers and Corporate Governance ........................................................ 57 

Item 11.  Executive Compensation .......................................................................................................... 57 

Item 12.  Security Ownership of Certain Beneficial Owners and Management and Related 

Stockholder Matters .................................................................................................................. 57 

Item 13.  Certain Relationships and Related Transactions, and Director Independence .......................... 57 

Item 14.  Principal Accounting Fees and Services ................................................................................... 57 

Item 15.  Exhibits, Financial Statement Schedules .................................................................................. 57 

Index to Financial Statements .................................................................................................................... F-1 

PART IV 

 
 
 
 
CAUTIONARY STATEMENT 

All statements included or incorporated by reference in this Annual Report on Form 10-K, other than 
statements or characterizations of historical fact, are forward-looking statements. Examples of forward-
looking statements include, but are not limited to, statements concerning projected net sales, costs and 
expenses and gross margins; our ability to restructure our indebtedness; our ability to continue as a 
going concern; our accounting estimates, assumptions and judgments; our success in pending litigation; 
the demand for ethanol and its co-products; the competitive nature of and anticipated growth in our 
industry; production capacity and goals; our ability to consummate acquisitions and integrate their 
operations successfully; and our prospective needs for additional capital. These forward-looking 
statements are based on our current expectations, estimates, approximations and projections about our 
industry and business, management’s beliefs, and certain assumptions made by us, all of which are 
subject to change. Forward-looking statements can often be identified by words such as ―anticipates,‖ 
―expects,‖ ―intends,‖ ―plans,‖ ―predicts,‖ ―believes,‖ ―seeks,‖ ―estimates,‖ ―may,‖ ―will,‖ ―should,‖ 
―would,‖ ―could,‖ ―potential,‖ ―continue,‖ ―ongoing,‖ similar expressions and variations or negatives 
of these words. These statements are not guarantees of future performance and are subject to risks, 
uncertainties and assumptions that are difficult to predict. Therefore, our actual results could differ 
materially and adversely from those expressed in any forward-looking statements as a result of various 
factors, some of which are listed under ―Risk Factors‖ in Item 1A of this Report. These forward-looking 
statements speak only as of the date of this Report. We undertake no obligation to revise or update 
publicly any forward-looking statement for any reason, except as otherwise required by law.  

PART I 

Item 1.  Business. 

Recent Developments 

Our financial statements have been prepared on a going concern basis, which contemplates the 

realization of assets and the satisfaction of liabilities in the normal course of business. As a result of 
ethanol industry conditions that have negatively affected our business, we do not currently have sufficient 
liquidity to meet our anticipated working capital, debt service and other liquidity needs in the very near-
term. We have suspended operations at three of our four ethanol production facilities due to market 
conditions and in an effort to conserve capital. We have also taken and expect to take additional steps to 
preserve liquidity. However, despite any additional cost-saving steps we may take, we believe that we 
have sufficient working capital to continue operations only until approximately April 30, 2009 at the 
latest unless we successfully restructure our debt, experience a significant improvement in margins and 
obtain other sources of liquidity.   

We are in default under our construction-related term loans in the aggregate amount of 
approximately $230 million and under Kinergy’s revolving line of credit as well as $31.5 million in notes 
payable to another lender. In February 2009, we entered into forbearance agreements with each of the 
lenders, which were amended in March 2009, under which the lenders agreed to forbear from exercising 
their rights until April 30, 2009 absent further defaults. Although we are actively pursuing a number of 
alternatives, including seeking to restructure our debt and seeking to raise additional debt or equity 
financing, or both, there can be no assurance that we will be successful. If we cannot restructure our debt 
and obtain sufficient liquidity in the very near term, we may need to seek to protection under the U.S. 
Bankruptcy Code. See ―Risk Factors‖ and ―Managements Discussions and Analysis of Financial 
Condition and Results of Operations.‖ 

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Business Overview 

Our primary goal is to be the leading marketer and producer of low carbon renewable fuels in the 

Western United States.  

We produce and sell ethanol and its co-products, including wet distillers grain, or WDG, and 

provide transportation, storage and delivery of ethanol through third-party service providers in the 
Western United States, primarily in California, Nevada, Arizona, Oregon, Colorado, Idaho and 
Washington. We have extensive customer relationships throughout the Western United States and 
extensive supplier relationships throughout the Western and Midwestern United States. 

Our customers are integrated oil companies and gasoline marketers who blend ethanol into 

gasoline. We supply ethanol to our customers either from our own ethanol production facilities located 
within the regions we serve, or with ethanol procured in bulk from other producers. In some cases, we 
have marketing agreements with ethanol producers to market all of the output of their facilities. 
Additionally, we have customers who purchase our co-products for animal feed and other uses. 

According to the United States Department of Energy, or DOE, total annual gasoline 

consumption in the United States is approximately 140 billion gallons. Total annual ethanol consumption 
represented less than 7% of this amount in 2008. We believe that the domestic ethanol industry has 
substantial potential for growth to initially reach what we estimate is an achievable level of at least 10% 
of the total annual gasoline consumption in the United States, or approximately 14 billion gallons of 
ethanol annually and thereafter up to 36 billion gallons of ethanol annually under the new national 
Renewable Fuel Standards, or RFS, by 2022. See ―—Governmental Regulation.‖  

In  September  2008,  we  completed  construction  of  our  fourth  ethanol  facility.  Our  four  ethanol 

facilities, which produce ethanol and its co-products, are as follows:  

In addition, we own a 42% interest in Front Range Energy, LLC, or Front Range, which owns a 

facility located in Windsor, Colorado, with annual production capacity of up to 50 million gallons. We 
also intend to either construct or acquire additional production facilities as financial resources and 
business prospects make the construction or acquisition of these facilities advisable. See ―—Production 
Facilities.‖ 

The ethanol industry has experienced significant adverse conditions over the course of the last 12 

months, including prolonged negative operating margins. We, too, have experienced these adverse 
conditions as well as severe working capital and liquidity shortages, and in response to such conditions, 
we have reduced production significantly until market conditions resume to acceptable levels and 
working capital becomes available. We first reduced production in December 2008 and continued to 
reduce production through the first quarter of 2009. Currently, we have ceased production at our Madera, 
Magic Valley and Stockton facilities. We continue to operate our Columbia and Front Range facilities. 
We continue to assess market conditions and when appropriate, provided we have adequate available 
working capital, we plan to bring these facilities back to operation. 

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Facility NameFacility LocationDate Operations BeganEstimated Annual Production Capacity (gallons)StocktonStockton, CASeptember 200860,000,000Magic ValleyBurley, IDApril 200860,000,000ColumbiaBoardman, ORSeptember 200740,000,000MaderaMadera, CAOctober 200640,000,000 
 
We intend to reach our goal to be the leading marketer and producer of low carbon renewable 

fuels in the Western United States in part by expanding our relationships with customers and third-party 
ethanol producers to market higher volumes of ethanol, by expanding our relationships with animal feed 
distributors and end users to build local markets for WDG, the primary co-product of our ethanol 
production, and by expanding the market for ethanol by continuing to work with state governments to 
encourage the adoption of policies and standards that promote ethanol as a fuel additive and 
transportation fuel.  

Company History 

We are a Delaware corporation formed in February 2005. In March 2005, we completed a 

transaction, or Share Exchange Transaction, with the shareholders of Pacific Ethanol, Inc., a California 
corporation, or PEI California, and the holders of the membership interests of each of Kinergy, LLC, or 
Kinergy, and ReEnergy, LLC, or ReEnergy. Upon completion of the Share Exchange Transaction, we 
acquired all of the issued and outstanding shares of capital stock of PEI California and all of the 
outstanding membership interests of each of Kinergy and ReEnergy. Immediately prior to the 
consummation of the Share Exchange Transaction, our predecessor, Accessity Corp., a New York 
corporation, or Accessity, reincorporated in the State of Delaware under the name Pacific Ethanol, Inc.  

Our main Internet address is http://www.pacificethanol.net. Our annual reports on Form 10-K, 

quarterly reports on Form 10-Q, current reports on Form 8-K, amendments to those reports and other 
Securities and Exchange Commission, or SEC, filings are available free of charge through our website as 
soon as reasonably practicable after these reports are electronically filed with, or furnished to, the SEC. 
Our common stock trades on the Nasdaq Global Market under the symbol PEIX. The inclusion of our 
website address in this Report does not include or incorporate by reference into this report any 
information contained on our website.  

Competitive Strengths 

We believe that our competitive strengths include the following: 

  Our customer and supplier relationships. We have developed extensive business 
relationships with our customers and suppliers. In particular, we have developed extensive business 
relationships with major and independent un-branded gasoline suppliers who collectively control the 
majority of all gasoline sales in California and other Western states. In addition, we have developed 
extensive business relationships with ethanol and grain suppliers throughout the Western and 
Midwestern United States. 

  Our ethanol distribution network. We believe that we have a competitive advantage due 
to our experience in marketing to the segment of customers in major metropolitan and rural markets 
in the Western United States. We have developed an ethanol distribution network for delivery of 
ethanol by truck to virtually every significant fuel terminal as well as to numerous smaller fuel 
terminals throughout California and other Western states. Fuel terminals have limited storage 
capacity and we have been successful in securing storage tanks at many of the terminals we service. 
In addition, we have an extensive network of third-party delivery trucks available to deliver ethanol 
throughout the Western United States.  

  Our strategic locations. We believe that our focus on developing and acquiring ethanol 

production facilities in markets where local characteristics create the opportunity to capture a 
significant production and shipping cost advantage over competing ethanol production facilities 
provides us with competitive advantages, including transportation cost, delivery timing and logistical 
advantages as well as higher margins associated with the local sale of WDG and other co-products.  

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  Our modern technologies. Our existing production facilities use the latest production 
technologies to take advantage of state-of-the-art technical and operational efficiencies in order to 
achieve lower operating costs and more efficient production of ethanol and its co-products and 
reduce our use of carbon-based fuels.  

  Our experienced management. Neil M. Koehler, our President and Chief Executive 
Officer, has over 20 years of experience in the ethanol production, sales and marketing industry. 
Mr. Koehler is a Director of the California Renewable Fuels Partnership, a Director of the Renewable 
Fuels Association, or RFA, and is a frequent speaker on the issue of renewable fuels and ethanol 
marketing and production. In addition to Mr. Koehler, we have seasoned managers with many years 
of experience in the ethanol, fuel, energy and feed industries, leading our various departments. We 
believe that the experience of our management over the past two decades and our ethanol marketing 
operations have enabled us to establish valuable relationships in the ethanol industry and understand 
the business of marketing and producing ethanol.  

We believe that these advantages will allow us to capture an increasing share of the total market 

for ethanol and its co-products.  

Business and Growth Strategy 

Our primary goal is to be the leading marketer and producer of low carbon renewable fuels in the 

Western United States. Key elements of our business and growth strategy to achieve this objective 
include: 

  Expand ethanol marketing revenues, ethanol markets and distribution infrastructure. We 

plan to increase our ethanol marketing revenues by expanding our relationships with third-party 
ethanol producers to market higher volumes of ethanol throughout the Western United States when 
market conditions are favorable. In addition, we plan to expand relationships with animal feed 
distributors and dairy operators to build local markets for WDG. We also plan to expand the market 
for ethanol by continuing to work with state governments to encourage the adoption of policies and 
standards that promote ethanol as a fuel additive and ultimately as a primary transportation fuel. In 
addition, we plan to expand our distribution infrastructure by increasing our ability to provide 
transportation, storage and related logistical services to our customers throughout the Western United 
States. 

  Additional production capacity to meet expected future demand for ethanol. We have 
completed our development efforts in 2008 by building additional ethanol production facilities to 
meet the current and expected future demand for ethanol. This development provides us with annual 
production capacity of 220 million gallons, achieving our goal we set in 2005. We are also exploring 
opportunities to add production capacity through strategic acquisitions of existing or pending ethanol 
production facilities that meet our cost and location criteria.  

  Focus on cost efficiencies. We plan to develop or acquire ethanol production facilities in 

markets where local characteristics create the opportunity to capture a significant production and 
shipping cost advantage over competing ethanol production facilities. We believe a combination of 
factors will enable us to achieve this cost advantage, including: 

o  Locations near fuel blending facilities will enable lower ethanol transportation costs 
and enjoy timing and logistical advantages over competing locations which require 
ethanol to be shipped over much longer distances.  

o  Locations adjacent to major rail lines will enable the efficient delivery of corn in 

large unit trains from major corn-producing regions.  

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o  Locations near large concentrations of dairy and/or beef cattle will enable delivery of 

WDG over short distances without the need for costly drying processes.  

In addition to these location-related efficiencies, we have incorporate advanced design 

elements into our new production facilities to take advantage of state-of-the-art technical and 
operational efficiencies.  

  Explore new technologies and renewable fuels. We are evaluating a number of 
technologies that may increase the efficiency of our ethanol production facilities and reduce our use 
of carbon-based fuels. In addition, we are exploring the feasibility of using different and potentially 
abundant and cost-effective feedstocks, such as cellulosic plant biomass, to supplement corn as the 
basic raw material used in the production of ethanol. On January 29, 2008, the DOE awarded us 
$24.3 million in matching funds to build the first cellulosic ethanol demonstration plant in the 
Northwest United States. 

  Employ risk mitigation strategies. As sufficient working capital is available, we seek to 
mitigate our exposure to commodity price fluctuations by purchasing forward a portion of our corn 
and natural gas requirements through fixed-price contracts with our suppliers, as well as, entering 
into derivative instruments to fix or establish a range of corn and natural gas prices. To mitigate 
ethanol inventory price risks, we may sell a portion of our production forward under fixed- or index-
price contracts, or both. We may hedge a portion of the price risks associated with index-price 
contracts by selling exchange-traded unleaded gasoline futures contracts. Proper execution of these 
risk mitigation strategies can reduce the volatility of our gross profit margins.  

  Evaluate and pursue acquisition opportunities. We intend to evaluate and pursue 
opportunities to acquire additional ethanol production, storage and distribution facilities and related 
infrastructure as financial resources and business prospects make the acquisition of these facilities 
advisable. In addition, we may also seek to acquire facility sites under development.  

Industry Overview and Market Opportunity 

Overview of Ethanol Market  

The primary applications for fuel-grade ethanol in the United States include: 

  Octane enhancer. On average, regular unleaded gasoline has an octane rating of 87 and 

premium unleaded has an octane rating of 91. In contrast, pure ethanol has an average octane 
rating of 113. Adding ethanol to gasoline enables refiners to produce greater quantities of lower 
octane blend stock with an octane rating of less than 87 before blending. In addition, ethanol is 
commonly added to finished regular grade gasoline as a means of producing higher octane mid-
grade and premium gasoline.  

  Renewable fuels. Ethanol is blended with gasoline in order to enable gasoline refiners to 

comply with a variety of governmental programs, in particular, the national RFS designed to 
promote alternatives to fossil fuels. See ―—Governmental Regulation.‖ 

  Fuel blending. In addition to its performance and environmental benefits, ethanol is used 

to extend fuel supplies. As the need for automotive fuel in the United States increases and the 
dependence on foreign crude oil and refined products grows, the United States is increasingly 
seeking domestic sources of fuel. Much of the ethanol blending throughout the United States is 
done for the purpose of extending the volume of fuel sold at the gasoline pump. Furthermore, 
conditions in Brazil, where ethanol accounts for 40% of the gasoline market and is sold in blends 

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with gasoline ranging from 25% to 100%, suggest that ethanol could capture a much greater 
portion of the United States market in the future.  

The ethanol fuel industry is greatly dependent upon tax policies and environmental regulations 

that favor the use of ethanol in motor fuel blends in the United States. See ―—Governmental Regulation.‖ 
Ethanol blends have been either wholly or partially exempt from the federal excise tax on gasoline since 
1978. The current federal excise tax on gasoline is $0.184 per gallon and is paid at the terminal by 
refiners and marketers. If the fuel is blended with ethanol, the blender may claim a $0.45 per gallon tax 
credit for each gallon of ethanol used in the mixture. Federal law also requires the sale of oxygenated 
fuels in certain carbon monoxide non-attainment Metropolitan Statistical Areas, or MSAs, during at least 
four winter months, typically November through February.  

In addition, the Energy Independence and Security Act of 2007, which was signed into law in 

December 2007, significantly increased the prior national RFS. The new national RFS significantly 
increases the mandated use of renewable fuels to 11.1 billion gallons in 2009 and 13.0 billion gallons in 
2010, and rises incrementally and peaks at 36.0 billion gallons by 2022. The new national RFS mandates 
include renewable fuel increases, with corn-based or ―conventional‖ ethanol to 10.5 billion gallons in 
2009 and 12.0 billion gallons in 2010, reaching a peak of 15.0 billion gallons by 2015. Beginning in 2016, 
increases in the new national RFS targets must be met with advanced biofuels, defined as cellulosic 
ethanol and other biofuels derived from feedstock other than corn starch. We believe that these increases 
will bolster demand for ethanol.  

In January 2007, California’s Governor signed an executive order directing the California Air 
Resource Board to implement a Low Carbon Fuels Standard for transportation fuels. The Governor’s 
office estimates that the standard will have the effect of increasing current renewable fuels use in 
California by three to five times by 2020. The State of Oregon implemented a state-wide renewable fuels 
standard effective January 2008. This standard requires a 10% ethanol blend in every gallon of gasoline 
and is expected to cause the use of approximately 160 million gallons of ethanol per year in Oregon. 

According to the RFA, the domestic ethanol industry produced approximately 9.2 billion gallons 

of ethanol in 2008, an increase of approximately 42% from the approximately 6.5 billion gallons of 
ethanol produced in 2007. We believe that the ethanol market in California alone consumed 
approximately 1.1 billion gallons in 2008, representing approximately 12% of the national market. 
However, the Western United States has relatively few ethanol facilities and local ethanol production 
levels are substantially below the local demand for ethanol. The balance of ethanol is shipped via rail 
from the Midwest to the Western United States. Gasoline and diesel fuel that supply the major fuel 
terminals are shipped in pipelines throughout portions of the Western United States. Unlike gasoline and 
diesel fuel, however, ethanol is not shipped in these pipelines because ethanol has an affinity for mixing 
with water already present in the pipelines. When mixed, water dilutes ethanol and creates significant 
quality control issues. Therefore, ethanol must be trucked from rail terminals to regional fuel terminals, or 
blending racks.  

We believe that approximately 90% of the ethanol produced in the United States is made in the 

Midwest from corn. According to the DOE, ethanol is typically blended at 5.7% to 10% by volume, but is 
also blended at up to 85% by volume for vehicles designed to operate on 85% ethanol. Compared to 
gasoline, ethanol is generally considered to be cleaner burning and contains higher octane. We anticipate 
that the increasing demand for transportation fuels coupled with limited opportunities for gasoline 
refinery expansions and the growing importance of reducing CO2 emissions through the use of renewable 
fuels will generate additional growth in the demand for ethanol in the Western United States.  

Ethanol prices, net of tax incentives offered by the federal government, are generally positively 

correlated to fluctuations in gasoline prices. In addition, we believe that ethanol prices in the Western 

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United States are typically $0.15 to $0.20 per gallon higher than in the Midwest due to the freight costs of 
delivering ethanol from Midwest production facilities. 

According to the DOE, total annual gasoline consumption in the United States is approximately 

140 billion gallons and total annual ethanol consumption represented less than 7% of this amount in 2008. 
We believe that the domestic ethanol industry has substantial potential for growth to initially reach what 
we estimate is an achievable level of at least 10% of the total annual gasoline consumption in the United 
States, or approximately 14 billion gallons of ethanol annually and thereafter up to 36 billion gallons of 
ethanol annually required under the new national RFS by 2022.  

While we believe that the overall national market for ethanol will grow, we believe that the 

market for ethanol in certain geographic areas such as California could experience either increases or 
decreases in demand depending on the preferences of petroleum refiners and state policies. See ―Risk 
Factors.‖ 

Overview of Ethanol Production Process 

The production of ethanol from starch- or sugar-based feedstocks has been refined considerably 

in recent years, leading to a highly-efficient process that we believe now yields substantially more energy 
in the ethanol and co-products than is required to make the products. The modern production of ethanol 
requires large amounts of corn, or other high-starch grains, and water as well as chemicals, enzymes and 
yeast, and denaturants such as unleaded gasoline or liquid natural gas, in addition to natural gas and 
electricity. 

In the dry milling process, corn or other high-starch grains are first ground into meal and then 
slurried with water to form a mash. Enzymes are then added to the mash to convert the starch into the 
simple sugar, dextrose. Ammonia is also added for acidic (pH) control and as a nutrient for the yeast. The 
mash is processed through a high temperature cooking procedure, which reduces bacteria levels prior to 
fermentation. The mash is then cooled and transferred to fermenters, where yeast is added and the 
conversion of sugar to ethanol and CO2 begins. 

After fermentation, the resulting ―beer‖ is transferred to distillation, where the ethanol is 

separated from the residual ―stillage.‖ The ethanol is concentrated to 190 proof using conventional 
distillation methods and then is dehydrated to approximately 200 proof, representing 100% alcohol levels, 
in a molecular sieve system. The resulting anhydrous ethanol is then blended with about 5% denaturant, 
which is usually gasoline, and is then ready for shipment to market. 

The residual stillage is separated into a coarse grain portion and a liquid portion through a 

centrifugation process. The soluble liquid portion is concentrated to about 40% dissolved solids by an 
evaporation process. This intermediate state is called condensed distillers solubles, or syrup. The coarse 
grain and syrup portions are then mixed to produce WDG or can be mixed and dried to produce dried 
distillers grains with solubles, or DDGS. Both WDG and DDGS are high-protein animal feed products.  

Overview of Distillers Grains Market 

According to the National Corn Growers Association, approximately 15 million tons of dried 
distillers grains were produced during the 2007 and 2008 crop year and fed to livestock. Last year, an 
estimated 720 million bushels of corn from feed rations was displaced with these distillers grains, 
allowing the corn to be used in other markets. 

In the United States, most distillers grains are produced in the Midwest, where producers dry the 
grains before shipping. Successful and profitable delivery of DDGS from the Midwest faces a number of 
challenges, including product inconsistency, handling difficulty and lower feed values. By not drying the 

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distillers grains and by shipping WDG locally, we believe that we will be able to preserve the feed 
integrity of these grains. 

Historically, the market price for distillers grains has been stable in comparison to the market 

price for ethanol. We believe that the market price of DDGS is determined by a number of factors, 
including the market value of corn, soybean meal and other competitive ingredients, the performance or 
value of DDGS in a particular feed formulation and general market forces of supply and demand. We also 
believe that nationwide, the market price of distillers grains historically has been influenced by producers 
of distilled spirits and more recently by the large corn dry-millers that operate fuel ethanol facilities. The 
market price of distillers grains is also often influenced by nutritional models that calculate the feed value 
of distillers grains by nutritional content.  

Customers 

We produce and also purchase from third-parties and resell ethanol to various customers in the 
Western United States. We also arrange for transportation, storage and delivery of ethanol purchased by 
our customers through our agreements with third-party service providers. Our revenue is obtained 
primarily from sales of ethanol to large oil companies. We began producing ethanol in the fourth quarter 
of 2006. 

During 2008, 2007 and 2006, we produced or purchased from third parties and resold an 

aggregate of approximately 272 million, 191 million and 102 million gallons of fuel-grade ethanol to 
approximately 66 customers, 61 customers and 60 customers, respectively. Sales to our two largest 
customers in 2008 and in 2007 represented approximately 32% of our net sales for each of those years. 
Sales to our two largest customers in 2006 represented approximately 25% of our net sales. Customers 
who accounted for 10% or more of our net sales in 2008 and 2007 were Chevron Products USA and 
Valero Marketing. Customers who accounted for 10% or more of our net sales in 2006 were New West 
Petroleum and Chevron Products USA. Sales to each of our other customers represented less than 10% of 
our net sales in each of 2008, 2007 and 2006.  

Most of the major metropolitan areas in the Western United States have fuel terminals served by 
rail, but other major metropolitan areas and more remote smaller cities and rural areas do not. We believe 
that we have a competitive advantage due to our experience in marketing to the segment of customers in 
major metropolitan and rural markets in the Western United States. We manage the complicated logistics 
of shipping ethanol purchased from third-parties from the Midwest by rail to intermediate storage 
locations throughout the Western United States and trucking the ethanol from these storage locations to 
blending racks where the ethanol is blended with gasoline. We believe that by establishing an efficient 
service for truck deliveries to these more remote locations, we have differentiated ourselves from our 
competitors. In addition, by producing ethanol in the Western United States, we believe that we will 
benefit from our ability to increase spot sales of ethanol from this additional supply following ethanol 
price spikes caused from time to time by rail delays in delivering ethanol from the Midwest to the 
Western United States. In addition to producing ethanol, we produce ethanol co-products such as WDG. 
We endeavor to position WDG as the protein feed of choice for cattle based on its nutritional 
composition, consistency of quality and delivery, ease of handling and its mixing ability with other feed 
ingredients. We expect to be one of the few WDG producers with production facilities located in the 
Western United States and we primarily sell our WDG to dairy farmers in close proximity to our ethanol 
production facilities. 

Suppliers 

Our marketing operations are dependent upon various producers of fuel-grade ethanol for our 
ethanol supplies. In addition, we provide ethanol transportation, storage and delivery services through 
third-party service providers with whom we have contracted to receive ethanol at agreed upon locations 

-8- 

 
from our suppliers and to store and/or deliver the ethanol to agreed upon locations on behalf of our 
customers. These contracts generally run from year-to-year, subject to termination by either party upon 
advance written notice before the end of the then-current annual term. We also transport ethanol with our 
own fleet of railcars, which we intend to expand to support the continuing growth of our business. 

During 2008, 2007 and 2006, we purchased fuel-grade ethanol and corn, the largest component in 

producing ethanol, from our suppliers. Purchases from our two largest suppliers in 2008 represented 
approximately 49% of our total ethanol and corn purchases. Purchases from our three largest ethanol and 
corn suppliers in 2007 represented approximately 47% of our total ethanol and corn purchases. Purchases 
from our three largest ethanol suppliers in 2006 represented approximately 50% of our total ethanol and 
corn purchases. Purchases from each of our other suppliers represented less than 10% of total ethanol and 
corn purchases in 2008, 2007 and 2006. 

Our ethanol production operations are dependent upon various raw materials suppliers, including 

suppliers of corn, natural gas, electricity and water. The cost of corn is the most important variable cost 
associated with the production of ethanol. An ethanol plant must be able to efficiently ship corn from the 
Midwest via rail and cheaply and reliably truck ethanol to local markets. We believe that our existing 
grain receiving facilities at our ethanol facilities are some of the most efficient grain receiving facilities in 
the United States. We source corn using standard contracts, such as spot purchases, forward purchases 
and basis contracts. When we have the resources to do so, we seek to limit our exposure to raw material 
price fluctuations by purchasing forward a portion of our corn requirements on a fixed price basis and by 
purchasing corn and other raw materials futures contracts. In addition, to help protect against supply 
disruptions, we may maintain inventories of corn at each of our facilities. 

Production Facilities 

The table below provides an overview of our ethanol production facilities. 

Location ...................................................................................  
Quarter/Year operations began ................................................  
Annual design basis ethanol 

Madera 
Facility 
Madera, CA 
4th Qtr., 2006 

Front Range 
Facility(1) 
Windsor, CO 
2nd Qtr., 2006 

production capacity (in millions 
of gallons) .............................................................................  

35 

40 

Approximate maximum annual 

ethanol production capacity (in 
millions of gallons) ...............................................................  
Ownership ...............................................................................  
Primary energy source .............................................................  
Estimated annual WDG 
production capacity (in 
thousands of tons) .................................................................  

40 
100% 
Natural Gas 

293 

50 
42% 
Natural Gas 

Columbia 
Facility 
Boardman, OR 
3rd Qtr., 2007 

Magic 
Valley 
Facility 
Burley, ID 
2nd Qtr., 2008 

Stockton 
Facility 
Stockton, CA 
3rd Qtr., 2008 

35 

50 

50 

40 
100% 
Natural Gas 

60 
100% 
Natural Gas 

60 
100% 
Natural Gas 

335 

293 

418 

418 

——————— 
(1)  We own 42% of Front Range, the entity that owns the facility located in Windsor, Colorado. 

The ethanol industry has experienced significant adverse conditions over the course of the last 12 

months, including prolonged negative operating margins. We, too, have experienced these adverse 
conditions as well as severe working capital and liquidity shortages, and in response to such conditions, 
we have reduced production significantly until market conditions resume to acceptable levels and 
working capital becomes available. We first reduced production in December 2008 and continued to 
reduce production through the first quarter of 2009. Currently, we have ceased production at our Madera, 
Magic Valley and Stockton facilities.  We continue to operate our Columbia and Front Range facilities. 
We continue to assess market conditions and when appropriate, provided we have adequate available 
working capital, we plan to bring these facilities back to operation. 

-9- 

 
 
Site Location Criteria 

Our site location criteria encompass many factors, including proximity of fuel blending facilities 

and major rail lines, good road access, water and utility availability and adequate space for equipment and 
truck movement. One of our primary business and growth strategies is to develop or acquire ethanol 
production facilities in markets where local characteristics create the opportunity to capture a significant 
production and shipping cost advantage over competing ethanol production facilities. Therefore, it is 
critical that our production sites are located near fuel blending facilities in the Western United States 
because many of our competitors ship ethanol over long distances from the Midwest. Also, close 
proximity to major rail lines to receive corn shipments from Midwest producers is critical.   

Marketing Arrangements 

We have exclusive agreements with third-party ethanol producers, including Calgren Renewable 
Fuels, LLC and Front Range, the latter of which we are a minority owner, to market and sell their entire 
ethanol production volumes. Calgren Renewable Fuels, LLC owns and operates an ethanol production 
facility in Pixley, California with annual production capacity of 55 million gallons. Front Range owns and 
operates an ethanol production facility in Windsor, Colorado with annual production capacity of 50 
million gallons. We also have an exclusive agreement to market and sell WDG produced at the facility 
owned by Front Range. We intend to evaluate and pursue opportunities to enter into marketing 
arrangements with other ethanol producers as business prospects make these marketing arrangements 
advisable.  

Competition 

We operate in the highly competitive ethanol marketing and production industry. The largest 
ethanol producer in the United States is ADM, with wet and dry mill plants in the Midwest and a total 
production capacity of about 1.25 billion gallons per year, or approximately 14% of total United States 
ethanol production in 2008. According to the RFA, there are approximately 170 ethanol facilities 
currently operating with a combined annual production capacity of approximately 10.6 billion gallons. In 
addition, we believe that approximately five new ethanol facilities or expansions of existing facilities are 
currently under construction with an estimated combined future annual production capacity of 
approximately 1.0 billion gallons.  

We believe that many smaller ethanol facilities rely on marketing groups such as POET Ethanol 

Products, Aventine Renewable Energy, Inc., Eco Energy and Renewable Products Marketing Group LLC 
to move their product to market. We believe that, because ethanol is a commodity, many of the Midwest 
ethanol producers can target the Western United States, though ethanol producers further west in states 
such as Nebraska and Kansas often enjoy delivery cost advantages.  

In the second half of 2008 and into the first quarter of 2009, we and our competitors have reduced 
production and/or experienced significant working capital deficits. Some of our competitors have filed for 
protection under the United States Bankruptcy Code. As a result, our competition may change in the near 
term by either further declining production or entrance by others in the marketplace, for example, through 
purchases of facilities through liquidation. These competitors may even be some of our current customers. 

We believe that our competitive strengths include our strategic locations in the Western United 

States, our extensive ethanol distribution network, our extensive customer and supplier relationships, our 
use of modern technologies at our production facilities and our experienced management. We believe that 
these advantages will allow us to capture an increasing share of the total market for ethanol and its co-
products and earn favorable margins on ethanol and its co-products that we produce.  

-10- 

 
Our strategic focus on particular geographic locations designed to exploit cost efficiencies may 
nevertheless result in higher than expected costs as a result of more expensive raw materials and related 
shipping costs, such as corn, which generally must be transported from the Midwest. If the costs of 
producing and shipping ethanol and its co-products over short distances are not advantageous relative to 
the costs of obtaining raw materials from the Midwest, then the planned benefits of our strategic locations 
may not be realized. 

Governmental Regulation 

Our business is subject to extensive and frequently changing federal, state and local laws and 

regulations relating to the protection of the environment. These laws, their underlying regulatory 
requirements and their enforcement, some of which are described below, impact, or may impact, our 
existing and proposed business operations by imposing: 

  restrictions on our existing and proposed business operations and/or the need to install 

 
 

enhanced or additional controls; 
the need to obtain and comply with permits and authorizations; 
liability for exceeding applicable permit limits or legal requirements, in certain cases for 
the remediation of contaminated soil and groundwater at our facilities, contiguous and 
adjacent properties and other properties owned and/or operated by third parties; and 

  specifications for the ethanol we market and produce. 

In addition, some of the governmental regulations to which we are subject are helpful to our 
ethanol marketing and production business. The ethanol fuel industry is greatly dependent upon tax 
policies and environmental regulations that favor the use of ethanol in motor fuel blends in North 
America. Some of the governmental regulations applicable to our ethanol marketing and production 
business are briefly described below. 

Federal Excise Tax Exemption 

Ethanol blends have been either wholly or partially exempt from the federal excise tax on 
gasoline since 1978. The exemption has ranged from $0.04 to $0.06 per gallon of gasoline during that 25-
year period. The current federal excise tax on gasoline is $0.184 per gallon, and is paid at the terminal by 
refiners and marketers. If the fuel is blended with ethanol, the blender may claim a $0.45 per gallon tax 
credit for each gallon of ethanol used in the mixture. The federal excise tax exemption was revised and its 
expiration date was extended for the sixth time since its inception as part of the American Jobs Creation 
Act of 2004. The new expiration date of the federal excise tax exemption is December 31, 2010. We 
believe that it is highly likely that this tax incentive will be extended beyond 2010 if Congress deems it 
necessary for the continued growth and prosperity of the ethanol industry. 

Clean Air Act Amendments of 1990 

In November 1990, a comprehensive amendment to the Clean Air Act of 1977 established a 

series of requirements and restrictions for gasoline content designed to reduce air pollution in identified 
problem areas of the United States. The two principal components affecting motor fuel content are the 
oxygenated fuels program, which is administered by states under federal guidelines, and a federally 
supervised reformulated gasoline, or RFG, program.  

Oxygenated Fuels Program 

Federal law requires the sale of oxygenated fuels in certain carbon monoxide non-attainment 

MSAs during at least four winter months, typically November through February. Any additional MSAs 
not in compliance for a period of two consecutive years in subsequent years may also be included in the 

-11- 

 
program. The Environmental Protection Agency, or EPA, Administrator is afforded flexibility in 
requiring a shorter or longer period of use depending upon available supplies of oxygenated fuels or the 
level of non-attainment. This law currently affects the Los Angeles area, where over 150 million gallons 
of ethanol are blended with gasoline each winter. 

Reformulated Gasoline Program 

The Clean Air Act Amendments of 1990 established special standards effective January 1, 1995 
for the most polluted ozone non-attainment areas: Los Angeles Area, Baltimore, Chicago Area, Houston 
Area, Milwaukee Area, New York City Area, Hartford, Philadelphia Area and San Diego, with provisions 
to add other areas in the future if conditions warrant. California’s San Joaquin Valley, the location of both 
of our Madera and Stockton facilities, was added in 2002. At the outset of the RFG program there were a 
total of 96 MSAs not in compliance with clean air standards for ozone, which represents approximately 
60% of the national market. 

The RFG program also includes a provision that allows individual states to ―opt into‖ the federal 

program by request of the governor, to adopt standards promulgated by California that are stricter than 
federal standards, or to offer alternative programs designed to reduce ozone levels. Nearly the entire 
Northeast and middle Atlantic areas from Washington, D.C. to Boston not under the federal mandate have 
―opted into‖ the federal standards. 

These state mandates in recent years have created a variety of gasoline grades to meet different 
regional environmental requirements. The RFG program accounts for about 30% of nationwide gasoline 
consumption. California refiners blend a minimum of 2.0% oxygen by weight, which is the equivalent of 
5.7% ethanol in every gallon of gasoline, or roughly 1.0 billion gallons of ethanol per year in California 
alone. 

National Energy Legislation 

In addition, the Energy Independence and Security Act of 2007, which was signed into law in 

December 2007, significantly increased the prior national RFS. The new national RFS significantly 
increases the mandated use of renewable fuels to 11.1 billion gallons in 2009 and 13.0 billion gallons in 
2010, and rises incrementally and peaks at 36.0 billion gallons by 2022. The new national RFS mandates 
include renewable fuel increases, with corn-based or ―conventional‖ ethanol to 10.5 billion gallons in 
2009 and 12.0 billion gallons in 2010, reaching a peak of 15.0 billion gallons by 2015. Beginning in 2016, 
increases in the new national RFS targets must be met with advanced biofuels, defined as cellulosic 
ethanol and other biofuels derived from feedstock other than corn starch.  

State Energy Legislation and Regulations 

State energy legislation and regulations may affect the demand for ethanol. California recently 

passed legislation regulating the total emissions of CO2 from vehicles and other sources. In 2006, the 
State of Washington passed a statewide renewable fuel standard effective December 1, 2008. We believe 
other states may also enact their own renewable fuel standards.  

In January 2007, California’s Governor signed an executive order directing the California Air 
Resource Board to implement a Low Carbon Fuels Standard for transportation fuels. The Governor’s 
office estimates that the standard will have the effect of increasing current renewable fuels use in 
California by three to five times by 2020. 

The State of Oregon implemented a state-wide renewable fuels standard effective January 2008. 

This standard requires a 10% ethanol blend in every gallon of gasoline and is expected to cause the use of 
approximately 160 million gallons of ethanol per year in Oregon. 

-12- 

 
Additional Environmental Regulations 

In addition to the governmental regulations applicable to the ethanol marketing and production 

industries described above, our business is subject to additional federal, state and local environmental 
regulations, including regulations established by the EPA, the Regional Water Quality Control Board, the 
San Joaquin Valley Air Pollution Control District and the California Air Resources Board. We cannot 
predict the manner or extent to which these regulations will harm or help our business or the ethanol 
production and marketing industry in general.  

Employees  

As of March 26, 2009, we employed approximately 150 persons on a full-time basis, including 
through our subsidiaries. We believe that our employees are highly-skilled, and our success will depend 
in part upon our ability to retain our employees and attract new qualified employees who are in great 
demand. We have never had a work stoppage or strike, and no employees are presently represented by a 
labor union or covered by a collective bargaining agreement. We consider our relations with our 
employees to be good. 

Item 1A.  Risk Factors. 

Risks Related to our Business 

There is substantial doubt as to our ability to continue as a going concern. We need additional 
financing or capital which may be unavailable or costly.  

As a result of ethanol industry conditions that have negatively affected our business, we do not 

currently have sufficient liquidity to meet our anticipated working capital, debt service and other liquidity 
needs in the very near-term. We believe that we have sufficient working capital to continue operations 
only until approximately April 30, 2009 at the latest unless we successfully restructure our debt, 
experience a significant improvement in margins and obtain other sources of liquidity. In addition, 
although various secured creditors are presently forbearing through April 30, 2009 under outstanding 
forbearance agreements from exercising their rights, once those forbearance periods expire or in the event 
of additional defaults, we will be in default to those secured creditors who collectively hold security 
interests in substantially all of our assets. As a result, our 2008 financial statements include an 
explanatory paragraph by our independent registered public accounting firm describing the substantial 
doubt as to our ability to continue as a going concern. 

As of March 26, 2009, we owed approximately $246.5 million in term loans and lines of credit 

associated with the construction and operation of our ethanol plants and approximately $5.3 million under 
our revolving credit facility. As of that date, we had only $4.0 million in cash and $4.7 million of 
additional borrowing availability under our revolving credit facility. As we continue to reduce the number 
of gallons of ethanol we sell and hold in inventory, working capital available to support borrowings under 
our revolving credit facility will reduce proportionately.  

We do not expect to have sufficient liquidity to meet anticipated working capital, debt service and 

other liquidity needs beyond April 30, 2009 at the latest unless we successfully restructure our debt, 
experience a significant improvement in margins and obtain other sources of liquidity. Based on the 
current spread between corn and ethanol prices, the industry is operating at or near break-even cash 
margins. The current spread between ethanol and corn prices cannot support the long-term viability of the 
U.S. ethanol industry in general or us in particular.    

Although we are actively pursuing a number of alternatives, including seeking to restructure our 

debt and seeking to raise additional debt or equity financing, or both, there can be no assurance that we 

-13- 

 
will be successful. If we cannot restructure our debt and obtain sufficient liquidity in the very near term, 
we may need to seek to protection under the U.S. Bankruptcy Code.  

If we seek protection under the U.S. Bankruptcy Code, all of our outstanding shares of capital 
stock could be cancelled and holders of our capital stock may not be entitled to any payment in 
respect of their shares.  

If we seek protection under the U.S. Bankruptcy Code it is possible that all of our outstanding 

shares of capital stock could be cancelled and holders of capital stock may not be entitled to any payment 
in respect of their shares. It is also possible that our obligations to our creditors may be satisfied by the 
issuance of shares of capital stock in satisfaction of their claims. The value of any capital stock so issued 
may be less than the face value of our obligations to those creditors, and the price of any such capital 
stock may be volatile. In addition, in the event of a bankruptcy filing, our common stock will be 
suspended from trading on and delisted from NASDAQ. Accordingly, trading in our common stock may 
be limited, and our stockholders may not be able to resell their securities for their purchase price or at all.  

We are seeking additional financing and may be unable to obtain this financing on a timely 
basis, in sufficient amounts, on terms acceptable to us or at all. Any financing we are able to 
obtain may be available only on burdensome terms that may cause significant dilution to our 
stockholders and impose onerous financial restrictions on our business. 

We are seeking substantial additional financing. Deteriorating global economic and debt and 

equity market conditions may cause prolonged declines in lender and investor confidence in and 
accessibility to capital markets. Future financing may not be available on a timely basis, in sufficient 
amounts, on terms acceptable to us or at all. Any equity financing may cause significant dilution to 
existing stockholders. Any debt financing or other financing of securities senior to our common stock will 
likely include financial and other covenants that will restrict our flexibility. At a minimum, we would 
expect these covenants to include restrictions on our ability to pay dividends on our common stock. Any 
failure to comply with these covenants could have a material adverse effect on our business, prospects, 
financial condition and results of operations because we could lose any then-existing sources of financing 
and our ability to secure new financing may be impaired. In addition, any prospective debt or equity 
financing transaction will be subject to the negotiation of definitive documents and any closing under 
those documents will be subject to the satisfaction of numerous conditions, many of which could be 
beyond our control. We may be unable to obtain additional financing from one or more lenders or equity 
investors, or if funding is available, it may be available only on burdensome terms that may cause 
significant dilution to our stockholders and impose onerous financial restrictions on our business.  

We have incurred significant losses and negative operating cash flow in the past and we will 
likely incur significant losses and negative operating cash flow in the foreseeable future. 
Continued losses and negative operating cash flow will hamper our operations and prevent us 
from expanding our business.  

We have incurred significant losses and negative operating cash flow in the past. For the years 

ended December 31, 2008, 2007 and 2006, we incurred net losses of approximately $146.5 million, $14.4 
million and $142,000, respectively. For the years ended December 31, 2008 and 2006, we incurred 
negative operating cash flow of approximately $55.2 million and $8.1 million, respectively. We will 
likely incur significant losses and negative operating cash flow in the foreseeable future. We expect to 
rely on cash on hand, cash, if any, generated from our operations and cash, if any, generated from our 
future financing activities to fund all of the cash requirements of our business. Continued losses and 
negative operating cash flow will hamper our operations and prevent us from expanding our business. 
Continued losses and negative operating cash flow are also likely to make our capital raising needs more 
acute while limiting our ability to raise additional financing on satisfactory terms.  

-14- 

 
We recognized impairment charges in 2008 and could recognize additional impairment charges 
in the future. 

During  2008,  we  recognized  an  impairment  charge  of  our  goodwill  in  the  amount  of  $87.0 
million  and  an  impairment  charge  on  our  construction  project  in  the  Imperial  Valley  near  Calipatria, 
California,  or  the  Imperial  Project,  in  the  amount  of  $40.9  million.  As  of  December  31,  2008,  we 
performed  our  forecast  of expected  future  cash  flows  of  our  facilities  over  their  estimated  useful  lives. 
Such  forecasts  of  expected  future  cash  flows  are  heavily  dependent  upon  management’s  estimates  of 
future  market  prices  for ethanol,  our  primary  product,  and  corn,  our  primary  production  input.  As  both 
ethanol and corn costs have fluctuated significantly in the past year, these estimates are highly subjective 
and are management’s best estimates at this time.  

If  average  prices  for  ethanol  and  corn  during  2008  were  used  in  our  forecast  rather  than 
management’s  estimate  of  future  market  prices,  the  projections  would  have  resulted  in  estimated 
undiscounted cash flows below carrying values which would require us to compute their fair values. If we 
are  required  to  compute  the  fair  value  in  the  future,  we  may  use  the  work  of  a  qualified  valuation 
specialist who would assist us in examining replacement costs, recent transactions between third parties 
and  cash  flow  that  can  be  generated  from  operations.  Given  the  recent  completion  of  the  facilities, 
replacement cost would likely approximate the carrying value of the facilities. However, there have been 
recent  transactions  between  independent  parties  to  purchase  plants  at  prices  substantially  below  the 
carrying  value  of  the  facilities.  Some  of  the  facilities  have  been  in  bankruptcy  and  may  not  be 
representative of transactions outside of bankruptcy. Given these circumstances, should management be 
required  to  adjust  the  carrying  value  of  the  facilities  to  fair  value  at  some  future  point  in  time,  the 
adjustment could be significant and could significantly impact our financial position, results of operations 
and possibly any existing financial debt covenants.  

If we are unable to attract and retain key personnel, our ability to operate effectively may be 
impaired. 

Our ability to operate our business and implement strategies depends, in part, on the efforts of our 

executive officers and other key employees.  We have made certain reductions in staffing which may 
have had the effect of creating an uncertain employment environment, which may lead key employees to 
seek alternative employment. In addition, our acute financial distress may cause key employees to seek 
alternative employment. Our future success will depend on, among other factors, our ability to attract and 
retain our current key personnel and qualified future key personnel, particularly executive 
management.  Failure to attract or retain qualified key personnel, could have a material adverse effect on 
our business and results of operations. 

Even if we are able to restructure our indebtedness and raise additional capital in the very near 
term, various factors could result in inadequate working capital to fully fund our operations.  

If ethanol production margins remain at or deteriorate from current levels, if our capital 
requirements or cash flows otherwise vary materially and adversely from our current projections, or if 
other adverse unforeseen circumstances occur, our working capital may be inadequate to fully fund our 
operations even if we are able to restructure our indebtedness and raise additional capital in the very near 
term, which may have a material adverse effect on our results of operations, liquidity and cash flows and 
may restrict our growth and hinder our ability to compete.   

-15- 

 
The crisis in the financial markets, considerable volatility in the commodities markets and 
sustained weakening of the economy could further significantly impact our business and 
financial condition and may limit our ability to raise additional capital.  

As widely reported, financial markets in the United States and the rest of the world are 

experiencing extreme disruption, including, among other things, extreme volatility in securities and 
commodities prices, as well as severely diminished liquidity and credit availability. As a result, we 
believe that our ability to access capital markets and raise funds required for our operations is severely 
restricted at a time when we need to do so, which is having a material adverse effect on our ability to meet 
our current and future funding requirements and on our ability to react to changing economic and business 
conditions. Current economic and market conditions, and particularly, the significant decline in the price 
of crude oil, has resulted in reduced demand for our products. We are not able to predict the duration or 
severity of the current disruption in financial markets, fluctuations in the price of crude oil or other 
adverse economic conditions in the United States. However, if economic conditions continue to worsen, it 
is likely that these factors would have a further adverse effect on our results of operations and future 
prospects.  

Increased  ethanol  production may  cause  a  decline in  ethanol  prices  or  prevent  ethanol  prices 
from rising, and may have other negative effects, adversely impacting our results of operations, 
cash flows and financial condition. 

We believe that the most significant factor influencing the price of ethanol has been the 

substantial increase in ethanol production in recent years. Domestic ethanol production capacity has 
increased steadily from an annualized rate of 1.7 billion gallons per year in January 1999 to 9.2 billion 
gallons in 2008 according to the RFA. In addition, we believe that a significant amount of ethanol 
production capacity—approximately 1.0 billion gallons per year—is currently under construction. This 
production capacity is being added to address anticipated increases in demand, including demand from 
increased volume requirements under the Energy Independence and Security Act of 2007. See 
―Business—Governmental Regulation.‖ However, increases in the demand for ethanol may not be 
commensurate with increases in the supply of ethanol, thus leading to lower ethanol prices. Demand for 
ethanol could be impaired due to a number of factors, including regulatory developments and reduced 
United States gasoline consumption. Reduced gasoline consumption has occurred in the past, and could 
occur in the future, as a result of increased gasoline or oil prices. Increased ethanol production could also 
have other adverse effects. For example, increased ethanol production could lead to increased supplies of 
co-products generated from ethanol production, such as WDG. Those increased supplies could lead to 
lower prices for those co-products. Also, increased ethanol production could result in increased demand 
for corn. Increased demand for corn could cause higher corn prices, resulting in higher ethanol production 
costs and lower profit margins. Accordingly, increased ethanol production may cause a decline in ethanol 
prices or prevent ethanol prices from rising, and may have other negative effects, adversely impacting our 
results of operations, cash flows and financial condition.  

The raw materials and energy necessary to produce ethanol may be unavailable or may 
increase in price, adversely affecting our business, results of operations and financial condition. 

The principal raw material we use to produce ethanol and its co-products is corn. Changes in the 
price of corn can significantly affect our business. In general, and as we have experienced in 2008, rising 
corn prices result in lower profit margins and, therefore, represent unfavorable market conditions. This is 
especially true since market conditions generally do not allow us to pass along increased corn prices to 
our customers because the price of ethanol is primarily determined by other factors, such as the supply of 
ethanol and the price of oil and gasoline. At certain levels, corn prices may even make ethanol production 
uneconomical depending on the prevailing price of ethanol. 

-16- 

 
The price of corn is influenced by general economic, market and regulatory factors. These factors 

include weather conditions, crop conditions and yields, farmer planting decisions, government policies 
and subsidies with respect to agriculture and international trade and global supply and demand. The 
significance and relative impact of these factors on the price of corn is difficult to predict. Any event that 
tends to negatively impact the supply of corn will tend to increase prices and potentially harm our 
business. Average corn prices as measured by the Chicago Board of Trade increased 41% from 2007 to 
2008. The United States Department of Agriculture’s March 2009 World Agriculture Supply and Demand 
Estimates projected that corn bought by ethanol plants in the U.S. will represent approximately 31% of 
the 2008/2009 crop year’s total corn supply, up from 22% in the prior crop year. Additional increases in 
ethanol production could further boost demand for corn and result in further increases in corn prices.  

Our business also depends on the continuing availability of rail, road, port, storage and 
distribution infrastructure. In particular, due to limited storage capacity at our production facilities and 
other considerations related to production efficiencies, we depend on just-in-time delivery of corn. The 
production of ethanol also requires a significant and uninterrupted supply of other raw materials and 
energy, primarily water, electricity and natural gas. The prices of electricity and natural gas have 
fluctuated significantly in the past and may fluctuate significantly in the future. Local water, electricity 
and gas utilities may not be able to reliably supply the water, electricity and natural gas that our facilities 
will need or may not be able to supply those resources on acceptable terms. Any disruptions in the ethanol 
production infrastructure network, whether caused by labor difficulties, earthquakes, storms, other natural 
disasters or human error or malfeasance or other reasons, could prevent timely deliveries of corn or other 
raw materials and energy and may require us to halt production which could have a material adverse 
effect on our business, results of operations and financial condition. 

We engage in hedging transactions and other risk mitigation strategies that could harm our 
results of operations. 

In an attempt to partially offset the effects of volatility of ethanol prices and corn and natural gas 
costs, we often enter into contracts to supply a portion of our ethanol production or purchase a portion of 
our corn or natural gas requirements on a forward basis. In addition, we engage in other hedging 
transactions involving exchange-traded futures contracts for corn, natural gas and unleaded gasoline from 
time to time. The financial statement impact of these activities is dependent upon, among other things, the 
prices involved and our ability to sell sufficient products to use all of the corn and natural gas for which 
we have futures contracts. We also engage in hedging transactions involving interest rate swaps related to 
our debt financing activities, the financial statement impact of which is dependent upon, among other 
things, fluctuations in prevailing interest rates. Hedging arrangements also expose us to the risk of 
financial loss in situations where the other party to the hedging contract defaults on its contract or, in the 
case of exchange-traded contracts, where there is a change in the expected differential between the 
underlying price in the hedging agreement and the actual prices paid or received by us. Hedging activities 
can themselves result in losses when a position is purchased in a declining market or a position is sold in 
a rising market. A hedge position for a physical commodity is often settled in the same time frame as the 
physical commodity is either purchased or sold. Certain hedging losses may be offset by a decreased cash 
price for corn and natural gas and an increased cash price for ethanol. We also vary the amount of 
hedging or other risk mitigation strategies we undertake, and from time to time we may choose not to 
engage in hedging transactions at all. As a result, our results of operations and financial position may be 
adversely affected by fluctuations in the price of corn, natural gas, ethanol, unleaded gasoline and 
prevailing interest rates. 

The market price of ethanol is volatile and subject to large fluctuations, which may cause our 
profitability or losses to fluctuate significantly. 

The market price of ethanol is volatile and subject to large fluctuations. The market price of 

ethanol is dependent upon many factors, including the supply of ethanol and the price of gasoline, which 

-17- 

 
is in turn dependent upon the price of petroleum which is highly volatile and difficult to forecast. For 
example, our average sales price of ethanol in 2008 increased by 5%, in 2007 declined by 6% and in 2006 
increased by 37% from the prior year’s average sales price per gallon. Fluctuations in the market price of 
ethanol may cause our profitability or losses to fluctuate significantly.  

We have identified certain material weaknesses in our internal control over financial reporting 
in the past and cannot assure you that material weaknesses will not be identified in the future. 
If our internal control over financial reporting or disclosure controls and procedures are not 
effective, there may be errors in our financial statements that could require a restatement or 
our filings may not be timely and investors may lose confidence in our reported financial 
information, which could lead to a decline in our stock price.  

Section 404 of the Sarbanes-Oxley Act of 2002 requires us to evaluate the effectiveness of our 
internal control over financial reporting as of the end of each year, and to include a management report 
assessing the effectiveness of our internal control over financial reporting in each Annual Report on Form 
10-K. Section 404 also requires our independent registered public accounting firm to attest to, and report 
on, management’s assessment of our internal control over financial reporting. See ―Controls and 
Procedures.‖ 

Our management, including our Chief Executive Officer and Chief Financial Officer, does not 

expect that our internal control over financial reporting will prevent all errors and all fraud. A control 
system, no matter how well designed and operated, can provide only reasonable, not absolute, assurance 
that the control system’s objectives will be met. Further, the design of a control system must reflect the 
fact that there are resource constraints, and the benefits of controls must be considered relative to their 
costs. Controls can be circumvented by the individual acts of some persons, by collusion of two or more 
people, or by management override of the controls. Over time, controls may become inadequate because 
changes in conditions or deterioration in the degree of compliance with policies or procedures may occur. 
Because of the inherent limitations of a cost-effective control system, misstatements due to error or fraud 
may occur and not be detected.  

We identified material weaknesses in our internal control over financial reporting for the year 

ended December 31, 2007 and we cannot assure you that significant deficiencies or material weaknesses 
in our internal control over financial reporting will not be identified in the future. Any failure to maintain 
or implement required new or improved controls, or any difficulties we encounter in their 
implementation, could result in significant deficiencies or material weaknesses, cause us to fail to timely 
meet our periodic reporting obligations, or result in material misstatements in our financial statements. 
Any such failure could also adversely affect the results of periodic management evaluations and annual 
auditor attestation reports regarding disclosure controls and the effectiveness of our internal control over 
financial reporting required under Section 404 of the Sarbanes-Oxley Act of 2002 and the rules 
promulgated thereunder. The existence of a material weakness could result in errors in our financial 
statements that could result in a restatement of financial statements, cause us to fail to timely meet our 
reporting obligations and cause investors to lose confidence in our reported financial information, leading 
to a decline in our stock price. 

Operational difficulties at our production facilities could negatively impact our sales volumes 
and could cause us to incur substantial losses. 

Our operations are subject to labor disruptions, unscheduled downtimes and other operational 

hazards inherent in our industry, such as equipment failures, fires, explosions, abnormal pressures, 
blowouts, pipeline ruptures, transportation accidents and natural disasters. Some of these operational 
hazards may cause personal injury or loss of life, severe damage to or destruction of property and 
equipment or environmental damage, and may result in suspension of operations and the imposition of 
civil or criminal penalties. Our insurance may not be adequate to fully cover the potential operational 

-18- 

 
hazards described above or we may not be able to renew this insurance on commercially reasonable terms 
or at all. 

Moreover, our plants may not operate as planned or expected. All of our plants are designed to 
operate at or above a certain production capacity. The operation of our plants is and will be, however, 
subject to various uncertainties. As a result, our plants may not produce ethanol and its co-products at the 
levels we expect. In the event any of our plants do not run at their expected capacity levels, our business, 
results of operations and financial condition may be materially and adversely affected. 

The United States ethanol industry is highly dependent upon a myriad of federal and state 
legislation and regulation and any changes in such legislation or regulation could have a 
material adverse effect on our results of operations and financial condition. 

The elimination or reduction of federal excise tax incentives could have a material adverse effect 
on our results of operations and our financial condition. 

The amount of ethanol production capacity in the U.S. exceeds the mandated usage of renewable 

biofuels. Ethanol consumption above mandated amounts is primarily based upon the economic benefit 
derived by blenders, including benefits received from federal excise tax incentives. Therefore, the 
production of ethanol is made significantly more competitive by federal tax incentives. The federal excise 
tax incentive program, which is scheduled to expire on December 31, 2010, allows gasoline distributors 
who blend ethanol with gasoline to receive a federal excise tax rate reduction for each blended gallon they 
sell regardless of the blend rate. The current federal excise tax on gasoline is $0.184 per gallon, and is 
paid at the terminal by refiners and marketers. If the fuel is blended with ethanol, the blender may claim a 
$0.45 per gallon tax credit for each gallon of ethanol used in the mixture. The 2008 Farm Bill enacted into 
law reduced federal excise tax incentives from $0.51 per gallon in 2008 to $0.45 per gallon in 2009. The 
federal excise tax incentive program may not be renewed prior to its expiration in 2010, or if renewed, it 
may be renewed on terms significantly less favorable than current tax incentives. The elimination or 
significant reduction in the federal excise tax incentive program could reduce discretionary blending and 
have a material adverse effect on our results of operations and our financial condition.  

Various studies have criticized the efficiency of ethanol in general, and corn-based ethanol in 
particular, which could lead to the reduction or repeal of incentives and tariffs that promote the 
use and domestic production of ethanol or otherwise negatively impact public perception and 
acceptance of ethanol as an alternative fuel. 

Although many trade groups, academics and governmental agencies have supported ethanol as a 

fuel additive that promotes a cleaner environment, others have criticized ethanol production as consuming 
considerably more energy and emitting more greenhouse gases than other biofuels and as potentially 
depleting water resources. Other studies have suggested that corn-based ethanol is less efficient than 
ethanol produced from switchgrass or wheat grain and that it negatively impacts consumers by causing 
higher prices for dairy, meat and other foodstuffs from livestock that consume corn. If these views gain 
acceptance, support for existing measures promoting the use and domestic production of corn-based 
ethanol could decline, leading to a reduction or repeal of these measures. These views could also 
negatively impact public perception of the ethanol industry and acceptance of ethanol as an alternative 
fuel. 

Waivers or repeal of the national RFS minimum levels of renewable fuels included in gasoline 
could have a material adverse affect on our results of operations. 

Shortly after passage of the Energy Independence and Security Act of 2007, which increased the 

minimum mandated required usage of ethanol, a Congressional sub-committee held hearings on the 
potential impact of the new national RFS on commodity prices. While no action was taken by the sub-

-19- 

 
committee towards repeal of the new national RFS, any attempt by Congress to re-visit, repeal or grant 
waivers of the new national RFS could adversely affect demand for ethanol and could have a material 
adverse effect on our results of operations and financial condition. 

While the Energy Independence and Security Act of 2007 imposes the national RFS, it does not 
mandate only the use of ethanol. 

The Energy Independence and Security Act of 2007 imposes the national RFS, but does not 

mandate only the use of ethanol. While the RFA expects that ethanol should account for the largest share 
of renewable fuels produced and consumed under the national RFS, the national RFS is not limited to 
ethanol and also includes biodiesel and any other liquid fuel produced from biomass or biogas.  

The ethanol production and marketing industry is extremely competitive. Many of our 
significant competitors have greater production and financial resources than we do and one or 
more of these competitors could use their greater resources to gain market share at our 
expense. In addition, certain of our suppliers may circumvent our marketing services, causing 
our sales and profitability to decline. 

The ethanol production and marketing industry is extremely competitive. Many of our significant 

competitors in the ethanol production and marketing industry, such as ADM, Cargill, Inc., and other 
competitors have substantially greater production and/or financial resources than we do. As a result, our 
competitors may be able to compete more aggressively and sustain that competition over a longer period 
of time than we could. Successful competition will require a continued high level of investment in 
marketing and customer service and support. Our lack of resources relative to many of our significant 
competitors may cause us to fail to anticipate or respond adequately to new developments and other 
competitive pressures. This failure could reduce our competitiveness and cause a decline in our market 
share, sales and profitability. Even if sufficient funds are available, we may not be able to make the 
modifications and improvements necessary to compete successfully. 

We also face increasing competition from international suppliers. Currently, international 

suppliers produce ethanol primarily from sugar cane and have cost structures that are generally 
substantially lower than ours. Any increase in domestic or foreign competition could cause us to reduce 
our prices and take other steps to compete effectively, which could adversely affect our results of 
operations and financial condition. 

In addition, some of our suppliers are potential competitors and, especially if the price of ethanol 

reaches historically high levels, they may seek to capture additional profits by circumventing our 
marketing services in favor of selling directly to our customers. If one or more of our major suppliers, or 
numerous smaller suppliers, circumvent our marketing services, our sales and profitability may decline.  

The high concentration of our sales within the ethanol marketing and production industry 
could result in a significant reduction in sales and negatively affect our profitability if demand 
for ethanol declines.  

We expect to be completely focused on the marketing and production of ethanol and its co-

products for the foreseeable future. We may be unable to shift our business focus away from the 
marketing and production of ethanol to other renewable fuels or competing products. Accordingly, an 
industry shift away from ethanol or the emergence of new competing products may reduce the demand for 
ethanol. A downturn in the demand for ethanol would likely materially and adversely affect our sales and 
profitability. 

-20- 

 
We produce and sell our own ethanol but also depend on a small number of third-party 
suppliers for a significant portion of the ethanol that we sell. If any of these suppliers does not 
continue to supply us with ethanol in adequate amounts, we may be unable to satisfy the 
demands of our customers and our sales, profitability and relationships with our customers will 
be adversely affected. 

We produce and sell our own ethanol but also depend on a small number of third-party suppliers 

for a significant portion of the ethanol that we sell. We expect to continue to depend for the foreseeable 
future upon a small number of third-party suppliers for a significant portion of the ethanol that we sell. 
Our third-party suppliers are primarily located in the Midwestern United States. The delivery of ethanol 
from these suppliers is therefore subject to delays resulting from inclement weather and other conditions. 
If any of these suppliers is unable or declines for any reason to continue to supply us with ethanol in 
adequate amounts, we may be unable to replace that supplier and source other supplies of ethanol in a 
timely manner, or at all, to satisfy the demands of our customers. If this occurs, our sales, profitability and 
our relationships with our customers will be adversely affected. 

We may be adversely affected by environmental, health and safety laws, regulations and 
liabilities. 

We are subject to various federal, state and local environmental laws and regulations, including 

those relating to the discharge of materials into the air, water and ground, the generation, storage, 
handling, use, transportation and disposal of hazardous materials, and the health and safety of our 
employees. In addition, some of these laws and regulations require our facilities to operate under permits 
that are subject to renewal or modification. These laws, regulations and permits can often require 
expensive pollution control equipment or operational changes to limit actual or potential impacts to the 
environment. A violation of these laws and regulations or permit conditions can result in substantial fines, 
natural resource damages, criminal sanctions, permit revocations and/or facility shutdowns. In addition, 
we have made, and expect to make, significant capital expenditures on an ongoing basis to comply with 
increasingly stringent environmental laws, regulations and permits.  

We may be liable for the investigation and cleanup of environmental contamination at each of the 
properties that we own or operate and at off-site locations where we arrange for the disposal of hazardous 
substances. If these substances have been or are disposed of or released at sites that undergo investigation 
and/or remediation by regulatory agencies, we may be responsible under the Comprehensive 
Environmental Response, Compensation and Liability Act of 1980, or other environmental laws for all or 
part of the costs of investigation and/or remediation, and for damages to natural resources. We may also 
be subject to related claims by private parties alleging property damage and personal injury due to 
exposure to hazardous or other materials at or from those properties. Some of these matters may require 
us to expend significant amounts for investigation, cleanup or other costs.  

In addition, new laws, new interpretations of existing laws, increased governmental enforcement 

of environmental laws or other developments could require us to make significant additional 
expenditures. Continued government and public emphasis on environmental issues can be expected to 
result in increased future investments for environmental controls at our production facilities. Present and 
future environmental laws and regulations (and interpretations thereof) applicable to our operations, more 
vigorous enforcement policies and discovery of currently unknown conditions may require substantial 
expenditures that could have a material adverse effect on our results of operations and financial condition.  

The hazards and risks associated with producing and transporting our products (such as fires, 
natural disasters, explosions and abnormal pressures and blowouts) may also result in personal injury 
claims or damage to property and third parties. As protection against operating hazards, we maintain 
insurance coverage against some, but not all, potential losses. However, we could sustain losses for 
uninsurable or uninsured risks, or in amounts in excess of existing insurance coverage. Events that result 

-21- 

 
in significant personal injury or damage to our property or third parties or other losses that are not fully 
covered by insurance could have a material adverse effect on our results of operations and financial 
condition.  

We depend on a small number of customers for the majority of our sales. A reduction in 
business from any of these customers could cause a significant decline in our overall sales and 
profitability. 

The majority of our sales are generated from a small number of customers. During each of 2007 
and 2008, sales to our two largest customers, each of whom accounted for 10% or more of total net sales, 
represented an aggregate of approximately 32% of our total net sales for those years. We expect that we 
will continue to depend for the foreseeable future upon a small number of customers for a significant 
portion of our sales. Our agreements with these customers generally do not require them to purchase any 
specified amount of ethanol or dollar amount of sales or to make any purchases whatsoever. Therefore, in 
any future period, our sales generated from these customers, individually or in the aggregate, may not 
equal or exceed historical levels. If sales to any of these customers cease or decline, we may be unable to 
replace these sales with sales to either existing or new customers in a timely manner, or at all. A cessation 
or reduction of sales to one or more of these customers could cause a significant decline in our overall 
sales and profitability. 

Our lack of long-term ethanol orders and commitments by our customers could lead to a rapid 
decline in our sales and profitability. 

We cannot rely on long-term ethanol orders or commitments by our customers for protection 

from the negative financial effects of a decline in the demand for ethanol or a decline in the demand for 
our marketing services. The limited certainty of ethanol orders can make it difficult for us to forecast our 
sales and allocate our resources in a manner consistent with our actual sales. Moreover, our expense 
levels are based in part on our expectations of future sales and, if our expectations regarding future sales 
are inaccurate, we may be unable to reduce costs in a timely manner to adjust for sales shortfalls. 
Furthermore, because we depend on a small number of customers for a significant portion of our sales, 
the magnitude of the ramifications of these risks is greater than if our sales were less concentrated. As a 
result of our lack of long-term ethanol orders and commitments, we may experience a rapid decline in our 
sales and profitability. 

We are a minority member of Front Range with limited control over that entity’s business 
decisions. We are therefore dependent upon the business judgment and conduct of the manager 
and majority member of that entity. As a result, our interests may not be as well served as if we 
were in control of Front Range, which could adversely affect its contribution to our results of 
operations and our business prospects related to that entity. 

Front Range operates an ethanol production facility located in Windsor, Colorado. We own 

approximately 42% of Front Range, which represents a minority interest in that entity. The manager and 
majority member of Front Range owns approximately 54% of that entity and has control of that entity’s 
business decisions, including those related to day-to-day operations. The manager and majority member 
of Front Range has the right to set the manager’s compensation, determine cash distributions, decide 
whether or not to expand the ethanol production facility and make most other business decisions on behalf 
of that entity. We are therefore largely dependent upon the business judgment and conduct of the manager 
and majority member of Front Range. As a result, our interests may not be as well served as if we were in 
control of Front Range. Accordingly, the contribution by Front Range to our results of operations and our 
business prospects related to that entity may be adversely affected by our lack of control over that entity. 

-22- 

 
Risks Related to our Common Stock 

Our  common  stock  may  be  involuntarily  delisted  from  trading  on  NASDAQ  if  we  fail  to 
maintain  a  minimum  closing  bid  price  of  $1.00  per  share  for  any  consecutive  30  trading  day 
period. A notification of delisting or a delisting of our common stock would reduce the liquidity 
of our common stock and inhibit or preclude our ability to raise additional financing and may 
also materially and adversely impact our credit terms with our vendors. 

NASDAQ’s quantitative listing standards require, among other things, that listed companies 

maintain a minimum closing bid price of $1.00 per share. However, NASDAQ has recently suspended its 
minimum closing bid price threshold through July 19, 2009. If, upon reinstatement of the minimum 
closing bid price threshold, we fail to satisfy this threshold for any consecutive 30 trading day period, our 
common stock may be involuntarily delisted from trading on NASDAQ once the applicable grace period 
expires. Our stock price has remained below $1.00 since early November 2008. Given the increased 
market volatility arising in part from economic turmoil resulting from the ongoing credit crisis, as well as 
a challenging environment in the biofuels industry, the closing bid price of our common stock could be 
below $1.00 per share for a consecutive 30 trading day period after the NASDAQ reinstates its rules. A 
notification of delisting or delisting of our common stock would reduce the liquidity of our common stock 
and inhibit or preclude our ability to raise additional financing and may also materially and adversely 
impact our credit terms with our vendors. 

As a result of our issuance of shares of Series B Preferred Stock, our common stockholders may 
experience numerous negative effects and most of the rights of our common stockholders will be 
subordinate to the rights of the holders of our Series B Preferred Stock. 

As a result of our issuance of shares of Series B Preferred Stock, our common stockholders may 
experience numerous negative effects, including dilution from any dividends paid in preferred stock and 
certain antidilution adjustments. In addition, rights in favor of the holders of our Series B Preferred Stock 
include: seniority in liquidation and dividend preferences; substantial voting rights; numerous protective 
provisions; and preemptive rights. Also, our outstanding Series B Preferred Stock could have the effect of 
delaying, deferring and discouraging another party from acquiring control of Pacific Ethanol.   

Our stock price is highly volatile, which could result in substantial losses for investors 
purchasing shares of our common stock and in litigation against us. 

The market price of our common stock has fluctuated significantly in the past and may continue 

to fluctuate significantly in the future. The market price of our common stock may continue to fluctuate in 
response to one or more of the following factors, many of which are beyond our control: 

 

 
 
 
 

 
 
 
 
 
 

changing conditions in the ethanol and fuel markets as well as other commodity markets 
such as corn; 
the volume and timing of the receipt of orders for ethanol from major customers; 
competitive pricing pressures; 
our ability to produce, sell and deliver ethanol on a cost-effective and timely basis; 
the introduction and announcement of one or more new alternatives to ethanol by our 
competitors; 
changes in market valuations of similar companies; 
stock market price and volume fluctuations generally; 
our stock’s relative small public float; 
regulatory developments or increased enforcement; 
fluctuations in our quarterly or annual operating results; 
additions or departures of key personnel; 

-23- 

 
 
 

 

our inability to obtain construction, acquisition, capital equipment and/or working capital 
financing; and 
future sales of our common stock or other securities. 

Furthermore, we believe that the economic conditions in California and other Western states, as 
well as the United States as a whole, could have a negative impact on our results of operations. Demand 
for ethanol could also be adversely affected by a slow-down in overall demand for oxygenate and 
gasoline additive products. The levels of our ethanol production and purchases for resale will be based 
upon forecasted demand. Accordingly, any inaccuracy in forecasting anticipated revenues and expenses 
could adversely affect our business. The failure to receive anticipated orders or to complete delivery in 
any quarterly period could adversely affect our results of operations for that period. Quarterly results are 
not necessarily indicative of future performance for any particular period, and we may not experience 
revenue growth or profitability on a quarterly or an annual basis. 

The price at which you purchase shares of our common stock may not be indicative of the price 

that will prevail in the trading market. You may be unable to sell your shares of common stock at or 
above your purchase price, which may result in substantial losses to you and which may include the 
complete loss of your investment. In the past, securities class action litigation has often been brought 
against a company following periods of stock price volatility. We may be the target of similar litigation in 
the future. Securities litigation could result in substantial costs and divert management’s attention and our 
resources away from our business.  

Any of the risks described above could have a material adverse effect on our sales and 

profitability and the price of our common stock. 

Item 1B.  Unresolved Staff Comments. 

None. 

Item 2.  Properties. 

Our corporate headquarters, located in Sacramento, California, consists of a leased 10,000 square 

foot office expiring in 2010. We also rent an office in Portland, Oregon, consisting of 3,500 square feet, 
expiring in 2012.  

Our ethanol production facilities are located in Madera, California, at which a 137 acre facility is 

located, Boardman, Oregon, at which a 25 acre facility is located, Burley, Idaho, at which a 160 acre 
facility is located, Stockton, California, at which a 30 acre facility is located and Windsor, Colorado, at 
which a 40 acre facility is located. We are a minority owner of the entity that owns the Windsor, Colorado 
facility. Further, we have options to acquire sites for other potential ethanol production facilities that we 
may develop in the future. See ―Business—Production Facilities.‖ 

Item 3.  Legal Proceedings.  

We are subject to legal proceedings, claims and litigation arising in the ordinary course of 
business. While the amounts claimed may be substantial, the ultimate liability cannot presently be 
determined because of considerable uncertainties that exist. Therefore, it is possible that the outcome of 
those legal proceedings, claims and litigation could adversely affect our quarterly or annual operating 
results or cash flows when resolved in a future period. However, based on facts currently available, 
management believes such matters will not materially and adversely affect our financial position, results 
of operations or cash flows.  

-24- 

 
Western Ethanol Company 

On January 9, 2009, Western Ethanol Company, LLC (―Western Ethanol‖) filed a complaint in 
the Superior Court of the State of California (the ―Superior Court‖) naming Kinergy as defendant. In the 
complaint, Western Ethanol alleges that Kinergy breached an alleged agreement to buy and accept 
delivery of a fixed amount of ethanol. On January 12, 2009, Western Ethanol filed an application for 
issuance of right to attach order and order for issuance of writ of attachment. On February 10, 2009, the 
Superior Court granted the right to attach order and order for issuance of writ of attachment against 
Kinergy in the amount of approximately $3.7 million. On February 11, 2009, Kinergy filed an answer to 
the complaint. Kinergy intends to vigorously defend against Western Ethanol’s claims. 

Delta-T Corporation 

On August 18, 2008, Delta-T Corporation filed suit in the United States District Court for the 

Eastern District of Virginia (the ―Virginia Federal Court case‖), naming Pacific Ethanol, Inc. as a 
defendant, along with its subsidiaries Pacific Ethanol Stockton, LLC, Pacific Ethanol Imperial, LLC, 
Pacific Ethanol Columbia, LLC, Pacific Ethanol Magic Valley, LLC and Pacific Ethanol Madera, 
LLC. The suit alleges breaches of the parties’ Engineering, Procurement and Technology License 
Agreements, breaches of a subsequent term sheet and letter agreement and breaches of indemnity 
obligations.   

All of the defendants have moved to dismiss the Virginia Federal Court Case for lack of personal 

jurisdiction and on the ground that all disputes between the parties must be resolved through binding 
arbitration, and, in the alternative, moving to stay the Virginia Federal Court Case pending arbitration. In 
January 2009, these motions were granted by the Court, compelling the case to arbitration. The complaint 
seeks specified contract damages of approximately $6.5 million, along with other unspecified damages. 
We intend to vigorously defend against Delta-T Corporation’s claims.  

Barry Spiegel – State Court Action 

On December 23, 2005, Barry J. Spiegel, a former shareholder and director of Accessity, filed a 
complaint in the Circuit Court of the 17th Judicial District in and for Broward County, Florida (Case No. 
05018512) (the ―State Court Action‖) against Barry Siegel, Philip Kart, Kenneth Friedman and Bruce 
Udell (collectively, the ―Individual Defendants‖). Messrs. Siegel, Udell and Friedman are former 
directors of Accessity and Pacific Ethanol. Mr. Kart is a former executive officer of Accessity and Pacific 
Ethanol.  

The State Court Action relates to the Share Exchange Transaction and purports to state the 

following five counts against the Individual Defendants: (i) breach of fiduciary duty, (ii) violation of the 
Florida Deceptive and Unfair Trade Practices Act, (iii) conspiracy to defraud, (iv) fraud, and (v) violation 
of Florida’s Securities and Investor Protection Act. Mr. Spiegel based his claims on allegations that the 
actions of the Individual Defendants in approving the Share Exchange Transaction caused the value of his 
Accessity common stock to diminish and is seeking approximately $22.0 million in damages. On March 
8, 2006, the Individual Defendants filed a motion to dismiss the State Court Action. Mr. Spiegel filed his 
response in opposition on May 30, 2006. The Court granted the motion to dismiss by Order dated 
December 1, 2006, on the grounds that, among other things, Mr. Spiegel failed to bring his claims as a 
derivative action. 

On February 9, 2007, Mr. Spiegel filed an amended complaint which purports to state the 
following five counts: (i) breach of fiduciary duty, (ii) fraudulent inducement, (iii) violation of Florida’s 
Securities and Investor Protection Act, (iv) fraudulent concealment, and (v) breach of fiduciary duty of 
disclosure. The amended complaint included Pacific Ethanol as a defendant, but it was subsequently 
voluntarily dismissed on August 27, 2007, by Mr. Spiegel as to Pacific Ethanol. On March 23, 2009, Mr. 

-25- 

 
Spiegel filed an amended complaint which renewed his previously voluntarily dismissed case against 
Pacific Ethanol.  Further Mr. Spiegel seeks depositions of Barry Siegel and Philip B. Kart on or around 
April 30, 2009. We intend to vigorously defend against Mr. Spiegel’s claims. 

Barry Spiegel – Federal Court Action 

On December 28, 2006, Barry J. Spiegel, filed a complaint in the United States District Court, 
Southern District of Florida (Case No. 06-61848) (the ―Federal Court Action‖) against the Individual 
Defendants and Pacific Ethanol. The Federal Court Action relates to the Share Exchange Transaction and 
purports to state the following three counts: (i) violations of Section 14(a) of the Exchange Act and SEC 
Rule 14a-9 promulgated thereunder, (ii) violations of Section 10(b) of the Exchange Act and Rule 10b-5 
promulgated thereunder, and (iii) violation of Section 20(A) of the Exchange Act. The first two counts are 
alleged against the Individual Defendants and Pacific Ethanol and the third count is alleged solely against 
the Individual Defendants. Mr. Spiegel bases his claims on, among other things, allegations that the 
actions of the Individual Defendants and Pacific Ethanol in connection with the Share Exchange 
Transaction resulted in a share exchange ratio that was unfair and resulted in the preparation of a proxy 
statement seeking shareholder approval of the Share Exchange Transaction that contained material 
misrepresentations and omissions. Mr. Spiegel is seeking in excess of $15.0 million in damages.  

Mr. Spiegel amended the Federal Court Action on March 5, 2007, and Pacific Ethanol and the 

Individual Defendants filed a Motion to Dismiss the amended pleading on April 23, 2007. Plaintiff 
Spiegel sought to stay his own federal case, but the Motion was denied on July 17, 2007. The Court 
required Mr. Spiegel to respond to our Motion to Dismiss. On January 15, 2008, the Court rendered an 
Order dismissing the claims under Section 14(a) of the Exchange Act on the basis that they were time 
barred and that more facts were needed for the claims under Section 10(b) of the Exchange Act. The 
Court, however, stayed the entire case pending resolution of the State Court Action.  

Item 4.  Submission of Matters to a Vote of Security Holders. 

None. 

-26- 

 
PART II  

Item 5. Market For Registrant’s Common Equity, Related Stockholder Matters and Issuer 

Purchases of Equity Securities. 

Market Information 

Our common stock has been traded on the Nasdaq Global Market (formerly, the Nasdaq National 
Market) under the symbol ―PEIX‖ since October 10, 2005. Prior to October 10, 2005 and since March 24, 
2005, our common stock traded on the Nasdaq Capital Market (formerly, the Nasdaq SmallCap Market) 
under the symbol ―PEIX.‖ Prior to March 24, 2005, our common stock traded on the Nasdaq SmallCap 
Market under the symbol ―ACTY.‖ The table below shows, for each fiscal quarter indicated, the high and 
low closing prices for shares of our common stock. This information has been obtained from The Nasdaq 
Stock Market. The prices shown reflect inter-dealer prices, without retail mark-up, mark-down or 
commission, and may not necessarily represent actual transactions. 

Price Range 

High 

Low 

Year Ended December 31, 2008: 
  $  8.85   $  4.25 
First Quarter (January 1 – March 31) ....................................................................................................  
Second Quarter (April 1 – June 30) .......................................................................................................  
  $  5.65   $  1.81 
Third Quarter (July 1 – September 30) ..................................................................................................  
  $  2.37   $  1.37 
  $  1.41   $  0.36 
Fourth Quarter (October 1 – December 31) ..........................................................................................  

Year Ended December 31, 2007: 
First Quarter ..........................................................................................................................................  
  $  17.85   $  14.22 
Second Quarter ......................................................................................................................................  
  $  16.50   $  12.25 
Third Quarter .........................................................................................................................................  
  $  14.86   $  8.58 
  $  9.46   $  4.22 
Fourth Quarter .......................................................................................................................................  

Security Holders 

As of March 26, 2009, we had 57,750,319 shares of common stock outstanding and held of 

record by approximately 500 stockholders. These holders of record include depositories that hold shares 
of stock for brokerage firms which, in turn, hold shares of stock for numerous beneficial owners. On 
March 26, 2009, the closing sale price of our common stock on the Nasdaq Global Market was $0.38 per 
share. 

Performance Graph  

The graph below shows a comparison of the cumulative total stockholder return on our common 

stock with the cumulative total return on The NASDAQ Stock Market (U.S.) Index and of public 
companies filing reports with the Securities and Exchange Commission under Standard Industrial 
Classification Code 2860—Industrial Organic Chemicals, or Peer Group, in each case over the five-year 
period ended December 31, 2008.  

The graph includes the date of March 23, 2005, the date of the Share Exchange Transaction and 

the date on which we effectively began operating in a business properly categorized under Standard 
Industrial Classification Code 2860—Industrial Organic Chemicals. Our predecessor, Accessity, was in 
an unrelated business prior to March 23, 2005. See ―Business—Company History.‖ 

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The graph assumes $100 invested at the indicated starting date in our common stock and in each 
of The NASDAQ Stock Market (U.S.) Index and the Peer Group, with the reinvestment of all dividends. 
We have not paid or declared any cash dividends on our common stock and do not anticipate paying any 
cash dividends in the foreseeable future. Stockholder returns over the indicated periods should not be 
considered indicative of future stock prices or stockholder returns. This graph assumes that the value of 
the investment in our common stock and each of the comparison groups was $100 on December 31, 2002. 

PACIFIC ETHANOL, INC. 
THE NASDAQ STOCK 

MARKET (U.S.) INDEX 
SIC 2860—INDUSTRIAL 

12/03 

12/04 

Cumulative Total Return ($) 
12/05 
3/23/05 

12/06 

12/07 

12/08 

100.00 

252.34 

385.11 

460.43 

654.89 

349.36 

18.72 

100.00 

110.08 

104.15 

112.88 

126.51 

138.13 

80.47 

ORGANIC CHEMICALS 

100.00 

126.07 

118.68 

105.11 

152.61 

122.81 

52.96 

Dividend Policy 

We have never paid cash dividends on our common stock and do not intend to pay cash dividends 

on our common stock in the foreseeable future. We anticipate that we will retain any earnings for use in 
the continued development of our business. 

Our current and future debt financing arrangements may limit or prevent cash distributions from 

our subsidiaries to us, depending upon the achievement of certain financial and other operating conditions 
and our ability to properly service the debt, thereby limiting or preventing us from paying cash dividends. 
In addition, the holders of our outstanding preferred stock are entitled to dividends of 7%, and those 
dividends must be paid prior to the payment of any dividends to our common stockholders. 

Recent Sales of Unregistered Securities 

None. 

-28- 

COMPARISON OF CUMULATIVE TOTAL RETURN FORTHE FIVE-YEAR PERIOD ENDED DECEMBER 31, 2008$0$100$200$300$400$500$600$70012/0312/073/0512/0512/0612/0712/08Pacific Ethanol, Inc.NASDAQ Composite IndexSIC 2860 — Industrial Organic Chemicals 
 
 
 
 
Purchases of Equity Securities by the Issuer and Affiliated Purchasers 

We have granted to certain employees and directors shares of restricted stock under our 2006 

Stock Incentive Plan pursuant to Restricted Stock Agreements dated and effective as of their respective 
grant dates by and between us and those employees and directors.  

We were obligated to withhold minimum withholding tax amounts with respect to vested shares 

of restricted stock and upon future vesting of shares of restricted stock granted to our employees. Each 
employee was entitled to pay the minimum withholding tax amounts to us in cash or to elect to have us 
withhold a vested amount of shares of restricted stock having a value equivalent to our minimum 
withholding tax requirements, thereby reducing the number of shares of vested restricted stock that the 
employee ultimately receives. If an employee failed to timely make such election, we automatically 
withheld the necessary shares of vested restricted stock. 

In connection with satisfying our withholding requirements, during the month of October 2008, 

we withheld an aggregate of 21,249 shares of our common stock and remitted a cash payment to cover the 
minimum withholding tax amounts, thereby effectively repurchasing from the employees the 21,249 
shares of common stock at a deemed purchase price equal to $1.28 per share for an aggregate purchase 
price of $27,199. 

In connection with satisfying our withholding requirements, during the month of December 2008, 
we withheld an aggregate of 7,045 shares of our common stock and remitted a cash payment to cover the 
minimum withholding tax amounts, thereby effectively repurchasing from the employees the 7,045 shares 
of common stock at a deemed purchase price equal to $0.55 per share for an aggregate purchase price of 
$3,875. 

-29- 

 
Item 6.  Selected Financial Data. 

The following financial information should be read in conjunction with the consolidated audited 

financial statements and the notes to those statements beginning on page F-1 of this report, and the section 
entitled ―Management’s Discussion and Analysis of Financial Condition and Results of Operations‖ 
included elsewhere in this report. The consolidated statements of operations data for the years ended 
December 31, 2008, 2007 and 2006 and the consolidated balance sheet data at December 31, 2008 and 
2007 are derived from, and are qualified in their entirety by reference to, the consolidated audited 
financial statements beginning on page F-1 of this report. The consolidated statements of operations data 
from January 1, 2004 to December 31, 2005 and the consolidated balance sheet data at December 31, 
2004 are derived from, and qualified in their entirety by reference to, the consolidated audited financial 
statements of Pacific Ethanol. The historical results that appear below are not necessarily indicative of 
results to be expected for any future periods.  

Years Ended December 31, 

2008 

2007 

2006 

2005 

2004 

(in thousands, except per share data) 

$ 

Consolidated Statements of Operations Data: 
Net sales ..................................................................................  
703,926 
Cost of goods sold ..................................................................  737,331 
(33,405) 
Gross profit (loss) ...................................................................  
Selling, general and administrative expenses .......................... 30,8 
31,796 
87,047 
Impairment of goodwill…………………………. 
40,900 
Impairment of asset group ...................................................... 30,8 
Income (loss) from operations ................................................ 2,224 
(193,148) 
Other income (expense), net ...................................................  (6,068) 
Income (loss) before noncontrolling interest in 
variable interest entity and provision for 
income taxes ......................................................................  
(199,216) 
Noncontrolling interest in variable interest entity ...................  52,669 
Loss before provision for income taxes ..................................  
(146,547) 
Provision for income taxes......................................................     
(146,547) 
Net loss ...................................................................................  

$ 

Preferred stock dividends ........................................................  
 (4,104) 
Deemed dividend on preferred stock ......................................  (761) 
(151,412) 
Loss available to common stockholders .................................  
(3.02) 
Loss per share, basic and diluted ............................................  
Weighted-average shares outstanding,           

$ 
$ 

$ 

basic and diluted ................................................................  

50,147 

Consolidated Balance Sheet Data: 
Cash and cash equivalents ......................................................  
Working capital (deficit) ......................................................... (57 
Total assets ............................................................................. 64 
Long-term debt .......................................................................  
Stockholders’ equity ...............................................................  

11,466 
(288,313) 
616,834 
937 
209,373 

$ 
$ 
$ 
$ 
$ 

$ 

$ 

$ 

$ 
$ 

$ 
$ 
$ 
$ 
$ 

461,513 
428,614 
32,899 
30,822 
  
  
2,077 
(6,801) 

(4,724) 
(9,676) 
(14,400) 
  
(14,400) 

$ 

$ 

$ 

226,356 
201,527 
24,829 
24,641 
  
  
188 
3,426 

3,614 
(3,756)  
(142)  
  
(142) 

$ 

$ 

$ 

 (4,200) 
(28) 
(18,628) 

$ 
(0.47)  $ 

 (2,998) 
(84,000) 
(87,140) 

$ 
(2.50)   $ 

$ 

87,599 
84,444 
3,155 
12,638 
  
  
(9,483) 
(440) 

20 
13 
7 
2,277 
  
  
(2,270) 
(532) 

(9,923) 
  
(9,923) 
  
(9,923) 

(2,802) 
  
(2,802)  
  
$       (2,802) 

$ 

  
  
(9,923) 

$ 
(0.40)    $ 

  
  
(2,802) 
(0.23) 

39,895 

34,855 

25,066 

12,397 

5,707 
(37,886) 
651,600 
151,188 
282,286 

$ 
$ 
$ 
$ 
$ 

44,053 
96,094 
453,820 
28,970 
298,445 

$ 
$ 
$ 
$ 
$ 

4,521 
(2,894) 
48,185 
1,995 
28,516 

$ 
$ 
$ 
$ 
$ 

  
(1,025) 
7,179 
4,013 
1,356 

No cash dividends on our common stock were declared during any of the periods presented 
above.  Various factors materially affect the comparability of the information presented in the above 
table. These factors relate primarily to a Share Exchange Transaction that was consummated on 
March 23, 2005 with the shareholders of PEI California, and the holders of the membership interests of 
each of Kinergy and ReEnergy, pursuant to which we acquired all of the issued and outstanding capital 
stock of PEI California and all of the outstanding membership interests of Kinergy and ReEnergy. See 
―Business—Company History.‖ In addition, we acquired a minority interest in Front Range on October 
17, 2006, at which date we began treating Front Range, a variable interest entity, as a consolidated 
subsidiary, as we are considered the primary beneficiary. 

-30- 

 
 
 
 
 
 
 
  
  
  
 
 
 
 
 
 
  
  
 
 
 
 
 
 
 
 
 
Item 7.  Management’s Discussion and Analysis of Financial Condition and Results of Operations. 

The following discussion and analysis should be read in conjunction with our consolidated 
financial statements and notes to consolidated financial statements included elsewhere in this report. This 
report and our consolidated financial statements and notes to consolidated financial statements contain 
forward-looking statements, which generally include the plans and objectives of management for future 
operations, including plans and objectives relating to our future economic performance and our current 
beliefs regarding revenues we might generate and profits we might earn if we are successful in 
implementing our business and growth strategies. The forward-looking statements and associated risks 
may include, relate to or be qualified by other important factors, including, without limitation: 

 
 

fluctuations in the market price of ethanol and its co-products;  
the projected growth or contraction in the ethanol and co-product market in which we 
operate;  

  our strategies for expanding, maintaining or contracting our presence in these markets;  
  our ability to successfully develop, finance, construct and operate our current and any future 

ethanol production facilities;  
 
anticipated trends in our financial condition and results of operations; and  
  our ability to distinguish ourselves from our current and future competitors.  

We do not undertake to update, revise or correct any forward-looking statements, except as 

required by law.  

Any of the factors described immediately above or in the ―Risk Factors‖ section above could 
cause our financial results, including our net income or loss or growth in net income or loss to differ 
materially from prior results, which in turn could, among other things, cause the price of our common 
stock to fluctuate substantially. 

Recent Developments 

As a result of ethanol industry conditions that have negatively affected our business, we do not 

currently have sufficient liquidity to meet our anticipated working capital, debt service and other liquidity 
needs in the very near-term. We believe that we have sufficient working capital to continue operations 
only until approximately April 30, 2009 at the latest unless we successfully restructure our debt, 
experience a significant improvement in margins and obtain other sources of liquidity. In addition, 
although various secured creditors are presently forbearing through April 30, 2009 under outstanding 
forbearance agreements from exercising their rights, once those forbearance periods expire or in the event 
of additional defaults, we will be in default to those secured creditors who collectively hold security 
interests in substantially all of our assets. As a result, our 2008 financial statements include an 
explanatory paragraph by our independent registered public accounting firm describing the substantial 
doubt as to our ability to continue as a going concern.  

As of March 26, 2009, we owed approximately $246.5 million in term loans and lines of credit 

associated with the construction and operation of our ethanol plants and approximately $5.3 million under 
our revolving credit facility. As of that date, we had only $4.0 million in cash and $4.7 million of 
additional borrowing availability under our revolving credit facility. As we continue to reduce the number 
of gallons of ethanol we sell and hold in inventory, working capital available to support borrowings under 
our revolving credit facility will reduce proportionately.  

We do not expect to have sufficient liquidity to meet anticipated working capital, debt service and 

other liquidity needs beyond April 30, 2009 at the latest unless we successfully restructure our debt, 
experience a significant improvement in margins and obtain other sources of liquidity. Based on the 

-31- 

 
 
current spread between corn and ethanol prices, the industry is operating at or near break-even cash 
margins. The current spread between ethanol and corn prices cannot support the long-term viability of the 
U.S. ethanol industry in general or us in particular.  

Although we are actively pursuing a number of alternatives, including seeking to restructure our 

debt and seeking to raise additional debt or equity financing, or both, there can be no assurance that we 
will be successful. If we cannot restructure our debt and obtain sufficient liquidity in the very near term, 
we may need to seek protection under the U.S. Bankruptcy Code.  

Business Overview 

Our primary goal is to be the leading marketer and producer of low carbon renewable fuels in the 

Western United States.  

We produce and sell ethanol and its co-products, including wet distillers grain, or WDG, and 

provide transportation, storage and delivery of ethanol through third-party service providers in the 
Western United States, primarily in California, Nevada, Arizona, Oregon, Colorado, Idaho and 
Washington. We have extensive customer relationships throughout the Western United States and 
extensive supplier relationships throughout the Western and Midwestern United States. 

In September 2008, we completed construction of our fourth ethanol plant. Our four ethanol plants, 

which produce ethanol and its co-products, are as follows:  

In addition, we own a 42% interest in Front Range, which owns a plant located in Windsor, 

Colorado, with annual production capacity of up to 50 million gallons. We also intend to either construct 
or acquire additional production facilities as financial resources and business prospects make the 
construction or acquisition of these facilities advisable.  

According to the United States Department of Energy, or DOE, total annual gasoline 

consumption in the United States is approximately 140 billion gallons. Total annual ethanol consumption 
represented less than 7% of this amount in 2008. We believe that the domestic ethanol industry has 
substantial potential for growth to initially reach what we estimate is an achievable level of at least 10% 
of the total annual gasoline consumption in the United States, or approximately 14 billion gallons of 
ethanol annually and thereafter up to 36 billion gallons of ethanol annually under the new national 
Renewable Fuel Standards, or RFS, by 2022. See ―Business—Governmental Regulation.‖  

The ethanol industry has experienced significant adverse conditions over the course of the last 12 

months, including prolonged negative operating margins. We, too, have experienced these adverse 
conditions as well as severe working capital and liquidity shortages, and in response to such conditions, 
we have reduced production significantly until market conditions resume to acceptable levels and 
working capital becomes available. We first reduced production in December 2008 and continued to 
reduce production through the first quarter of 2009. Currently, we have ceased production at our Madera, 
Magic Valley and Stockton facilities. We continue to operate our Columbia and Front Range facilities. 

-32- 

Facility NameFacility LocationDate Operations BeganEstimated Annual Production Capacity (gallons)StocktonStockton, CASeptember 200860,000,000Magic ValleyBurley, IDApril 200860,000,000ColumbiaBoardman, ORSeptember 200740,000,000MaderaMadera, CAOctober 200640,000,000 
 
We continue to assess market conditions and when appropriate, provided we have adequate available 
working capital, we plan to bring these facilities back to operation. 

We intend to reach our goal to be the leading marketer and producer of low carbon renewable 

fuels in the Western United States in part by expanding our relationships with customers and third-party 
ethanol producers to market higher volumes of ethanol, by expanding our relationships with animal feed 
distributors and end users to build local markets for WDG, the primary co-product of our ethanol 
production, and by expanding the market for ethanol by continuing to work with state governments to 
encourage the adoption of policies and standards that promote ethanol as a fuel additive and 
transportation fuel.  

Financial Performance Summary 

Our net sales increased by $242.4 million, or 53%, to $703.9 million for the year ended 
December 31, 2008 from $461.5 million for the year ended December 31, 2007. Our net loss, however, 
increased by $132.1 million to $146.5 million for the year ended December 31, 2008 from $14.4 million 
for the year ended December 31, 2007.  

Factors that contributed to our results of operations for 2008 include: 

  Net sales. The increase in our net sales in 2008 as compared to 2007 was primarily due to the 

following combination of factors: 

o  Higher sales volumes. Total volume of ethanol sold increased by 41% to 268.4 

million gallons in 2008 from 190.6 million gallons in 2007. The increase in sales 
volume is primarily due to two additional ethanol production facilities that 
commenced operations in 2008. Sales also increased in 2008 from additional supply 
purchased from third-party suppliers under our ethanol marketing agreements; and 

o  Higher ethanol prices. The increase in sales volume was also due to slightly higher 

ethanol prices. Our average sales price of ethanol increased 5% to $2.25 per gallon in 
2008 as compared to $2.15 per gallon in 2007.  

  Gross margins. Our gross margins decreased significantly to negative 4.7% for 2008 as 

compared to a gross profit margin of 7.1% for 2007. This drop in gross profit margins was 
primarily due to higher corn prices and was exacerbated by significant volatility in the corn 
market during 2008. Volatility and the time from purchase of the corn to sale of the resulting 
ethanol created significant losses during 2008. The average price of corn increased by 53% to 
$5.52 per bushel in 2008 from $3.61 per bushel in 2007. The average Chicago Board of 
Trade, or CBOT, price for corn increased by 41% to $5.27 per bushel in 2008 from $3.74 per 
bushel in 2007.  

  Selling, general and administrative expenses. Our selling, general and administrative expenses 
increased by $1.0 million to $31.8 million in 2008 as compared to $30.8 million in 2007 
primarily as a result of increases in administrative staff, bad debt expenses, derivatives 
commissions and noncash compensation expenses, partially offset by decreases in 
professional fees and amortization of intangible assets. Although these expenses increased in 
absolute dollars, they decreased to 4.5% of our net sales in 2008 as compared to 6.6% of our 
net sales in 2007 due to the substantial growth in our net sales over those periods.  

 

Impairments of goodwill and asset group. In 2008, we recognized $87.0 million in impairment 
of goodwill and $40.9 million in impairment of asset group. The impairment of goodwill 
related to our annual goodwill review, mostly reflecting a decline in the valuation of our prior 

-33- 

 
purchase of our 42% interest in Front Range. The impairment of asset group reflects our 
decision to abandon construction of our Imperial Valley ethanol production facility due to 
adverse market conditions. 

  Other expense. Our other expense decreased by $0.7 million to $6.1 million in 2008 from $6.8 
million in 2007. This decrease is primarily due to increased sales of our business energy tax 
credits, decreased mark-to-market losses and decreased finance cost amortization, which were 
partially offset by an increase in interest expense, decreased interest income and increased 
bank fees.  

Sales and Margins 

Over the past three years, our sales mix has shifted significantly from sales generated solely as a 

marketer of ethanol produced by third parties to now include sales generated as a producer of our own 
ethanol. Our cost structure also changed significantly, beginning in 2007, as our Madera and Front Range 
facilities were in full production and continuing in 2008 as our Columbia facility was in full production 
and our Magic Valley and Stockton facilities commenced operations. The shift in our sales mix greatly 
altered our dependency on certain market conditions from that based primarily on the market price of 
ethanol to that based significantly on the cost of corn, the principal input commodity for our production of 
ethanol. Accordingly, our profitability is now highly dependent on the market price of ethanol and the 
cost of corn.   

Average ethanol sales prices rose in 2008 as compared to 2007. Specifically, the average CBOT 

price of ethanol increased by 12% in 2008 as compared to 2007. The increase in the prevailing market 
price of ethanol was primarily due to the rise of crude oil during the middle of 2008.  

Average corn prices increased significantly in 2008 as compared to 2007. Specifically, the 

average CBOT price of corn increased by 41% in 2008 as compared to 2007. The increase in the 
prevailing market price of corn was the primary cause of the increase in our average corn price. More 
importantly, corn prices experienced significant volatility in a relatively short period of time during 2008. 
The average CBOT price of corn increased from $5.99 at the end of May 2008 to a record high of $7.55 
on June 27, 2008 and then decreased to $5.88 at the end of July 2008. Since we now produce more of the 
ethanol that we sell and there is a time lag from the time we price and purchase our corn to the actual sale 
of resultant ethanol to a customer, this volatility created significant negative margins for us in 2008.   

We have three principal methods of selling ethanol: as a merchant, as a producer and as an agent. 

See ―Critical Accounting Policies—Revenue Recognition‖ below.  

When acting as a merchant or as a producer, we generally enter into sales contracts to ship 
ethanol to a customer’s desired location. We support these sales contracts through purchase contracts with 
several third-party suppliers or through our own production. We manage the necessary logistics to deliver 
ethanol to our customers either directly from a third-party supplier or from our inventory via truck or rail. 
Our sales as a merchant or as a producer expose us to price risks resulting from potential fluctuations in 
the market price of ethanol and corn. Our exposure varies depending on the magnitude of our sales and 
purchase commitments compared to the magnitude of our existing inventory, as well as the pricing 
terms—such as market index or fixed pricing—of our contracts. We seek to mitigate our exposure to 
price risks by implementing appropriate risk management strategies.  

When acting as an agent for third-party suppliers, we conduct back-to-back purchases and sales in 

which we match ethanol purchase and sale contracts of like quantities and delivery periods. When acting 
as an agent for third-party suppliers, we receive a predetermined service fee and we have little or no 
exposure to price risks resulting from potential fluctuations in the market price of ethanol.  

-34- 

 
We believe that our gross profit margins will primarily depend on five key factors:  

 

 

 

the market price of ethanol, which we believe will be impacted by the degree of 
competition in the ethanol market, the price of gasoline and related petroleum products, 
and government regulation, including tax incentives;  

the market price of key production input commodities, including corn and natural gas;  

the market price of WDG; 

  our ability to anticipate trends in the market price of ethanol, WDG, and key input 

commodities and implement appropriate risk management and opportunistic strategies; 
and  

 

the proportion of our sales of ethanol produced at our facilities to our sales of ethanol 
produced by third-parties.  

Management seeks to optimize our gross profit margins by anticipating the factors above and, 
when resources are available, implementing hedging transactions and taking other actions designed to 
limit risk and address the various factors. For example, we may seek to decrease inventory levels in 
anticipation of declining ethanol prices and increase inventory levels in anticipation of increasing ethanol 
prices. We may also seek to alter our proportion or timing, or both, of purchase and sales commitments.  

Our limited resources to act upon anticipated factors above and/or our inability to anticipate these 

factors or their relative importance, and adverse movements in the factors themselves, could result in 
declining or even negative gross profit margins over certain periods of time. Our ability to anticipate 
those factors or favorable movements in the factors themselves may enable us to generate above-average 
gross profit margins. However, given the difficulty associated with successfully forecasting any of these 
factors, we are unable to estimate our future gross profit margins.  

Results of Operations 

The following selected financial data should be read in conjunction with our consolidated 
financial statements and notes to our consolidated financial statements included elsewhere in this report, 
and the other sections of ―Management’s Discussion and Analysis of Financial Condition and Results of 
Operations‖ contained in this report. 

Certain performance metrics that we believe are important indicators of our results of operations 

include: 

Gallons sold (in millions) 

Average sales price per gallon  

Corn cost per bushel—CBOT equivalent(1) 
Co-product revenues as % of delivered cost of 

corn(2) 

Average CBOT ethanol price per gallon  
Average CBOT corn price per bushel  

Years Ended 
December 31, 
2007 

190.6 

$ 

$ 

$ 
$ 

2.15 

3.61 

24.8% 

1.98 
3.74 

$ 

$ 

$ 
$ 

2008 

268.4 

2.25 

5.52 

22.5% 

2.22 
5.27 

$ 

$ 

$ 
$ 

2006 

 101.7 

2.28 

2.44 

Percentage Variance 
From Prior Year 

2008 

40.8% 

4.7% 

52.9% 

2007 

87.4% 

(5.7)% 

48.0% 

33.4% 

(9.3)% 

(25.7)% 

2.52 
2.60 

12.1% 
40.9% 

(21.4)% 
43.9% 

_____________ 
(1)  We exclude transportation—or ―basis‖—costs in our corn costs to calculate a CBOT equivalent in order to more appropriately compare 

our corn costs to average CBOT corn prices.  

(2)  Co-product revenues as % of delivered cost of corn shows our yield based on sales of WDG generated from ethanol we produced.  

-35- 

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Year Ended December 31, 2008 Compared to the Year Ended December 31, 2007 

Years Ended 
December 31, 

2008 

2007 

Dollar  
Variance 
Favorable 

Percentage  
Variance 
Favorable 

(Unfavorable)  (Unfavorable) 
(dollars in thousands) 

Results as a Percentage 
of Net Sales for the 
Years Ended 
December 31, 

2008 

2007 

703,926  $ 

$ 

Net sales ....................................................................  
Cost of goods sold .....................................................  737,331 
Gross profit (loss) ......................................................  (33,405) 
Selling, general and administrative expenses ............   31,796 
Impairment of goodwill .............................................   87,047 
Impairment of asset group .........................................   40,900 
Income (loss) from operations  ..................................  (193,148) 
Other income (expense), net ......................................   (6,068) 
Loss before noncontrolling interest in 

461,513  $ 
428,614 
32,899 
30,822 
— 
— 
2,077 
(6,801) 

242,413 
(308,717) 
(66,304) 
(974) 
(87,047) 
(40,900) 
(195,225) 
733 

52.5% 
(72.0) 
(201.5) 
(3.2) 

NM 
NM 
NM 

10.8 

100.0% 
104.7 
(4.7) 
4.5 
12.4 
5.8 
(27.4) 
(0.9) 

100.0% 
92.9 
7.1 
6.6 
— 
— 
0.5 
(1.5) 

variable interest entity and provision for 
income taxes ...........................................................  (199,216) 

(4,724) 

(194,492) 

NM 

(28.3) 

(1.0) 

Noncontrolling interest in variable interest 

entity .......................................................................   52,669 
Loss before provision for income taxes .....................  (146,547) 
Provision for income taxes ........................................   — 
Net loss ......................................................................  
Preferred stock dividends ..........................................  
Deemed dividend on preferred stock .........................  

(62,345) 
(132,147) 
— 
$ 
(132,147) 
$          (4,104)  $          (4,200)  $                 96 
(733) 

(9,676) 
(14,400) 
— 
(14,400)  $ 

(146,547)  $ 

(761) 

(28) 

(644.3) 
(917.7) 
— 

(917.7)% 
2.3% 

NM 

Loss available to common stockholders ....................  

$ 

(151,412)  $ 

(18,628)  $ 

(132,784) 

(712.8)% 

7.5 
(20.8) 
— 
(20.8)% 
(0.6)% 
(0.1) 

(21.5)% 

       (2.1)       
(3.1) 
— 
(3.1)% 
       (0.9)% 
       (0.0)   

(4.0)% 

Net Sales 

The increase in our net sales in 2008 as compared to 2007 was primarily due to a substantial 

increase in sales volume, coupled with higher average sales prices.  

Total volume of ethanol sold increased by 77.8 million gallons, or 41%, to 268.4 million gallons 

in 2008 as compared to 190.6 million gallons in 2007. The substantial increase in sales volume is 
primarily due to production at all four of our facilities, two of which were completed in 2008, as well as 
increased sales volume from our third-party ethanol marketing agreements. During 2008, we completed 
construction of our Stockton and Magic Valley facilities and in 2007, we completed construction of our 
Columbia facility. Our Madera facility has been in operation since October 2006. The increased amount 
of sales from our Columbia, Magic Valley and Stockton facilities contributed $182.9 million to the 
increase in our net sales for 2008. 

Our average sales price per gallon increased 5% to $2.25 in 2008 from an average sales price per 

gallon of $2.15 in 2007. The average CBOT price per gallon increased 12% to $2.22 in 2008 from an 
average CBOT price per gallon of $1.98 in 2007. Our average sales price per gallon did not increase as 
much as the average CBOT price per gallon for 2008 due to both the timing of our sales and the 
proportion of our fixed-price contracts during a period of rising ethanol prices.  

Cost of Goods Sold and Gross Profit (Loss) 

Our gross margin declined to a negative $33.4 million for 2008 from a positive $32.9 million for 
2007 due to higher corn costs. Corn is the single largest component of the cost of our ethanol production 
and has become a larger portion of our cost of goods sold as we have significantly increased our ethanol 
production. 

Overall, the price of corn had a much larger impact on our production costs due to the timing of 
the corn and the related ethanol pricing from the time we purchase corn to the sale of ethanol. Generally, 

-36- 

 
 
 
 
we fix our corn price upon shipment from the vendor, and in a falling market, our margins are compressed 
as both corn and ethanol prices continue to fall from transit to processing of the corn. Further, during 
2008 we experienced unprecedented volatility in the price of corn ranging from the CBOT low for the 
year of $2.94 to the CBOT high for the year of $7.55. These prices moved in such a short period of time 
that it became difficult to sell the related ethanol production before the prices of both corn and ethanol 
changed dramatically- primarily downward-from the time of the corn purchase. Further, due to falling 
market prices toward the end of 2008, corn and ethanol ending inventories had been purchased and 
produced, respectively, at prices higher than prevailing spot prices for the commodities at the end of 
2008. As a result, we recorded additional losses from this market adjustment of approximately $1.7 
million in 2008. 

Our sales volume resulting from the marketing and sale of ethanol produced by third parties 
decreased as an overall percentage of our total net sales, as production of our own ethanol has been 
growing rapidly. Our purchase and sale prices of ethanol produced by third parties typically fluctuate 
closely with market prices. As a result, our average cost of ethanol purchased from third parties increased 
in line with the overall increase in our average sales price per gallon. 

Our net derivative losses were $2,820,000 for 2008 as compared to losses of $4,122,000 for 2007. 
Included in the net losses for 2008 are net losses of $1,131,000 related to settled non-designated positions.  

Selling, General and Administrative Expenses 

Our selling, general and administrative expenses, or SG&A, increased by $1.0 million to $31.8 
million for 2008 as compared to $30.8 million for 2007. SG&A, however, decreased as a percentage of 
net sales due to our significant sales growth. The increase in the dollar amount of SG&A is primarily due 
to the following factors: 

  payroll and benefits increased by $2,531,000 due to increased administrative staff;  

  bad debt expense increased by $2,216,000 due to growth in accounts receivable and 

certain customers facing difficult liquidity positions; 

  derivative commissions increased by $1,424,000 due to significant trades during the year; 

and 

  noncash compensation expense increased by $791,000 due to additional restricted stock 

grant activity during the year. 

Partially offsetting the foregoing increases were the following decreases: 

  professional fees decreased $1,473,000 due to lower consulting fees and temporary 

staffing during the year; and 

 

amortization of intangible assets decreased $3,137,000, primarily resulting from a 
reduction in amortization expense associated with our acquisition of our 42% ownership 
interest in Front Range, as we have fully amortized a significant portion of the intangible 
assets associated with the acquisition.  

Impairment of Goodwill 

Statement of Financial Accounting Standards, or SFAS, No. 142, Goodwill and Other Intangible 

Assets, requires us to test goodwill for impairment at least annually. In accordance with SFAS No. 142, 
we conducted an impairment test of goodwill as of March 31, 2008. As a result, we recorded a non-cash 

-37- 

 
impairment charge of $87,047,000, requiring us to write-off our entire goodwill balances from our 
previous acquisitions of Kinergy Marketing LLC, or Kinergy, and Front Range. The impairment charge 
will not result in future cash expenditures. 

Impairment of Asset Group 

In accordance with SFAS No. 144, Accounting for the Impairment or Disposal of Long-Lived 

Assets, as of September 30, 2008, we performed our impairment analysis for our asset group associated 
with our suspended plant construction project in the Imperial Valley near Calipatria, California, or the 
Imperial Project. At September 30, 2008, the asset group consisted of gross property and equipment of 
$43,751,000. In addition, the Imperial Project had construction-related accounts payable and accrued 
expenses of $17,245,000. We do not intend to resume construction of the Imperial Project. In November, 
2008, we began proceedings to liquidate these assets and liabilities. After assessing the estimated 
undiscounted cash flows, we recorded an impairment charge of $40,900,000, thereby reducing our 
property and equipment at September 30, 2008, by that amount. As conditions in the industry and viable 
financing options become available, we will assess resuming construction. To the extent we are relieved 
of the related liabilities, we may record a gain in the period in which the relief occurs. 

Other Income (Expense), Net 

Other  expense  decreased  by  $0.7  million  to  $6.1  million  in  2008  from  other  expense  of  $6.8 

million in 2007. The decrease in other expense is primarily due to the following factors: 

 

increased other income of $9,636,000 primarily related to sales of our business energy tax 
credits sold as pass through investments to interested purchasers;  

  decreased net mark-to-market losses of $4,180,000 from our interest rate hedges which 
required that we mark-to-market our ineffective positions in a declining interest rate 
environment; the ineffectiveness related to our interest rate swaps in 2008 related 
primarily to the de-designation of our interest rate swaps associated with our debt 
financing, which is currently being restructured and it is not probable that we will make 
our required payments as currently structured. In 2007, we recorded a loss of $5,589,000 
primarily resulting from the suspension of construction of our Imperial Valley project in 
the fourth quarter of 2007; and 

  decreased finance cost amortization of $2,708,000 related to our prior financing 

arrangements, which were replaced by our current financing arrangements, requiring 
accelerated amortization on the prior financing arrangements. 

These items were partially offset by: 

 

interest expense increased by $10,584,000 as we have increased our debt and ceased 
capitalizing interest associated with our plant construction program;   

  decreased interest income of $4,346,000 due to our use of cash for construction activities 

over the past year; and 

 

increased bank fees of $866,000 primarily related to our obtaining waivers for our 
construction financing debt, due to non compliance at the end of 2007 and a requirement 
that we pay additional bank fees to obtain such waivers during the period. 

-38- 

 
Noncontrolling Interest in Variable Interest Entity 

Noncontrolling interest in variable interest entity relates to the consolidated treatment of Front 
Range, a variable interest entity, and represents the noncontrolling interest of others in the earnings of 
Front Range. We consolidate the entire income statement of Front Range for the period covered. 
However, because we own only 42% of Front Range, we must reduce our net income or increase our net 
loss for the noncontrolling interest, which is the 58% ownership interest that we do not own. This amount 
decreased by $62,345,000 to a loss of $52,669,000 in 2008 from income of $9,676,000 in 2007 primarily 
due to goodwill impairment associated with amounts recorded in the original acquisition of our interests 
in Front Range. 

Preferred Stock Dividends 

Shares of our Series A and B Preferred Stock are entitled to quarterly cumulative dividends 
payable in arrears an amount equal to 5% and 7% per annum, respectively, of the purchase price per share 
of the Preferred Stock, or, and only in 2007, at our option, payable in additional shares of Series A 
Preferred Stock based on the value of the purchase price per share of the Series A Preferred Stock. In 
2008, we declared and paid cash dividends on our Series A and B Preferred Stock in the aggregate 
amounts of $1,709,000 and $2,395,000, respectively.  

During 2008, the former holder of our Series A Preferred Stock converted all of its shares of 
Series A Preferred Stock into shares of our common stock. As a result, at December 31, 2008, there were 
no outstanding shares of Series A Preferred Stock. 

Deemed Dividend on Preferred Stock 

During 2008, we recorded a deemed dividend on preferred stock of $761,000 in connection with 
a subsequent issuance of shares of Series B Preferred Stock. This non-cash dividend reflects the implied 
economic value to the preferred stockholder of being able to convert the shares into common stock at a 
price (as adjusted for the value allocated to the warrants) which was in excess of the fair value of the 
Series B Preferred Stock at the time of issuance. The fair value was calculated using the difference 
between the conversion price of the Series B Preferred Stock into shares of common stock, adjusted for 
the value allocated to the warrants, of $4.79 per share and the fair market value of our common stock of 
$5.65 on the date of issuance of the Series B Preferred Stock. The deemed dividend on preferred stock is 
a reconciling item and adjusts our reported net loss, together with the preferred stock dividends discussed 
above, to loss available to common stockholders. 

-39- 

 
Year Ended December 31, 2007 Compared to the Year Ended December 31, 2006 

Years Ended 
December 31, 

2007 

2006 

Dollar  
Variance 
Favorable 

Percentage  
Variance 
Favorable 

(Unfavorable)  (Unfavorable) 
(dollars in thousands) 

Results as a Percentage 
of Net Sales for the 
Years Ended 
December 31, 

2007 

2006 

461,513  $ 

$ 

Net sales ....................................................................  
Cost of goods sold .....................................................  428,614 
Gross profit ................................................................   32,899 
Selling, general and administrative expenses ............   30,822 
Income from operations  ............................................   2,077 
Other income (expense), net ......................................   (6,801) 
Income (loss) before noncontrolling interest 
in variable interest entity and provision for 
income taxes ...........................................................   (4,724) 

226,356  $ 
201,527 
24,829 
24,641 
188 
3,426 

235,157 
(227,087) 
8,070 
(6,181) 
1,889 
(10,227) 

103.9% 
(112.7) 
32.5 
(25.1) 
1,004.8 
(298.5) 

100.0% 
92.9 
7.1 
6.6 
0.5 
(1.5) 

100.0% 
89.0 
11.0 
10.9 
0.1 
1.5 

3,614 

(8,338) 

(230.7) 

(1.0) 

1.6 

Noncontrolling interest in variable interest 

entity .......................................................................   (9,676) 
Loss before provision for income taxes .....................  (14,400) 
Provision for income taxes  .......................................   — 
Net loss ......................................................................  
Preferred stock dividends ..........................................  
Deemed dividend on preferred stock .........................  

(5,920) 
(14,258) 
— 
$ 
(14,258) 
$          (4,200)  $          (2,998)  $          (1,202) 
83,972 

(3,756) 
(142) 
— 
(142)  $ 

(14,400)  $ 

(84,000) 

(28) 

(157.6) 
(10,040.9) 

— 
(10,040.9)% 
(40.1)% 
100.0 

(2.1) 
(3.1) 
— 
(3.1)% 
(0.9)% 
(0.0) 

       (1.7) 
(0.1) 
— 
(0.1)% 
       (1.3)% 
     (37.1) 

Loss available to common stockholders ....................  

$ 

(18,628)  $ 

(87,140)  $ 

68,512 

78.6% 

(4.0)% 

(38.5)% 

Net Sales 

The increase in our net sales in 2007 as compared to 2006 was primarily due to a substantial 

increase in sales volume, which was partially offset by decreased average sales prices.  

Total volume of ethanol sold increased by 88.9 million gallons, or 87%, to 190.6 million gallons 

in 2007 as compared to 101.7 million gallons in 2006. The substantial increase in sales volume is 
primarily due to a full year of ethanol production at our Madera and Front Range facilities in 2007. Our 
Madera and Front Range facilities each accounted for less than three months of ethanol production in 
2006. In addition, in 2007, we commenced ethanol production at our Columbia facility and also generated 
increased sales from the purchase and resale of additional supply from third-parties under our ethanol 
marketing agreements. The production and sale of ethanol and its co-products from our Madera and 
Columbia facilities, and through Front Range, contributed an aggregate of $194.0 million to our increase 
in net sales in 2007. 

Our average sales price per gallon declined 6% to $2.15 in 2007 from an average sales price per 

gallon of $2.28 in 2006. The average CBOT price per gallon declined 21% to $1.98 in 2007 from an 
average CBOT price per gallon of $2.52 in 2006. We believe that we were insulated from some of this 
decline due to our fixed-price ethanol contracts which were partially offset by derivative losses incurred 
as a result of locking in margins.  

Cost of Goods Sold and Gross Profit 

The increase in our cost of goods sold in 2007 as compared to 2006 was predominantly due to 

increased sales volume and increased corn costs which contributed to higher costs per gallon. Our gross 
margin declined to 7.1% in 2007 from 11.0% in 2006 primarily due to increased corn costs, lower average 
sales prices per gallon and losses on derivatives, as further discussed below.  

Although a large proportion of our sales volume results from the marketing and sale of ethanol 

produced by third parties, production of our own ethanol began growing rapidly in 2007 as new facilities 

-40- 

 
 
 
 
commenced operations. Our purchase and sale prices of ethanol produced by third parties typically 
fluctuate closely with market prices. As a result, our average cost of ethanol purchased from third parties 
decreased in line with the overall decline in our average sales price per gallon.  

Corn is the single largest component of the cost of our ethanol production. Average corn prices 

rose significantly in 2007 as compared to 2006, with greater increases occurring in the second half of 
2007 than in the first half of the year. These increases pushed our average corn price higher than the 
average market price for all of 2007 because our corn requirements increased significantly during the 
second half of 2007 due to the commencement of operations at our Columbia facility in September 2007. 
Overall, the price of corn had a much larger impact on our production costs per gallon in 2007 than in 
2006 due to the higher proportion of sales from production of our own ethanol in 2007 as compared to 
2006.  

Cost of goods sold also increased by $4,122,000 from net losses on derivatives in 2007 as 

compared to only a nominal amount in 2006. These losses resulted from derivatives that we entered in 
order to lock in margins during the year and were partially offset by gains from derivatives we entered in 
order to lock in the price of corn. Of these losses, $1,649,000 was related to open positions at December 
31, 2007.  

Selling, General and Administrative Expenses 

Our SG&A increased by $6,181,000 to $30,822,000 for 2007 as compared to $24,641,000 for 
2006. SG&A, however, decreased as a percentage of net sales due to our significant sales growth. The 
increase in the dollar amount of SG&A is primarily due to the following factors: 

  payroll and benefits increased by $3,017,000, or 68%, due to increased administrative 

staff;  

 

amortization of intangible assets resulting from our acquisition of our 42% ownership 
interest in Front Range increased by $2,117,000, as we incurred a full year of 
amortization compared to less than three months in 2006;  

  SG&A attributable to Front Range increased by $2,042,000 as we incurred a full year of 

these expenses as compared to less than three months in 2006; 

 

 

 

 

consulting and temporary staff expenses increased by $1,950,000, or 126%, due to the 
retention of additional consulting and temporary staff personnel to assist us in meeting 
our accounting and public reporting requirements, including as we transitioned our 
permanent staff to our new corporate headquarters in Sacramento, California; these 
consulting and temporary staff personnel also assisted us in training new administrative 
staff members; 

recruiting, hiring and training expenses increased by $709,000, or 1,055%, employee 
travel and office setup costs increased by $377,000, or 243%, and rent expense increased 
by $457,000, or 221%; each of these increases resulted primarily from the relocation of 
our corporate headquarters in early 2007 from Fresno to Sacramento; 

external audit costs increased by $582,000, or 312%, due to our overall growth and 
business initiatives; and 

travel-related costs increased by $311,000, or 52%, due to expanded operations and new 
office and facility locations. 

-41- 

 
Partially offsetting the foregoing increases were the following decreases: 

  non-cash compensation expense decreased by $4,023,000, or 64%, due to the completion 

of vesting of incentive compensation paid to employees and consultants;  

 

 

legal expenses decreased by $918,000, or 43%, primarily due to one-time costs 
associated with greater legal activity from litigation and business transactions that 
occurred in 2006; and 

costs associated with implementing and testing our internal controls and related 
compliance required under the Sarbanes-Oxley Act of 2002 decreased by $902,000, or 
76%, as many costs that occurred in 2006 were related predominantly to our initial 
implementation and testing of our internal controls. 

Other Income (Expense), Net 

Other expense increased by $10,227,000 to $6,801,000 in 2007 from other income of $3,426,000 

in 2006. The increase in other expense is primarily due to the following factors: 

 

 

interest expense increased by $1,828,000, or 286%, due to additional borrowings and a 
full year of interest accruing on outstanding debt; and 

amortization of interest and financing costs increased by $3,164,000, or 305%, primarily 
due to an amendment to our construction financing credit facility that reduced its 
application from five to four facilities and reduced the total amount of available financing; 
as a result, we wrote off $1,962,000 of unamortized costs associated with our Imperial 
Valley facility, the construction of which had been suspended; interest and financing costs 
incurred under the construction phase of each of our facilities which were being 
capitalized until the corresponding facility became operational; this increase in 
amortization of interest and financing costs is net of approximately $7,823,000 of 
additional capitalized amounts over 2006. 

In addition, we recognized losses of $119,000 and $5,442,000 of effective and ineffectiveness 

positions, respectively, from our interest rate hedges which required that we mark-to-market our 
ineffective positions in a declining interest rate environment. The ineffectiveness related to our interest 
rate swaps and primarily resulted from the suspension of construction of our Imperial Valley facility. 

Noncontrolling Interest in Variable Interest Entity 

Noncontrolling interest in variable interest entity relates to the consolidated treatment of Front 
Range, a variable interest entity, and represents the noncontrolling interest of others in the earnings of 
Front Range. We consolidate the entire income statement of Front Range for the period covered. 
However, because we own only 42% of Front Range, we must reduce our net income or increase our net 
loss for the noncontrolling interest, which is the 58% ownership interest that we do not own. This amount 
increased by $5,920,000 to $9,676,000 in 2007 from $3,756,000 in 2006 due to the consolidation of Front 
Range’s operations for all of 2007 as compared to less than three months in 2006. 

Preferred Stock Dividends 

Shares of our Series A Preferred Stock are entitled to quarterly cumulative dividends payable in 

arrears in cash in an amount equal to 5% per annum of the purchase price per share of the Series A 
Preferred Stock, or, at the time, our option, payable in additional shares of Series A Preferred Stock based 
on the value of the purchase price per share of the Series A Preferred Stock. In 2007, we declared and 

-42- 

 
paid dividends on our Series A Preferred Stock in the aggregate amount of $4,200,000 comprised of cash 
dividends in the aggregate amount of $3,150,000 for the first three quarters and a dividend payment-in-
kind in the amount of $1,050,000 that was issued in shares of Series A Preferred Stock for the fourth 
quarter. 

Deemed Dividend on Preferred Stock 

We recorded a deemed dividend on preferred stock of $28,000 for 2007 in connection with our 
issuance of shares of Series A Preferred Stock as a dividend payment-in-kind for the fourth quarter. We 
also recorded a deemed dividend on preferred stock of $84,000,000 for 2006 in connection with our initial 
issuance of shares of Series A Preferred Stock. These non-cash dividends reflect the implied economic 
value to the preferred stockholder of being able to convert these additional shares into common stock at 
prices which were in excess of the fair value of the Series A Preferred Stock at the times of issuance. The 
fair value was calculated using the difference between the agreed-upon conversion price of the Series A 
Preferred Stock into shares of common stock of $8.00 per share and the fair market value of our common 
stock of $8.21 and $29.27 on the date of issuance of the additional shares of Series A Preferred Stock for 
2007 and 2006, respectively. The fair value allocated to the initial issuance of the Series A Preferred 
Stock in 2006 was in excess of the gross proceeds received of $84,000,000 in connection with the initial 
sale of the Series A Preferred Stock; however, the deemed dividend on the Series A Preferred Stock for 
2006 is limited to the gross proceeds received of $84,000,000. The deemed dividend on preferred stock is 
a reconciling item and adjusts our reported net loss, together with the preferred stock dividends discussed 
above, to loss available to common stockholders. 

Liquidity and Capital Resources 

Overview and Outlook 

Our financial statements have been prepared on a going concern basis, which contemplates the 

realization of assets and the satisfaction of liabilities in the normal course of business. As a result of 
ethanol industry conditions that have negatively affected our business, we do not currently have sufficient 
liquidity to meet our anticipated working capital, debt service and other liquidity needs in the very near-
term. We have suspended operations at three of our four wholly-owned ethanol production facilities due 
to market conditions and in an effort to conserve capital. We have also taken and expect to take additional 
steps to preserve liquidity. However, despite any additional cost-saving steps we may take, we believe 
that we have sufficient working capital to continue operations only until approximately April 30, 2009 at 
the latest unless we successfully restructure our debt, experience a significant improvement in margins 
and obtain other sources of liquidity.   

We are in default under our construction-related term loans in the aggregate amount of 
approximately $230 million and under Kinergy’s revolving line of credit as well as $31.5 million in notes 
payable to another lender. In February 2009, we entered into forbearance agreements with each of the 
lenders, which were amended in March 2009, under which the lenders agreed to forbear from exercising 
their rights until April 30, 2009 absent further defaults. Although we are actively pursuing a number of 
alternatives, including seeking to restructure our debt and seeking to raise additional debt or equity 
financing, or both, there can be no assurance that we will be successful. If we cannot restructure our debt 
and obtain sufficient liquidity in the very near term, we may need to seek protection under the U.S. 
Bankruptcy Code.  

Quantitative Year-End Liquidity Status 

We believe that the following amounts provide insight into our liquidity and capital resources. 

The following selected financial data should be read in conjunction with our consolidated financial 
statements and notes to consolidated financial statements included elsewhere in this report, and the other 

-43- 

 
sections of ―Management’s Discussion and Analysis of Financial Condition and Results of Operations‖ 
contained in this report (dollars in thousands): 

As of and for the  
Year Ended December 31,  

2008 

2007 

Variance 

Current assets ................................................................  $ 
Current liabilities ..........................................................  $ 
Property and equipment, net .........................................  $ 
Notes payable, net of current portion ............................  $ 
Cash provided by (used in) operating activities ............  $ 
Working capital ............................................................  $ 
Working capital ratio ....................................................   

71,891 
360,204 
530,037 
937 
(55,175) 
(288,313) 
0.20 

$ 
$ 
$ 
$ 
$ 
$ 

82,193 
120,079 
468,704 
151,188 
16,718 
(37,886) 
0.68 

(12.5)% 
200.0% 
13.1% 
(99.4)% 
(430.0)% 
(661.0)% 
(70.6)% 

Change in Working Capital and Cash Flows 

Working capital decreased to a deficit of $288,313,000 at December 31, 2008 from a deficit of 

$37,886,000 at December 31, 2007 as a result of a significant increase in current liabilities of 
$240,125,000 and a slight decrease in current assets of $10,302,000.  

Current liabilities significantly increased primarily due to an increase in current portion of debt of 

$294,322,000, as plant financing and operating lines of credit are both in default and under forbearance 
agreements with the related lenders, as new terms are being negotiated. Other increases in current 
liabilities are due to an increase in accrued liabilities of $3,809,000, which were partially offset by 
decreases in accounts payable and accrued liabilities – construction-related of $35,005,000, a decrease in 
trade accounts payable of $8,607,000, a decrease in retentions of $5,252,000 and a decrease in short-term 
note payable of $6,000,000 as that note was paid off by the end of the year and a decrease in derivative 
liabilities of $2,850,000.  

Current assets decreased primarily due to net decreases in marketable securities and accounts 

receivable of $11,573,000 and $4,211,000, respectively, the proceeds of which were predominantly used 
for operations, which were partially offset by an increase in cash and equivalents of $5,759,000 and 
restricted cash of $1,740,000. 

Cash used in our operating activities of $55,175,000 resulted primarily from a loss of 

$146,547,000, noncontrolling interest in variable interest entity of $52,669,000 and a decrease in accounts 
payable and accrued expenses of $20,579,000, partially offset by impairment of goodwill of $87,047,000, 
impairment of asset group of $40,900,000, depreciation and amortization of intangibles of $26,635,000 
and changes in other assets and liabilities.  

Cash used in our investing activities of $140,856,000 resulted primarily from purchases of 
additional property and equipment of $152,635,000, partially offset by proceeds from sales of marketable 
securities of $11,573,000. 

Cash provided by our financing activities of $201,790,000 resulted primarily from proceeds from 
our debt financing and lines of credit of $157,322,000, proceeds from issuances of preferred and common 
stock of $72,292,000, which were partially offset by cash paid for principal debt payments of 
$20,787,000, preferred share dividends of $4,104,000, debt issuance costs of $1,818,000 and dividend 
payments to noncontrolling interests of $1,115,000. 

-44- 

 
 
 
 
 
  
  
  
  
  
  
  
  
Changes in Other Assets and Liabilities 

Goodwill, net, decreased to $0 at December 31, 2008 from $88,168,000 at December 31, 2007 

primarily as a result of our annual impairment analysis which caused us to write the balance down due to 
a lower current valuation as compared to the original purchase that created the goodwill. 

Notes  payable,  net  of  current  portion,  decreased  to  $937,000  at  December  31,  2008  from 
$151,188,000  at  December  31,  2007  primarily  as  a  result  of  an  increase  from  loan  proceeds  used  for 
construction activities at our ethanol plants which were completed in 2008, which increase was partially 
offset by amounts reclassified to current liabilities as the loans and Kinergy’s operating line of credit are 
both in default but presently under a forbearance agreement with the related lenders.  

Debt Financing 

Upon completion of our Stockton facility, our construction loans totaling $230 million converted 

to term loans with scheduled quarterly principal and interest payments due starting on December 31, 
2008. We made the first payment at the end of 2008. We have been unable to make subsequent required 
principal and interest payments on these term loans, resulting in defaults under those loans. In February, 
2009, we obtained a waiver and forbearance agreement with our lenders which was extended in March 
2009. The waiver and forbearance agreement, as extended, provides that the lenders will forbear from 
exercising their rights and remedies under the Debt Financing commencing February 17, 2009 and ending 
on April 30, 2009. Further the waiver and forbearance agreement provides that we may withdraw funds 
otherwise required to be reserved in two accounts designated solely for the Stockton facility and the other 
for future debt service payments. The use of these funds provides approximately $5,385,000 million to us 
for operating activities. Further, the lenders have allowed us to cease payments of principal and interest 
due during the forbearance period. Upon expiration of the forbearance period, or our earlier default under 
the terms of the forbearance, we will be required to repay all outstanding amounts owed to our lenders. 
We are presently attempting to negotiate debt restructuring terms with our lenders. However, we cannot 
assure you that we will be able to successfully negotiate satisfactory terms with our lenders.  

Kinergy Line of Credit 

In February 2009, Kinergy determined that it had violated certain of its covenants, including its 

financial covenant for 2008. In February 2009, we entered into an amendment and forbearance agreement 
with our lender which was further amended in March 2009. The amendment identified certain defaults 
under the loan agreement as to which the lender agreed to forebear from exercising its rights and remedies 
commencing February 13, 2009 through April 30, 2009. During the forbearance period, Kinergy’s lender 
has authorized us to use this line of credit for Kinergy’s operations. The agreement reduced the aggregate 
amount of the credit facility from up to $40,000,000 to up to $10,000,000.  

The agreement also increased the interest rates applicable to the loan. Kinergy may borrow under 

the credit facility based upon (i) a rate equal to (a) the London Interbank Offered Rate (―LIBOR‖), 
divided by 0.90 (subject to change based upon the reserve percentage in effect from time to time under 
Regulation D of the Board of Governors of the Federal Reserve System), plus (b) 4.50% depending on the 
amount of Kinergy’s EBITDA for a specified period, or (ii) a rate equal to (a) the greater of the prime rate 
published by Wachovia Bank from time to time, or the federal funds rate then in effect plus 0.50%, plus 
(b) 2.25% depending on the amount of Kinergy’s EBITDA for a specified period. In addition, Kinergy is 
required to pay an unused line fee at a rate equal to 0.375% as well as other customary fees and expenses 
associated with the credit facility and issuances of letters of credit. Kinergy’s obligations under the loan 
agreement are secured by a first-priority security interest in all of its assets in favor of the lender.  

Upon expiration of the forbearance period, or our earlier default under the terms of the 

forbearance, Kinergy will be required to repay all outstanding amounts owed to its lender. We are 

-45- 

 
presently attempting to negotiate debt restructuring terms with this lender. However, we cannot assure 
you that we will be able to successfully negotiate satisfactory terms with this lender. 

Notes Payable 

In February 2009, we notified lenders that we would not be able to pay off their notes in the 

aggregate amount of $31.5 million due in March 2009. In February 2009, we entered into a forbearance 
agreement with the lenders which was amended in March 2009. Under the terms of the forbearance 
agreement, the lenders agreed to forbear from exercising their rights and remedies against us through 
April 30, 2009. We are presently attempting to negotiate debt restructuring terms with the lenders. 
However, we cannot assure you that we will be able to successfully negotiate satisfactory terms. 

Contractual Obligations 

The  following  table  outlines  payments  due  under  our  significant  contractual  obligations  (in 

thousands):  

Contractual Obligations 
At December 31, 2008 
Sourcing commitments(1) ...........................................................................................................  
Debt principal(2) .........................................................................................................................  
Debt interest(2) ...........................................................................................................................  
Operating leases(3)......................................................................................................................  
Preferred dividends(4) .................................................................................................................  
Total commitments ....................................................................................................................  

2009 
$  28,959 
67,981 
17,728 
3,103 
3,202 
$  120,973 

2011 
$  — 
26,176 
13,462 
2,701 
3,202 
$  45,541 

2012 
$  — 
24,134 
  12,073 
2,035 
3,202 
$  41,444 

2010 
$  — 
15,581 
15,762 
3,082 
3,202 
$ 37,627 

2013 
$  — 
13,976 
  10,415 
1,657 
3,202 
$ 29,250 

Thereafter 
$ 
  158,509 
  19,132 
8,794 
3,202 

Total 
—  $  28,959 
306,357 
     88,572 
21,372 
19,212 
$ 189,637  $ 464,472 

__________ 
(1) 
(2) 

Unconditional purchase commitments for production materials incurred in the normal course of business. 
Payments based on debt agreements as of December 31, 2008, and do not reflect current defaults and any potential 
change in terms from current negotiations with lenders.  
Future minimum payments under non cancelable operating leases. 
Represents dividends on 2,346,152 shares of Series B Preferred Stock. 

(3) 
(4) 

The above table outlines our obligations as of December 31, 2008 and does not reflect the 

changes in our obligations that occurred after that date. 

Critical Accounting Policies 

Our discussion and analysis of our financial condition and results of operations are based upon 

our consolidated financial statements, which have been prepared in accordance with accounting principles 
generally accepted in the United States of America. The preparation of these financial statements requires 
us to make estimates and judgments that affect the reported amounts of assets and liabilities and 
disclosure of contingent assets and liabilities at the date of the financial statements and the reported 
amount of net sales and expenses for each period. The following represents a summary of our critical 
accounting policies, defined as those policies that we believe are the most important to the portrayal of 
our financial condition and results of operations and that require management’s most difficult, subjective 
or complex judgments, often as a result of the need to make estimates about the effects of matters that are 
inherently uncertain. 

Going Concern Assumption 

We have based our financial statements on the assumption of our operations continuing as a 
going concern. Our consolidated financial statements do not include any adjustments relating to the 
recoverability and classification of the recorded asset amounts or the amounts and classification of 
liabilities that might be necessary should we be unable to continue our existence. 

-46- 

 
 
 
 
 
 
 
 
 
 
 
 
 
Revenue Recognition 

We recognize revenue when it is realized or realizable and earned. We consider revenue realized 

or realizable and earned when it has persuasive evidence of an arrangement, delivery has occurred, the 
sales price is fixed or determinable, and collection is reasonably assured in conformity with Staff 
Accounting Bulletin No. 104, Revenue Recognition. 

We derive revenue primarily from sales of ethanol and related co-products. We recognize revenue 

when title transfers to our customers, which is generally upon the delivery of these products to a 
customer’s designated location. These deliveries are made in accordance with sales commitments and 
related sales orders entered into with customers either verbally or in written form. The sales commitments 
and related sales orders provide quantities, pricing and conditions of sales. In this regard, we engage in 
three basic types of revenue generating transactions: 

  As a producer.  Sales as a producer consist of sales of our inventory produced at our facilities. 

  As a merchant.  Sales as a merchant consist of sales to customers through purchases from 

third-party suppliers in which we may or may not obtain physical control of the ethanol or co-
products, though ultimately titled to us, in which shipments are directed from our suppliers to 
our terminals or direct to our customers but for which we accept the risk of loss in the 
transactions. 

  As an agent.  Sales as an agent consist of sales to customers through purchases from third-
party suppliers in which, depending upon the terms of the transactions, title to the product 
may technically pass to us, but the risk and rewards of inventory ownership remains with 
third-party suppliers as we receive a predetermined service fee under these transactions and 
therefore act predominantly in an agency capacity.  

We have employed the principles detailed in Emerging Issues Task Force, or EITF, Issue No. 99-

19, Reporting Revenue Gross as a Principal Versus Net as an Agent, as guidance in our revenue 
recognition policies. Revenue from sales of third-party ethanol and its co-products is recorded net of costs 
when we are acting as an agent between the customer and supplier and gross when we are a principal to 
the transaction. Several factors are considered to determine whether we are acting as an agent or principal, 
most notably whether we are the primary obligor to the customer, whether we have inventory risk and 
related risk of loss or whether we add meaningful value to the vendor’s product or service. Consideration 
is also given to whether we have latitude in establishing the sales price or have credit risk, or both. 

We record revenues based upon the gross amounts billed to our customers in transactions where 
we act as a producer or a merchant and obtain title to ethanol and its co-products and therefore own the 
product and any related, unmitigated inventory risk for the ethanol, regardless of whether we actually 
obtain physical control of the product. When we act in an agency capacity, we record revenues on a net 
basis, or our predetermined agency fees only, based upon the amount of net revenues retained in excess of 
amounts paid to suppliers. 

Consolidation of Variable Interest Entities. 

We have determined that Front Range meets the definition of a variable interest entity under the 

Financial Accounting Standards Board’s, or FASB’s, Financial Interpretation No., or FIN, 46(R), 
Consolidation of Variable Interest Entities. We have also determined that we are the primary beneficiary 
and we are therefore required to treat Front Range as a consolidated subsidiary for financial reporting 
purposes rather than use equity investment accounting treatment. As a result, we have consolidated the 
financial results of Front Range, including its entire balance sheet with the balance of the noncontrolling 
interest displayed between liabilities and equity, and the income statement after intercompany 

-47- 

 
eliminations with an adjustment for the noncontrolling interest in net income since our acquisition on 
October 17, 2006. Under FIN 46(R), and as long as we are deemed the primary beneficiary of Front 
Range, we must treat Front Range as a consolidated subsidiary for financial reporting purposes. 

Impairment of Intangible and Long-Lived Assets  

Our intangible assets, including goodwill, were derived from the acquisition of our interest in 

Front Range in 2006 and our acquisition of Kinergy in 2005 in connection with the Share Exchange 
Transaction. In accordance with SFAS No. 141, we allocated the respective purchase prices to the 
tangible assets, liabilities and intangible assets acquired based upon their estimated fair values. The excess 
purchase prices over the fair values of the assets acquired and liabilities assumed were recorded as 
goodwill. Our long-lived assets are primarily associated with our ethanol production facilities.  

We account for goodwill and intangible assets with indefinite lives in accordance with SFAS No. 

142. We review these assets at least annually or more frequently if impairment indicators arise. In our 
review, we determine the fair value of these assets using market multiples and discounted cash flow 
modeling and compare it to the net book value of the acquired assets. Any assessed impairments will be 
recorded permanently and expensed in the period in which the impairment is determined. If it is 
determined through our assessment process that any of our intangible assets require impairment charges, 
they will be recorded in the line item other operating charges in the consolidated statements of operations. 
During the year ended December 31, 2008, we performed our annual review of impairment and 
recognized an impairment loss of $87,047,000, the entire amount of our goodwill. We did not recognize 
any impairment losses for the years ended December 31, 2007 and 2006. 

We evaluate impairment of long-lived assets in accordance with SFAS No. 144, Accounting for 

the Impairment or Disposal of Long-Lived Assets. We assess the impairment of long-lived assets, 
including property and equipment and purchased intangibles subject to amortization, when events or 
changes in circumstances indicate that suggest the fair value of assets could be less then their net book 
value. In such event, we assess long-lived assets for impairment by determining their fair value based on 
the forecasted, undiscounted cash flows the assets are expected to generate plus the net proceeds expected 
from the sale of the asset. An impairment loss would be recognized when the fair value is less than the 
related asset’s net book value, and an impairment expense would be recorded in the amount of the 
difference. Forecasts of future cash flows are judgments based on our experience and knowledge of our 
operations and the industries in which we operate. These forecasts could be significantly affected by 
future changes in market conditions, the economic environment, including inflation, deflation and capital 
spending decisions of our customers. During the year ended December 31, 2008, we recognized an 
impairment loss on long-lived assets associated with our Imperial Valley ethanol production facility, 
which construction has been suspended, of $40,900,000. We did not recognize any impairment losses for 
the years ended December 31, 2007 and 2006.  

In 2008, we completed construction of our ethanol production facilities, with installed capacity of 

220 million gallons per year, our goal since 2005. During 2008, we, along with the ethanol industry as a 
whole, experienced significant volatility in the prices of ethanol and corn. Further, we incurred significant 
operating losses in the last half of 2008, which required us to make decisions about operating levels at 
each of our facilities. As a result, beginning in December 2008 and through the first quarter of 2009, we 
reduced our production. Currently we have ceased production at our Madera, Magic Valley and Stockton 
facilities. We continue to operate our Columbia and Front Range facilities. We continue to assess market 
conditions and when appropriate and with adequate available working capital, we plan to bring these 
facilities back to operation.  Given the national Renewable Fuel Standards requirements of ethanol, we 
believe the ethanol industry is viable and will recover in the near term.  

At December 31, 2008, we performed our forecast of expected future cash flows of our facilities 

over their estimated useful lives. Such forecasts of expected future cash flows are heavily dependent upon 

-48- 

 
management’s estimates of future market prices for ethanol, our primary product, and corn, our primary 
production input. As both ethanol and corn costs have fluctuated significantly in the past year, these 
estimates are highly subjective and are management’s best estimates at this time. Management developed 
estimated future prices consistent with market forecasts, including forecasts from the United States 
Department of Agriculture’s long-term forecast. Our forecasts assume that our facilities will only operate 
during periods when market price conditions yield acceptable operating margins. Our analysis resulted in 
total estimated undiscounted cash flows over the expected lives of our plant assets in excess of their 
carrying values. As a result, we did not determine the fair value of our facilities. 

If 2008 average prices for ethanol and corn were used in our forecast rather than management’s 

estimate of future market prices, the projections would have resulted in estimated undiscounted cash 
flows below carrying values which would require us to compute their fair values. If we are required to 
compute the fair value in the future, we may use the work of a qualified valuation specialist who would 
assist us in examining replacement costs, recent transactions between third parties and cash flow that can 
be generated from operations. Given the recent completion of the facilities, replacement cost would likely 
approximate the carrying value of the facilities. However, there have been recent transactions between 
independent parties to purchase plants at prices substantially below the carrying value of the facilities. 
Some of the facilities have been in bankruptcy and may not be representative of transactions outside of 
bankruptcy. Given these circumstances, should management be required to adjust the carrying value of 
the facilities to fair value at some future point in time, the adjustment could be significant and could 
significantly impact our financial position, results of operation and possibly any existing financial debt 
covenants. No adjustment has been made in these financial statements for this uncertainty. 

Derivative Instruments and Hedging Activities 

Our business and activities expose us to a variety of market risks, including risks related to 

changes in commodity prices and interest rates. We monitor and manage these financial exposures as an 
integral part of our risk management program. This program recognizes the unpredictability of financial 
markets and seeks to reduce the potentially adverse effects that market volatility could have on operating 
results. We account for our use of derivatives related to our hedging activities pursuant to SFAS No. 133, 
Accounting for Derivative Instruments and Hedging Activities, in which we recognize all of our derivative 
instruments in our statement of financial position as either assets or liabilities, depending on the rights or 
obligations under the contracts. We have designated and documented contracts for the physical delivery 
of commodity products to and from counterparties as normal purchases and normal sales. Derivative 
instruments are measured at fair value, pursuant to the definition found in SFAS No. 107, Disclosures 
about Fair Value of Financial Instruments. Changes in the derivative’s fair value are recognized currently 
in earnings unless specific hedge accounting criteria are met. Special accounting for qualifying hedges 
allows a derivative’s effective gains and losses to be deferred in accumulated other comprehensive 
income (loss) and later recorded together with the gains and losses to offset related results on the hedged 
item in the statements of operations. Companies must formally document, designate and assess the 
effectiveness of transactions that receive hedge accounting.  

The estimated gains (losses) on our derivatives were as follows (in thousands):  

Commodity futures 
Interest rate options 

Total 

2008 
(2,791) 
1,382 
(1,409) 

$ 

$ 

Year Ended December 31, 
2007 
(5,331) 
(5,590) 
(10,921) 

$ 

$ 

$ 

$ 

2006 

622  
(17) 
605 

-49- 

 
 
 
 
 
 
 
 
Allowance for Doubtful Accounts  

We primarily sell ethanol to gasoline refining and distribution companies and WDG to dairy 

operators and animal feed distributors. We had significant concentrations of credit risk from sales of our 
ethanol as of December 31, 2008, as described in Note 1 to our consolidated financial statements. 
However, those ethanol customers historically have had good credit ratings and historically we have 
collected amounts that were billed to those customers. Receivables from customers are generally 
unsecured. We continuously monitor our customer account balances and actively pursue collections on 
past due balances.  

We maintain an allowance for doubtful accounts for balances that appear to have specific 
collection issues. Our collection process is based on the age of the invoice and requires attempted contacts 
with the customer at specified intervals. If after a specified number of days, we have been unsuccessful in 
our collection efforts, we consider recording a bad debt allowance for the balance in question. We would 
eventually write-off accounts included in our allowance when we have determined that collection is not 
likely. The factors considered in reaching this determination are the apparent financial condition of the 
customer, and our success in contacting and negotiating with the customer.  

During the years ended December 31, 2008, 2007 and 2006, we recognized $2,191,000, $58,000 

and $83,000, respectively, in bad debt expenses as a result of this policy. 

Costs of Start-up Activities 

Start-up activities are defined broadly in Statement of Position 98-5, Reporting on the Costs of 

Start-Up Activities, as those one-time activities related to opening a new facility, introducing a new 
product or service, conducting business in a new territory, conducting business with a new class of 
customer or beneficiary, initiating a new process in an existing facility, commencing some new operation 
or activities related to organizing a new entity. Our start-up activities consist primarily of costs associated 
with new or potential sites for ethanol production facilities. We expense all the costs associated with a 
potential site, until the site is considered viable by management, at which time costs would be considered 
for capitalization based on authoritative accounting literature. These costs are included in selling, general, 
and administrative expenses in our consolidated statements of operations.  

Impact of New Accounting Pronouncements 

In June 2008, the FASB ratified EITF Issue No. 07-5, Determining Whether an Instrument (or 

Embedded Feature) is Indexed to an Entity’s Own Stock. EITF No. 07-5 mandates a two-step process for 
evaluating whether an equity-linked financial instrument or embedded feature is indexed to the entity’s 
own stock. EITF No. 07-5 is effective for us beginning with its first quarter ended March 31, 2009. We do 
not expect the adoption of EITF No. 07-5 will have a material impact on our financial condition or results 
of operations. 

In March 2008, the FASB issued SFAS No. 161, Disclosure about Derivative Instruments and 
Hedging Activities, an amendment of FASB Statement No. 133. SFAS No. 161 changes the disclosure 
requirements for derivative instruments and hedging activities. Entities are required to provide enhanced 
disclosures about (a) how and why an entity uses derivative instruments, (b) how derivative instruments 
and related hedged items are accounted for under Statement No. 133 and its related interpretations and (c) 
how derivative instruments and related hedged items affect an entity’s financial position, financial 
performance and cash flows. SFAS No. 161 is effective for financial statements issued for fiscal years and 
interim periods beginning after November 15, 2008, with early application encouraged. We do not expect 
the adoption of SFAS No. 161 to have a material impact on our financial condition or results of 
operations. 

-50- 

 
In December 2007, the FASB issued SFAS No. 141(R), Business Combinations. SFAS No. 

141(R) retains the fundamental requirements in SFAS No. 141, Business Combinations, that the 
acquisition method of accounting be used for all business combinations and for an acquirer to be 
identified for each business combination. SFAS No. 141(R) requires an acquirer to recognize the assets 
acquired, the liabilities assumed, and any noncontrolling interest in the acquiree at the acquisition date, 
measured at their fair values as of that date, with limited exceptions specified in SFAS No. 141(R). In 
addition, SFAS No. 141(R) requires acquisition costs and restructuring costs that the acquirer expected 
but was not obligated to incur to be recognized separately from the business combination, therefore, 
expensed instead of part of the purchase price allocation. SFAS No. 141(R) will be applied prospectively 
to business combinations for which the acquisition date is on or after the beginning of the first annual 
reporting period beginning on or after December 15, 2008. Early adoption is prohibited. We will adopt 
SFAS No. 141(R) to any business combinations after January 1, 2009. 

In December 2007, the FASB issued SFAS No. 160, Noncontrolling Interests in Consolidated 

Financial Statements, an amendment to ARB No. 51. SFAS No. 160 changes the accounting and reporting 
for minority interests, which will be recharacterized as noncontrolling interests and classified as a 
component of equity. SFAS No. 160 is effective for fiscal years, and interim periods within those fiscal 
years, beginning on or after December 15, 2008. Early adoption is prohibited. Upon adoption on January 
1, 2009, we will present our noncontrolling interest in variable interest entity within stockholders’ equity 
in our consolidated balance sheets. We do not expect the adoption of SFAS No. 160 to have a material 
impact on our financial condition or results of operations.  

Item 7A.  Quantitative and Qualitative Disclosures About Market Risk. 

We are exposed to various market risks, including changes in commodity prices and interest rates. 

Market risk is the potential loss arising from adverse changes in market rates and prices. In the ordinary 
course of business, we enter into various types of transactions involving financial instruments to manage 
and reduce the impact of changes in commodity prices and interest rates. We do not enter into derivatives 
or other financial instruments for trading or speculative purposes.  

Commodity Risk – Cash Flow Hedges 

As part of our risk management strategy, we use derivative instruments to protect cash flows from 

fluctuations caused by volatility in commodity prices for periods of up to twelve months. These hedging 
activities are conducted to protect gross margins to reduce the potentially adverse effects that market 
volatility could have on operating results by minimizing our exposure to price volatility on ethanol sale 
and purchase commitments where the price is to be set at a future date and/or if the contract specifies a 
floating or index-based price for ethanol that is based on either the New York Mercantile Exchange price 
of gasoline or the Chicago Board of Trade price of ethanol. In addition, we hedge anticipated sales of 
ethanol to minimize our exposure to the potentially adverse effects of price volatility. These derivatives 
are designated and documented as SFAS No. 133 cash flow hedges and effectiveness is evaluated by 
assessing the probability of the anticipated transactions and regressing commodity futures prices against 
our purchase and sales prices. Ineffectiveness, which is defined as the degree to which the derivative does 
not offset the underlying exposure, is recognized immediately in cost of goods sold.  

For the year ended December 31, 2008, a loss from ineffectiveness in the amount of $991,000 

and an effective gain in the amount of $566,000 were recorded in cost of goods sold. For the year ended 
December 31, 2007, a gain from ineffectiveness in the amount of $2,832,000 and an effective loss in the 
amount of $1,680,000 were recorded in cost of goods sold. For the year ended December 31, 2006, losses 
from ineffectiveness in the amount of $239,000 and an effective loss in the amount of $438,000 were 
recorded in cost of goods sold. For the year ended December 31, 2006, an effective gain in the amount of 
$1,281,000 was recorded in sales. The notional balance of these derivatives as of December 31, 2008 and 
2007 was $0 and $2,427,000, respectively.  

-51- 

 
Commodity Risk – Non-Designated Derivatives 

As part of our risk management strategy, we use forward contracts on corn, crude oil and 

reformulated blendstock for oxygenate blending gasoline to lock in prices for certain amounts of corn, 
denaturant and ethanol, respectively. These derivatives are not designated under SFAS No. 133 for 
special hedge accounting treatment. The changes in fair value of these contracts are recorded on the 
balance sheet and recognized immediately in cost of goods sold. We recognized losses of $2,395,000 (of 
which $1,131,000 is related to settled non-designated hedges), $6,484,000 and $0 as the change in the fair 
value of these contracts for the year ended December 31, 2008, 2007 and 2006, respectively. The notional 
balances remaining on the contracts as of December 31, 2008 and 2007 were $4,215,000 and 
$29,999,000, respectively. 

Interest Rate Risk 

As part of our interest rate risk management strategy, we use derivative instruments to minimize 

significant unanticipated earnings fluctuations that may arise from rising variable interest rate costs 
associated with existing and anticipated borrowings. To meet these objectives we purchased interest rate 
caps and swaps. The rate for notional balances of interest rate caps ranging from $4,268,000 to 
$18,990,000 is 5.50%-6.00% per annum. The rate for notional balances of interest rate swaps ranging 
from $543,000 to $57,654,000 is 5.01%-8.16% per annum.  

These derivatives are designated and documented as SFAS No. 133 cash flow hedges and 

effectiveness is evaluated by assessing the probability of anticipated interest expense and regressing the 
historical value of the rates against the historical value in the existing and anticipated debt. 
Ineffectiveness, reflecting the degree to which the derivative does not offset the underlying exposure, is 
recognized immediately in other income (expense). For the year ended December 31, 2008, gains from 
ineffectiveness in the amount of $4,999,000, gains from effectiveness in the amount of $75,000 and losses 
from undesignated hedges in the amount of $6,456,000 were recorded in other income (expense). These 
gains and losses resulted from our efforts to restructure our debt financing and therefore, making it not 
probable that the related borrowings would be paid as designated. As such we de-designated certain of 
our interest rate caps and swaps.  

For the year ended December 31, 2007, losses from ineffectiveness in the amount of $4,836,000, 

losses from effectiveness in the amount of $147,000 and losses from undesignated hedges in the amount 
of $606,000 were recorded in other income (expense). For the year ended December 31, 2006, 
ineffectiveness in the amount of $24,000 was recorded in other income (expense).  

We marked all of our derivative instruments to fair value at each period end, except for those 
derivative contracts which qualified for the normal purchase and sale exemption pursuant to SFAS No. 
133.  

-52- 

 
Accumulated Other Comprehensive Income (Loss)  

Accumulated other comprehensive income (loss) relative to derivatives for the year ended 

December 31, 2008 is as follows (in thousands): 

Beginning balance, January 1, 2008 

Net changes 
Less:  Amount reclassified to cost of goods sold 
Less:  Amount reclassified to other income (expense) 

Ending balance, December 31, 2008 

————— 

*Calculated on a pretax basis 

$  

Commodity 
Derivatives 
Gain/(Loss)* 
(455) 
— 
455 
— 
— 

$  

Interest Rate 
Derivatives 
Gain/(Loss)* 

$(1,928) 

(2,637) 
— 
4,565 
— 

$  

The estimated fair values of our derivatives were as follows (in thousands): 

Commodity futures 
Interest rate options 

Total 

Material Limitations 

December 31, 

2008 

(951) 
(6,545) 
(7,496) 

$ 

$ 

2007 
(1,649) 
(7,091) 
(8,740) 

$ 

$ 

The disclosures with respect to the above noted risks do not take into account the underlying 

commitments or anticipated transactions. If the underlying items were included in the analysis, the gains 
or losses on the futures contracts may be offset. Actual results will be determined by a number of factors 
that are not generally under our control and could vary significantly from the factors disclosed.  

We are exposed to credit losses in the event of nonperformance by counterparties on the above 
instruments, as well as credit or performance risk with respect to our hedged customers’ commitments. 
Although nonperformance is possible, we do not anticipate nonperformance by any of these parties.  

Item 8.  Financial Statements and Supplementary Data. 

Reference is made to the financial statements included in this report, which begin at Page F-1. 

Item 9.  Changes in and Disagreements with Accountants on Accounting and Financial Disclosure. 

None. 

Item 9A.  Controls and Procedures.  

We conducted an evaluation under the supervision and with the participation of our management, 

including our Chief Executive Officer and Chief Financial Officer, of the effectiveness of the design and 
operation of our disclosure controls and procedures. The term ―disclosure controls and procedures,‖ as 
defined in Rules 13a-15(e) and 15d-15(e) under the Securities and Exchange Act of 1934, as amended 
(―Exchange Act‖), means controls and other procedures of a company that are designed to ensure that 
information required to be disclosed by the company in the reports it files or submits under the Exchange 
Act is recorded, processed, summarized and reported, within the time periods specified in the Securities 
and Exchange Commission’s rules and forms. Disclosure controls and procedures also include, without 
limitation, controls and procedures designed to ensure that information required to be disclosed by a 

-53- 

 
 
 
 
 
 
 
 
 
company in the reports that it files or submits under the Exchange Act is accumulated and communicated 
to the company’s management, including its principal executive and principal financial officers, or 
persons performing similar functions, as appropriate, to allow timely decisions regarding required 
disclosure. Based on this evaluation, our Chief Executive Officer and Chief Financial Officer concluded 
as of December 31, 2008 that our disclosure controls and procedures were effective at a reasonable 
assurance level.  

Management’s Report on Internal Control Over Financial Reporting  

Our management is responsible for establishing and maintaining adequate internal control over 

financial reporting as defined in Rules 13a-15(f) and 15d-15(f) under the Exchange Act. Our internal 
control over financial reporting is designed to provide reasonable assurance regarding the reliability of 
financial reporting and the preparation of financial statements for external purposes in accordance with 
generally accepted accounting principles. Our internal control over financial reporting includes those 
policies and procedures that: 

(i) 

(ii) 

pertain to the maintenance of records that, in reasonable detail, accurately and fairly 
reflect the transactions and dispositions of our assets; 

provide reasonable assurance that transactions are recorded as necessary to permit 
preparation of financial statements in accordance with generally accepted accounting 
principles, and that our receipts and expenditures are being made only in accordance with 
authorizations of our management and directors; and 

(iii) 

provide reasonable assurance regarding prevention or timely detection of unauthorized 
acquisition, use or disposition of our assets that could have a material affect on our 
financial statements. 

Because of its inherent limitations, internal control over financial reporting may not prevent or 

detect misstatements. Also, projections of any evaluation of effectiveness to future periods are subject to 
the risk that controls may become inadequate because of changes in conditions, or that the degree of 
compliance with the policies or procedures may deteriorate.  

A material weakness is defined by the Public Company Accounting Oversight Board’s Audit 
Standard No. 5 as being a deficiency, or combination of deficiencies, in internal control over financial 
reporting, such that there is a reasonable possibility that a material misstatement of the company’s annual 
or interim financial statements will not be prevented or detected on a timely basis by the company’s 
internal controls.  

Management assessed and evaluated the effectiveness of our internal control over financial 
reporting as of December 31, 2008. Based on the results of management’s assessment and evaluation, our 
Chief Executive Officer and Chief Financial Officer concluded that as of December 31, 2008, our internal 
control over financial reporting was effective.   

In making its assessment of our internal control over financial reporting, management used 
criteria issued by the Committee of Sponsoring Organizations of the Treadway Commission (―COSO‖) in 
its Internal Control—Integrated Framework. Our independent registered public accounting firm, Hein & 
Associates LLP, independently assessed the effectiveness of our internal control over financial reporting. 
Hein & Associates LLP has issued an attestation report concurring with management’s assessment, which 
is included herein. 

-54- 

 
Inherent Limitations on the Effectiveness of Controls 

Management does not expect that our disclosure controls and procedures or our internal control 
over financial reporting will prevent or detect all errors and all fraud. A control system, no matter how 
well conceived and operated, can provide only reasonable, not absolute, assurance that the objectives of 
the control systems are met. Further, the design of a control system must reflect the fact that there are 
resource constraints, and the benefits of controls must be considered relative to their costs. Because of the 
inherent limitations in a cost-effective control system, no evaluation of internal control over financial 
reporting can provide absolute assurance that misstatements due to error or fraud will not occur or that all 
control issues and instances of fraud, if any, have been or will be detected.  

These inherent limitations include the realities that judgments in decision-making can be faulty 
and that breakdowns can occur because of a simple error or mistake. Controls can also be circumvented 
by the individual acts of some persons, by collusion of two or more people, or by management override of 
the controls. The design of any system of controls is based in part on certain assumptions about the 
likelihood of future events, and there can be no assurance that any design will succeed in achieving its 
stated goals under all potential future conditions. Projections of any evaluation of controls effectiveness to 
future periods are subject to risks. Over time, controls may become inadequate because of changes in 
conditions or deterioration in the degree of compliance with policies or procedures.  

Changes in Internal Control over Financial Reporting 

There has been no change in our internal control over financial reporting (as defined in Rules 

13a-15(f) and 15d-15(f) under the Exchange Act) during the most recently completed fiscal quarter that 
has materially affected, or is reasonably likely to materially affect, our internal control over financial 
reporting. 

Attestation Report of Independent Registered Public Accounting Firm 

REPORT OF INDEPENDENT REGISTERED PUBLIC ACCOUNTING FIRM 

To the Audit Committee and Management 
Pacific Ethanol, Inc. 
Sacramento, California 

We have audited Pacific Ethanol, Inc.’s internal control over financial reporting as of December 31, 2008, 
based on criteria established in Internal Control—Integrated Framework issued by the Committee of 
Sponsoring Organizations of the Treadway Commission (COSO). Pacific Ethanol, Inc.’s management is 
responsible for maintaining effective internal control over financial reporting and for its assessment of the 
effectiveness of internal control over financial reporting included in the accompanying Management’s 
Report on Internal Control Over Financial Reporting. Our responsibility is to express an opinion on the 
company's internal control over financial reporting based on our audit. 

We conducted our audit in accordance with the standards of the Public Company Accounting Oversight 
Board (United States). Those standards require that we plan and perform the audit to obtain reasonable 
assurance about whether effective internal control over financial reporting was maintained in all material 
respects. Our audit included obtaining an understanding of internal control over financial reporting, 
assessing the risk that a material weakness exists, and testing and evaluating the design and operating 
effectiveness of internal control based on the assessed risk. Our audit also included performing such other 
procedures as we considered necessary in the circumstances. We believe that our audit provides a 
reasonable basis for our opinion. 

-55- 

 
 
A company's internal control over financial reporting is a process designed to provide reasonable 
assurance regarding the reliability of financial reporting and the preparation of financial statements for 
external purposes in accordance with generally accepted accounting principles. A company's internal 
control over financial reporting includes those policies and procedures that (1) pertain to the maintenance 
of records that, in reasonable detail, accurately and fairly reflect the transactions and dispositions of the 
assets of the company; (2) provide reasonable assurance that transactions are recorded as necessary to 
permit preparation of financial statements in accordance with generally accepted accounting principles, 
and that receipts and expenditures of the company are being made only in accordance with authorizations 
of management and directors of the company; and (3) provide reasonable assurance regarding prevention 
or timely detection of unauthorized acquisition, use, or disposition of the company's assets that could have 
a material effect on the financial statements. 

Because of its inherent limitations, internal control over financial reporting may not prevent or detect 
misstatements. Also, projections of any evaluation of effectiveness to future periods are subject to the risk 
that controls may become inadequate because of changes in conditions, or that the degree of compliance 
with the policies or procedures may deteriorate. 

In  our  opinion,  Pacific  Ethanol,  Inc.  maintained, in  all  material respects,  effective  internal control  over 
financial  reporting  as  of  December  31,  2008,  based  on  criteria  established  in  Internal  Control  — 
Integrated  Framework  issued  by  the  Committee  of  Sponsoring  Organizations  of  the  Treadway 
Commission. 

We also have audited, in accordance with the standards of the Public Company Accounting Oversight 
Board (United States), the consolidated balance sheets of Pacific Ethanol, Inc. as of December 31, 2008 
and 2007, and the related consolidated statements of operations, comprehensive income (loss), 
stockholders’ equity, and cash flows for each of the three years in the period ended December 31, 2008, 
of Pacific Ethanol, Inc. and our report dated March 31, 2009 expressed an unqualified opinion thereon. 

/s/ HEIN & ASSOCIATES LLP 

Irvine, California  
March 31, 2009 

Item 9A(T). Controls and Procedures. 

Not applicable. 

Item 9B.  Other Information. 

None. 

-56- 

 
Item 10.  Directors, Executive Officers and Corporate Governance. 

PART III 

The information under the captions ―Information about our Board of Directors, Board 
Committees and Related Matters‖ and ―Section 16(a) Beneficial Ownership Reporting Compliance,‖ 
appearing in the Proxy Statement, is hereby incorporated by reference.  

Item 11.  Executive Compensation. 

The information under the caption ―Executive Compensation and Related Information,‖ 

appearing in the Proxy Statement, is hereby incorporated by reference.  

Item 12.  Security Ownership of Certain Beneficial Owners and Management and Related 

Stockholder Matters. 

The information under the captions ―Security Ownership of Certain Beneficial Owners and 
Management‖ and ―Equity Compensation Plan Information,‖ appearing in the Proxy Statement, is hereby 
incorporated by reference.  

Item 13.  Certain Relationships and Related Transactions, and Director Independence. 

The information under the captions ―Certain Relationships and Related Transactions‖ and 

―Information about our Board of Directors, Board Committees and Related Matters—Director 
Independence‖ appearing in the Proxy Statement, is hereby incorporated by reference. 

Item 14.  Principal Accounting Fees and Services. 

The information under the caption ―Principal Accounting Fees and Services,‖ appearing in the 

Proxy Statement, is hereby incorporated by reference.  

PART IV 

Item 15.  Exhibits, Financial Statement Schedules. 

(a)(1) Financial Statements 

Reference is made to the financial statements listed on and attached following the Index to 

Consolidated Financial Statements contained on page F-1 of this report. 

(a)(2) Financial Statement Schedules 

None. 

(a)(3) Exhibits 

Reference is made to the exhibits listed on the Index to Exhibits. 

-57- 

 
 
Index to Financial Statements 

Report of Independent Registered Public Accounting Firm ................................................................... F-2 

Consolidated Balance Sheets as of December 31, 2008 and 2007 ......................................................... F-3 

Consolidated Statements of Operations for the Years Ended  

December 31, 2008, 2007 and 2006 ................................................................................................. F-5 

Consolidated Statements of Comprehensive Income (Loss) for the Years Ended 

December 31, 2008, 2007 and 2006 ................................................................................................. F-6 

Consolidated Statements of Stockholders’ Equity for the Years Ended  

December 31, 2008, 2007 and 2006 ................................................................................................. F-7 

Consolidated Statements of Cash Flows for the Years Ended  

December 31, 2008, 2007 and 2006 ................................................................................................. F-10 

Notes to Consolidated Financial Statements ........................................................................................... F-12 

F-1 

 
 
REPORT OF INDEPENDENT REGISTERED PUBLIC ACCOUNTING FIRM  

To the Board of Directors 
Pacific Ethanol, Inc. 
Sacramento, California 

We  have  audited  the  accompanying  consolidated  balance  sheets  of  Pacific  Ethanol,  Inc.  as  of 
December 31,  2008  and  2007,  and  the  related  consolidated  statements  of  operations,  comprehensive 
income  (loss),  stockholders’  equity,  and  cash  flows  for  each  of  the  three  years  in  the  period  ended 
December  31,  2008.  These  consolidated  financial  statements  are  the  responsibility  of  the  Company’s 
management. Our responsibility is to express an opinion on these consolidated financial statements based 
on our audits.  

We conducted our audits in accordance with the standards of the Public Company Accounting Oversight 
Board (United States). Those standards require that we plan and perform the audits to obtain reasonable 
assurance about whether the consolidated financial statements are free of material misstatement. An audit 
includes  examining,  on  a  test  basis,  evidence  supporting  the  amounts  and  disclosures  in  the  financial 
statements. An audit also includes assessing the accounting principles used and significant estimates made 
by management, as well as evaluating the overall presentation of the financial statements. We believe that 
our audits provide a reasonable basis for our opinion.  

In  our  opinion,  the  consolidated  financial  statements  referred  to  above  present  fairly,  in  all  material 
respects, the consolidated financial position of Pacific Ethanol, Inc. at December 31, 2008 and 2007, and 
the results of its operations and its cash flows for each of the three years in the period ended December 
31, 2008, in conformity with accounting principles generally accepted in the United States of America.  

The accompanying financial statements have been prepared assuming that the Company will continue as a 
going concern. As discussed in Note 1, the Company is in default under its loan agreements and has 
entered into forbearance agreements with each of the lenders under which the lenders agreed to forbear 
from exercising their rights until April 30, 2009 absent further defaults. In addition, the Company does 
not currently have sufficient liquidity to meet its anticipated working capital, debt service and other 
liquidity needs in the very near term-term.  These conditions raise substantial doubt about the Company's 
ability to continue as a going concern. Management's plans in regard to these matters are also described in 
Note 1 to the financial statements. The financial statements do not include any adjustments that might 
result from the outcome of this uncertainty. 

We also have audited, in accordance with the standards of the Public Company Accounting Oversight 
Board (United States), Pacific Ethanol, Inc.’s internal control over financial reporting as of December 31, 
2008, based on criteria established in Internal Control—Integrated Framework issued by the Committee 
of Sponsoring Organizations of the Treadway Commission, and our report dated March 31, 2009 
expressed an unqualified opinion on the effectiveness of Pacific Ethanol, Inc’s internal control over 
financial reporting. 

/s/ HEIN & ASSOCIATES LLP 

Irvine, California 
March 31, 2009 

F-2 

 
 
PACIFIC ETHANOL, INC. 
CONSOLIDATED BALANCE SHEETS 
(in thousands) 

ASSETS 

December 31, 

2008 

2007 

Current Assets: 

Cash and cash equivalents 
Investments in marketable securities 
Accounts receivable, net of allowance for doubtful accounts of 

$ 

11,466 
7,780 

$ 

$2,210 and $58, respectively 

Restricted cash 
Inventories 
Prepaid expenses 
Prepaid inventory 
Derivative instruments 
Other current assets 

Total current assets 

23,823 
2,520 
18,408 
2,279 
2,016 
7 
3,592 
71,891 

5,707 
19,353 

28,034 
780 
18,540 
1,498 
3,038 
1,613 
3,630 
82,193 

Property and equipment, net 

530,037 

468,704 

Other Assets: 
Goodwill 
Intangible assets, net 
Other assets 

Total other assets 

Total Assets 

— 
5,630 
9,276 
14,906 

88,168 
6,324 
6,211 
100,703 

$ 

616,834 

$ 

651,600 

The accompanying notes are an integral part of these consolidated financial statements. 
F-3 

 
 
  
 
 
 
 
 
 
 
 
 
 
 
 
 
PACIFIC ETHANOL, INC. 
CONSOLIDATED BALANCE SHEETS (CONTINUED) 
(in thousands, except shares and par value) 

LIABILITIES AND STOCKHOLDERS’ EQUITY 

Current Liabilities: 

Accounts payable – trade  
Accrued liabilities 
Accounts payable and accrued liabilities – construction-related 
Contract retentions 
Other liabilities – related parties  
Current portion – long-term notes payable (including $31,500 and  

$ 

$0 due to a related party, respectively) 

Short-term note payable 
Derivative instruments 

Total current liabilities 

Notes payable, net of current portion (including $0 and $30,000 due 

to a related party, respectively) 

Other liabilities 

Total Liabilities 

Commitments and contingencies (Notes 1, 6, 7 and 13) 

Noncontrolling interest in variable interest entity 

Stockholders’ Equity: 

Preferred stock, $0.001 par value; 10,000,000 shares authorized: 
   Series A: 7,000,000 shares authorized; 0 and 5,315,625 shares 
issued and outstanding as of December 31, 2008 and 2007, 
respectively 

   Series B: 3,000,000 shares authorized; 2,346,152 and 0 shares 
issued and outstanding as of December 31, 2008 and 2007, 
respectively 

Common stock, $0.001 par value; 100,000,000 shares 

authorized; 57,750,319 and 40,606,214 shares issued and 
outstanding as of December 31, 2008 and 2007, 
respectively  

Additional paid-in capital 
Accumulated other comprehensive loss 
Accumulated deficit 

Total stockholders’ equity 

December 31, 

2008 

2007 

$ 

14,034 
12,335 
20,198 
106 
608 

305,420 
— 
7,503 
360,204 

937 

3,497 

364,638 

22,641 
8,526 
55,203 
5,358 
900 

11,098 
6,000 
10,353 
120,079 

151,188 

1,965 

273,232 

42,823 

96,082 

— 

2 

5 

— 

58 
479,034 
— 
(269,721) 
209,373 

41 
402,932 
(2,383) 
(118,309) 
282,286 

Total Liabilities and Stockholders’ Equity 

$ 

616,834 

$ 

651,600 

The accompanying notes are an integral part of these consolidated financial statements. 
F-4 

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
PACIFIC ETHANOL, INC. 
CONSOLIDATED STATEMENTS OF OPERATIONS 
(in thousands, except per share data) 

Net sales (including $1, $6,205 and 

$16,985 to a related party, respectively) 

$ 

Cost of goods sold 
Gross profit (loss) 
Selling, general and administrative expenses 
Impairment of goodwill 
Impairment of asset group  
Income (loss) from operations 
Other income (expense), net 
Income (loss) before noncontrolling 

interest in variable interest entity and 
provision for income taxes 

Noncontrolling  interest  in  variable  interest 

entity 

Loss before provision for income taxes 
Provision for income taxes 
Net loss 
Preferred stock dividends 
Deemed dividend on preferred stock 
Loss available to common stockholders 
Loss per share, basic and diluted 
Weighted-average shares outstanding, basic 

and diluted 

$ 
$ 

 $ 
$ 

Years Ended December 31, 

2008 

2007 

2006 

703,926  $ 
737,331 
(33,405) 
31,796 
87,047 
40,900 
(193,148) 
(6,068) 

$ 

461,513 
428,614 
32,899 
30,822 
— 
— 
2,077 
(6,801) 

226,356 
201,527 
24,829 
24,641 
— 
— 
188 
3,426 

(199,216) 

(4,724) 

3,614 

52,669 
(146,547) 
— 
(146,547)  $ 
(4,104)  $ 
(761) 

(9,676) 
(14,400) 
— 
(14,400) 
(4,200) 
(28) 
(151,412)  $            (18,628) 
(0.47) 

(3.02)  $ 

(3,756) 
(142) 
— 
(142) 
(2,998) 
(84,000) 
(87,140) 
(2.50) 

$ 
$ 

$ 
$ 

50,147 

39,895 

34,855 

The accompanying notes are an integral part of these consolidated financial statements. 
F-5 

 
  
 
 
 
 
 
 
 
 
 
 
 
PACIFIC ETHANOL, INC. 
CONSOLIDATED STATEMENTS OF COMPREHENSIVE INCOME (LOSS) 
(in thousands) 

Net loss 
Other comprehensive income (loss), net of 

tax:  

Cash flow hedges: 

Net change in the fair value of 

derivatives, net of tax  

Unrealized gain (loss) on restricted 

available-for-sale securities 
Comprehensive income (loss) 

For the Years Ended December 31, 

2008 

2007 

2006 

$ 

(146,547)  $ 

(14,400) 

$ 

(142) 

2,383 

(2,579) 

— 
(144,164)  $ 

(349) 
(17,328) 

$ 

$ 

196 

349 
403 

The accompanying notes are an integral part of these consolidated financial statements. 
F-6 

 
  
 
 
 
 
 
 
 
 
 
 
 
 
 
PACIFIC ETHANOL, INC. 
CONSOLIDATED STATEMENTS OF STOCKHOLDERS’ EQUITY  
FOR THE YEARS ENDED DECEMBER 31, 2008, 2007 AND 2006 
(in thousands) 

Preferred Stock 

Common Stock 

Shares 

Amount 

Shares 

Amount 

Additional 
Paid-In 
Capital 

Accumulated 
Other 
Comprehensive 
Income (Loss) 

$  — 

28,874 

$ 

Balances, January 1, 2006 

Cumulative effect adjustment (Note 12) 

Issuance of preferred stock, net of offering 

costs of $1,434 

Beneficial conversion feature on issuance of 
preferred stock and preferred dividend 
declared 

Issuance of common stock for private 

investment in public equity, net of offering 
costs of $7,381 

Exercise of warrants and Accessity options 

Share-based compensation expense – restricted 
stock to employees and directors, net of 
cancellations 

Common stock issued for purchase of 42% 

interest in Front Range 

Fair value of warrants issued for purchase of 

42% interest in Front Range 

Collection of stockholder receivable 

Share-based compensation expense – options 
and warrants to employees and consultants 

Stock issued for exercise of warrants for cash 

Stock issued for cashless exercise of warrants 

Stock issued for exercise of stock options for 

cash 

Comprehensive income 

— 

— 

5,250 

— 

— 

— 

— 

— 

— 

— 

— 

— 

— 

— 

— 

— 

5 

— 

— 

— 

— 

— 

— 

— 

— 

— 

— 

— 

— 

5 

— 

— 

— 

5,497 

71 

894 

2,082 

— 

— 

— 

2,518 

150 

183 

— 

40,269 

$ 

29 

— 

— 

— 

5 

— 

1 

2 

— 

— 

— 

3 

— 

— 

— 

40 

$ 

42,071  $ 

— 

82,561 

84,000 

137,614 

89 

3,047 

30,006 

5,087 

1 

3,201 

8,556 

— 

1,303 

— 

— 

— 

— 

— 

— 

— 

— 

— 

— 

— 

— 

— 

— 

— 

545 

Accumulated 
Deficit 

Total 

$ 

(13,584) 

$  28,516 

1,043 

1,043 

— 

82,566 

(86,998) 

(2,998) 

— 

— 

— 

— 

— 

— 

— 

— 

— 

— 

(142) 

137,619 

89 

3,048 

30,008 

5,087 

1 

3,201 

8,559 

— 

1,303 

403 

Balances, December 31, 2006 

5,250 

$ 

$ 

397,536 

$ 

545 

$ 

(99,681) 

$ 298,445 

The accompanying notes are an integral part of these consolidated financial statements. 
F-7 

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
PACIFIC ETHANOL, INC. 
CONSOLIDATED STATEMENTS OF STOCKHOLDERS’ EQUITY  
FOR THE YEARS ENDED DECEMBER 31, 2008, 2007 AND 2006 (CONTINUED) 
(in thousands) 

Preferred Stock 

Common Stock 

Shares 

Amount 

Shares 

Amount 

Additional 
Paid-In 
Capital 

Accumulated 
Other 
Comprehensive 
Income (Loss) 

Accumulated 
Deficit 

Total 

Balances, January 1, 2007 

5,250 

$ 

5 

40,269 

$ 

40 

$ 

397,536  $ 

545 

$ 

(99,681) 

$  298,445 

Share-based compensation expense – 
restricted stock to employees and 
directors, net of cancellations 

Share-based compensation expense – options 
and warrants to employees and consultants 

Stock issued for exercise of warrants for cash 

Stock issued for exercise of stock options for 

cash 

Beneficial conversion feature on issuance of 
preferred stock and preferred dividends 
declared 

Comprehensive loss 

— 

— 

— 

— 

66 

— 

Balances, December 31, 2007 

5,316 

$ 

— 

— 

— 

— 

— 

— 

5 

(34) 

— 

128 

243 

— 

— 

40,606 

$ 

— 

— 

— 

1 

— 

— 

41 

1,729 

333 

363 

1,893 

1,078 

— 

— 

— 

— 

— 

— 

— 

— 

— 

1,729 

333 

363 

1,894 

(4,228) 

(3,150) 

— 

(2,928) 

(14,400) 

(17,328) 

$ 

402,932 

$  (2,383) 

$  (118,309) 

$ 282,286 

The accompanying notes are an integral part of these consolidated financial statements. 

F-8 

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
PACIFIC ETHANOL, INC. 
CONSOLIDATED STATEMENTS OF STOCKHOLDERS’ EQUITY  
FOR THE YEARS ENDED DECEMBER 31, 2008, 2007 AND 2006 (CONTINUED) 
(in thousands) 

Preferred Stock 

Common Stock 

Shares 

Amount 

Shares 

Amount 

Additional 
Paid-In 
Capital 

Accumulated 
Other 
Comprehensive 
Income (Loss) 

Accumulated 
Deficit 

Total 

Balances, January 1, 2008 

5,316 

$ 

Issuance of preferred stock, net of offering 

costs of $156 

2,346 

5 

2 

— 

40,606 

$ 

41 

$ 

402,932  $  (2,383) 

$  (118,309) 

$  282,286 

Conversion of preferred stock to common 

stock 

Issuance of common, net of offering costs of 

$62 

Share-based compensation expense – restricted 
stock to employees and directors, net of 
cancellations 

Fair value of warrant issued 

Deemed dividend and preferred stock 

dividends declared 

Comprehensive loss 

(5,316) 

(5) 

10,632 

— 

— 

— 

— 

— 

— 

6,000 

— 

— 

— 

— 

2 

512 

— 

— 

— 

57,750 

$ 

— 

10 

6 

1 

— 

— 

— 

58 

45,641 

(5) 

26,642 

2,981 

82 

761 

— 

— 

— 

— 

— 

— 

— 

— 

— 

— 

— 

— 

45,643 

— 

26,648 

2,982 

82 

(4,865) 

(4,104) 

2,383 

(146,547) 

  (144,164) 

$ 

479,034 

$ 

— 

$  (269,721) 

$ 209,373 

Balances, December 31, 2008 

2,346 

$ 

The accompanying notes are an integral part of these consolidated financial statements. 

F-9 

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
PACIFIC ETHANOL, INC. 
CONSOLIDATED STATEMENTS OF CASH FLOWS 
(in thousands) 

For the Years Ended December 31, 
2007 

2006 

2008 

$ 

(146,547)  $ 

(14,400) 

$ 

(142) 

Operating Activities: 

Net loss 
Adjustments to reconcile net loss to  

cash provided by (used in) operating activities: 

Impairment of goodwill 
Impairment of asset group 
Depreciation and amortization of intangibles 
Inventory valuation 
Noncontrolling interest in variable interest entity 
Loss on derivative instruments  
Amortization of deferred financing fees 
Non-cash compensation and consulting expense 
(Gain) loss on disposal of equipment 
Bad debt expense 

Changes in operating assets and liabilities: 

87,047 
40,900 
26,635 
6,415 
(52,669) 
1,138 
2,018 
3,015 
(27) 
2,191 

— 
— 
17,513 
144 
9,676 
6,617 
4,726 
2,225 
81 
58 

— 
— 
4,402 
159 
3,756 
162 
1,069 
6,248 
— 
83 

(20,939) 
(1,570) 
136 
(3,856) 
(1,030) 
(679) 
2,498 
1,559 

$              (8,144) 

Accounts receivable 
Restricted cash 
Notes receivable, related party 
Inventories 
Prepaid expenses and other assets 
Prepaid inventory 
Accounts payable and accrued expenses 
Accounts payable and accrued expenses, related party 
Net cash provided by (used in) operating activities 

2,020 
(1,740) 
— 
(1,596) 
(4,126) 
1,022 
(20,579) 
(292) 

1,230 
787 
— 
(11,089) 
(1,649) 
(1,009) 
10,332 
(8,524) 
$           (55,175)  $             16,718 

Investing Activities: 

Additions to property and equipment 
Proceeds from sales of available-for-sale investments 
Restricted cash designated for construction projects 
Advances on equipment  
Purchases of available-for-sale investments 
Acquisition of 42% interest in Front Range, net of cash 

received 

Proceeds from sale of equipment 

$         (152,635)  $         (210,482) 
19,417 
24,851 
— 
— 

11,573 
— 
— 
— 

$           (82,454) 
— 
(24,851) 
(9,041) 
(28,962) 

— 
206 

— 
— 

(29,514) 
—  

Net cash used in investing activities 

$         (140,856)  $         (166,214) 

$         (174,822) 

Financing Activities: 

Proceeds from borrowings 
Net proceeds from issuance of preferred stock and warrants 
Net proceeds from issuance of common stock and warrants 
Proceeds from exercise of warrants and stock options 
Cash paid for debt issuance costs 
Principal payments paid on borrowings 
Principal payments paid on borrowings (related party) 
Preferred share dividend paid 
Dividend payments to noncontrolling interests 
Receipt of stockholder receivable 

Net cash provided by financing activities 

Net increase (decrease) in cash and cash equivalents 

Cash and cash equivalents at beginning of period 

$          157,322  $          137,725 
— 
— 
2,257 
(10,261) 
(8,737) 
— 
(4,200) 
(5,634) 
— 
$            201,790  $          111,150 

45,643 
26,649 
— 
(1,818) 
(20,787) 
— 
(4,104) 
(1,115) 
— 

5,759 

5,707 

(38,346) 

44,053 

$              1,950 
82,566 
137,619 
9,951 
(3,036) 
(1,005) 
(3,600) 
(1,948) 
— 
1 
$           222,498 

39,532 

4,521 

44,053 

Cash and cash equivalents at end of period 

$ 

11,466  $ 

5,707 

$ 

The accompanying notes are an integral part of these consolidated financial statements. 

F-10 

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
PACIFIC ETHANOL, INC. 
CONSOLIDATED STATEMENTS OF CASH FLOWS (CONTINUED) 
(in thousands) 

For the Years Ended December 31, 
2007 

2006 

2008 

Supplemental Information: 

Interest paid ($9,186, $8,494 and $671 capitalized) 

Non-cash financing and investing activities: 

Preferred stock dividend declared 
Deemed dividend on preferred stock (Note 9) 
Unrealized gain on restricted available-for-sale securities 
Accrued additions to construction in progress 
Accounts payable converted to short-term note payable 
Transaction costs associated with acquisition of 42% 

interest in Front Range 

Issuance of common stock associated with acquisition of 

42% interest in Front Range 

Issuance of warrant associated with acquisition of 42% 

interest in Front Range 

Cumulative effect adjustment (Note 12) 
Capital lease obligations 

$ 

20,602  $ 

9,467 

$ 

966 

—  $ 
761  $ 
—  $ 

1,050 
$ 
28 
$ 
(349) 
$ 
$                — 
$              52,172 
$              1,500  $                6,000 

1,050 
$ 
84,000 
$ 
349 
$ 
$              3,031 
— 
$ 

$ 

$ 

$ 
$ 
$ 

—  $ 

—  $ 

—  $ 
—  $ 
810  $ 

— 

— 

— 
— 
203 

$ 

$ 

$ 
$ 
$ 

304 

30,008 

5,087 
2,134 
— 

The accompanying notes are an integral part of these consolidated financial statements. 
F-11 

 
 
 
 
 
 
 
 
 
 
 
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

1.  ORGANIZATION, SIGNIFICANT ACCOUNTING POLICIES AND RECENT ACCOUNTING 

PRONOUNCEMENTS. 

Organization  and  Business  –  The  consolidated  financial  statements  include  the  accounts  of  Pacific 
Ethanol,  Inc.,  a  Delaware  corporation  (―Pacific  Ethanol‖),  and  all  of  its  wholly-owned  subsidiaries, 
including  Pacific  Ethanol  California,  Inc.,  a  California  corporation  (―PEI  California‖),  Kinergy 
Marketing,  LLC,  an  Oregon  limited  liability  company  (―Kinergy‖)  and  ReEnergy,  LLC,  a  California 
limited  liability  company  (―ReEnergy‖),  and,  effective  October  17,  2006,  the  consolidated  financial 
statements  of  Front  Range  Energy,  LLC,  a  Colorado  limited  liability  company  (―Front  Range‖),  a 
variable-interest entity of which Pacific Ethanol, Inc. owns 42% (collectively, the ―Company‖).   

The Company produces and sells ethanol and its co-products, including wet distillers grain (―WDG‖), and 
provides  transportation,  storage  and  delivery  of  ethanol  through  third-party  service  providers  in  the 
Western  United  States,  primarily  in  California,  Nevada,  Arizona,  Oregon,  Colorado,  Idaho  and 
Washington.  

In September 2008, the Company completed construction of its fourth ethanol plant. The Company’s four 
ethanol plants, which produce ethanol and its co-products, are as follows:  

In addition, the Company owns a 42% interest in Front Range, which owns a plant located in Windsor, 
Colorado,  with  annual  production  capacity  of  up  to  50  million  gallons.  The  Company  also  intends  to 
either  construct  or  acquire additional  production  facilities  as financial resources and  business  prospects 
make the construction or acquisition of these facilities advisable. 

On October 17, 2006, Pacific Ethanol and PEI California entered into an agreement with Eagle Energy, 
LLC (―Eagle Energy‖) to acquire Eagle Energy’s 42% ownership interest in Front Range by paying cash 
and  issuing  common  stock  and  a  warrant  to  purchase  common  stock  of  the  Company  in  a  transaction 
valued  at  $65,612,000.  The  results  of  operations  for  the  year  ended  December  31,  2006  consist  of  the 
Company’s operations for the twelve months and the operations of Front Range from October 18, 2006 
through December 31, 2006. (See Note 2) 

On March 23, 2005, the Company completed a share exchange transaction with the shareholders of PEI 
California  and  the  holders  of  the  membership  interests  of  each  of  Kinergy  and  ReEnergy,  pursuant  to 
which the Company acquired all of the issued and outstanding capital stock of PEI California and all of 
the  outstanding  membership  interests  of  Kinergy  and  ReEnergy  (the  ―Share  Exchange  Transaction‖). 
Immediately prior to the consummation of the Share Exchange Transaction, the Company’s predecessor, 
Accessity  Corp.,  a  New  York  corporation  (―Accessity‖),  reincorporated in  the State  of  Delaware  under 
the  name  ―Pacific  Ethanol,  Inc‖  through  a  merger  of  Accessity  with  and  into  its  then-wholly-owned 
Delaware  subsidiary  named  Pacific  Ethanol,  Inc.,  which  was  formed  for  the  purpose  of  effecting  the 
reincorporation  (the  ―Reincorporation  Merger‖).  In  connection  with  the  Reincorporation  Merger,  the 

F-12 

Facility NameFacility LocationDate Operations BeganEstimated Annual Production Capacity (gallons)StocktonStockton, CASeptember 200860,000,000Magic ValleyBurley, IDApril 200860,000,000ColumbiaBoardman, ORSeptember 200740,000,000MaderaMadera, CAOctober 200640,000,000 
 
 
 
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

shareholders of Accessity became stockholders of the Company and the Company succeeded to the rights, 
properties and assets and assumed the liabilities of Accessity. (See Note 2) 

Basis of Presentation and Liquidity – The consolidated financial statements and related notes have been 
prepared in accordance with accounting principles generally accepted in the United States of America and 
include the accounts of Pacific Ethanol, each of its wholly-owned subsidiaries, and effective October 17, 
2006,  Front  Range.  All  significant  intercompany  accounts  and  transactions  have  been  eliminated  in 
consolidation. 

The Company’s financial statements have been prepared on a going concern basis, which contemplates 
the realization of assets and the satisfaction of liabilities in the normal course of business. As a result of 
ethanol industry conditions that have negatively affected the Company’s business, the Company does not 
currently have sufficient liquidity to meet its anticipated working capital, debt service and other liquidity 
needs in the very near term. The Company has suspended operations at three of its four wholly-owned 
ethanol production facilities due to market conditions and in an effort to conserve capital. The Company 
has also taken and expects to take additional steps to preserve liquidity. However, despite any additional 
cost-saving steps the Company may take, the Company believes that it has sufficient working capital to 
continue operations only until approximately April 30, 2009 at the latest unless it successfully restructures 
its debt, experiences a significant improvement in margins and obtains other sources of liquidity.  

The  Company  is  in  default  under  its  construction-related  term  loans  in  the  aggregate  amount  of 
approximately  $246.5  million  and  under  Kinergy’s  revolving  line  of  credit  as  well  as  $31.5  million  in 
notes  payable  to  another  lender.  In  February  2009,  the  Company  entered  into  forbearance  agreements 
with each of the lenders, which were amended in March 2009, under which the lenders agreed to forbear 
from  exercising  their  rights  until  April  30,  2009  absent  further  defaults.  The  Company  classified  these 
debt obligations as current liabilities in its consolidated financial statements and of and for the year ended 
December  31,  2008.  Although  the  Company  is  actively  pursuing  a  number  of  alternatives,  including 
seeking to restructure its debt and seeking to raise additional debt or equity financing, or both, there can 
be  no  assurance  that  the  Company  will  be  successful.  If  the  Company  cannot  restructure  its  debt  and 
obtain sufficient liquidity in the very near term, it may need to seek protection under the U.S. Bankruptcy 
Code. 

The  consolidated  financial  statements  do  not  include  any  other  adjustments  that  might  result  from  the 
outcome of these negotiations. (See Note 7.) 

Cash  and  Cash  Equivalents  –  The  Company  considers  all  highly-liquid  investments  with  an  original 
maturity of three months or less to be cash equivalents.  

Investments in Marketable Securities – The Company’s short-term investments consists of amounts held 
in money market portfolio funds and United States Treasury Securities, which represents funds available 
for  current  operations.  In  accordance  with  Statement  of  Financial  Accounting  Standards  (―SFAS‖)  No. 
115, Accounting for Certain Investments in Debt and Equity Securities, these short-term investments are 
classified  as  available-for-sale  and  are  carried  at  their  fair  market  value.  These  securities  have  stated 
maturities beyond three months but were priced and traded as short-term instruments. Available-for-sale 
securities are marked-to-market based on quoted market values of the securities, with the unrealized gains 
and  losses,  net  of  tax,  reported  as  a  component  of  accumulated  other  comprehensive  income  (loss). 
Realized gains and losses on sales of available-for-sale securities are computed based upon the initial cost 
adjusted for any other-than-temporary declines in fair value. The cost of investments sold is determined 
on the specific identification method.  

F-13 

 
 
  
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

Accounts Receivable and Allowance for Doubtful Accounts – Trade accounts receivable are presented at 
face  value,  net  of  the  allowance  for  doubtful accounts.  The  Company  sells  ethanol to  gasoline refining 
and  distribution  companies  and  WDG to  dairy  operators and  animal  feed  distributors  generally  without 
requiring  collateral.  Due  to  a  limited  number  of  ethanol  customers,  the  Company  had  significant 
concentrations of credit risk from sales of ethanol as of December 31, 2008 and 2007, as described below.  

The  Company  maintains  an  allowance  for  doubtful  accounts  for  balances  that  appear  to  have  specific 
collection issues. The collection process is based on the age of the invoice and requires attempted contacts 
with  the  customer  at  specified  intervals.  If,  after  a  specified  number  of  days,  the  Company  has  been 
unsuccessful  in  its  collection  efforts,  a  bad  debt  allowance  is  recorded  for  the  balance  in  question. 
Delinquent  accounts  receivable  are  charged  against  the  allowance  for  doubtful  accounts  once 
uncollectibility  has  been  determined.  The  factors  considered  in  reaching  this  determination  are  the 
apparent  financial  condition  of  the  customer  and  the  Company’s  success  in  contacting  and  negotiating 
with the customer. If the financial condition of the Company’s customers were to deteriorate, resulting in 
an impairment of ability to make payments, additional allowances may be required. 

The allowance  for  doubtful  accounts  was  $2,210,000  and  $58,000 as  of  December  31,  2008  and  2007, 
respectively. The Company recorded bad debt expense of $2,191,000, $58,000 and $83,000 for the years 
ended  December  31,  2008,  2007  and  2006,  respectively.  The  Company  does  not  have  any  off-balance 
sheet credit exposure related to its customers.  

Concentrations of Credit Risk – Credit risk represents the accounting loss that would be recognized at the 
reporting date if counterparties failed completely to perform as contracted. Concentrations of credit risk, 
whether on- or off-balance sheet, that arise from financial instruments exist for groups of customers or 
counterparties  when  they  have  similar  economic  characteristics  that  would  cause  their  ability  to  meet 
contractual  obligations  to  be  similarly  affected  by  changes  in  economic  or  other  conditions  described 
below. 

Financial  instruments  that  subject  the  Company  to  credit  risk  consist  of  cash  balances  maintained  in 
excess  of  federal  depository  insurance  limits  and  accounts  receivable,  which  have  no  collateral  or 
security.  Some  of  the  accounts  maintained  by  the  Company  at  financial  institutions  are  insured  by  the 
Federal  Deposit  Insurance  Corporation.  The  Company’s  uninsured  balance  was  $10,422,000  and 
$8,460,000  as  of  December  31,  2008  and  2007,  respectively.  The  Company  has  not  experienced  any 
losses in such accounts and believes that it is not exposed to any significant risk of loss of cash. 

The Company sells fuel-grade ethanol to gasoline refining and distribution companies. The Company had 
sales from customers representing 10% or more of total net sales as follows:  

Years Ended December 31, 
2007 

2008 

2006 

Customer A 
Customer B 
Customer C 

19% 
13% 
3% 

16% 
16% 
6% 

12% 
9% 
13% 

As  of  December  31,  2008,  the  Company  had  receivables  from  these  customers  of  approximately 
$6,829,000, representing 29% of total accounts receivable. As of December 31, 2007, the Company had 
receivables  from  these  customers  of  approximately  $4,983,000,  representing  18%  of  total  accounts 
receivable.  

F-14 

 
 
  
 
 
 
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

The  Company  purchases  fuel-grade  ethanol  and  corn,  its  largest  cost  component  in  producing  ethanol, 
from  its  suppliers.  The  Company  had  purchases  from  ethanol  and  corn  suppliers  representing  10%  or 
more of total purchases in the purchase and production of ethanol as follows:  

Supplier A 
Supplier B 
Supplier C 
Supplier D 
Supplier E 

Years Ended December 31, 
2007 

2008 

27% 
22% 
5% 
5% 
0% 

14% 
20% 
9% 
9% 
13% 

2006 

6% 
0% 
17% 
11% 
22% 

Restricted  Cash  –  Current  Asset  –  The  restricted  cash  balance  of  $2,520,000  and  $780,000  as  of 
December  31,  2008  and  2007,  respectively,  was  the  balance  of  deposits  held  at  the  Company’s  trade 
broker in connection with trading instruments entered into as part of the Company’s hedging strategy.  

Inventories – Inventories consist primarily of bulk ethanol, unleaded fuel and corn, and are valued at the 
lower-of-cost-or-market, with cost determined on a first-in, first-out basis. Inventory balances consisted 
of the following (in thousands): 

Raw materials 
Work in progress 
Finished goods 
Other 
  Total 

December 31, 

2008 

9,000 
1,895 
5,994 
1,519 
18,408 

$ 

$ 

2007 

3,647 
1,809 
12,064 
1,020 
18,540 

$ 

$ 

Property and Equipment – Property and equipment are stated at cost. Depreciation is computed using the 
straight-line method over the following estimated useful lives: 

Buildings  
Facilities and plant equipment 
Other equipment, vehicles and furniture 
Water rights 

40 years 
10 – 25 years 
5 – 10 years 
99 years 

The  cost  of  normal  maintenance  and  repairs  is  charged  to  operations  as  incurred.  Significant  capital 
expenditures that increase the life of an asset are capitalized and depreciated over the estimated remaining 
useful  life  of  the  asset.  The  cost  of  fixed  assets  sold,  or  otherwise  disposed  of,  and  the  related 
accumulated  depreciation  or  amortization  are  removed  from  the  accounts,  and  any  resulting  gains  or 
losses are reflected in current operations. 

Goodwill  –  Goodwill  represents  the  excess  of  cost  of  an  acquired  entity  over  the  net  of  the  amounts 
assigned  to  net  assets  acquired  and  liabilities  assumed.  The  Company  accounts  for  its  goodwill  in 
accordance with SFAS No. 142, Goodwill and Other Intangible Assets, which requires an annual review 
for  impairment,  or  more  frequently  if  indications  of  impairment  arise.  This  review  includes  the 
determination  of  each  reporting  unit’s  fair  value  using  market  multiples  and  discounted  cash  flow 
modeling. The Company is operating as a single-segmented, single-reporting unit. The estimates of future 
cash  flows  are  judgments  based  on  management’s  experience  and  knowledge  of  the  Company’s 
operations  and  the  industries  in  which  the  Company  operates.  These  estimates  can  be  significantly 

F-15 

 
 
  
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

affected  by  future  changes  in  market  conditions,  the  economic  environment,  including  inflation,  and 
capital spending decisions of the Company’s customers. Any assessed impairments will be permanent and 
expensed  in  the  period  in  which  the  impairment  is  determined.  If  the  Company  determines  through  its 
assessment process that any of its goodwill requires impairment charges, the charges will be recorded in 
selling, general and administrative expenses in the consolidated statements of operations. 

Intangible Assets – Intangible assets have been identified as assets with definite lives. The Company will 
amortize  these  assets  using  the  straight-line  method  over  their  established  lives,  generally  2-10  years. 
Additionally, the Company will test these assets with established lives for impairment if conditions exist 
that  indicates  that  carrying  values  may  not  be  recoverable.  Possible  conditions  leading  to  the 
unrecoverability  of  these  assets  include  changes  in  market  conditions,  changes  in  future  economic 
conditions  or  changes  in  technological  feasibility  that  impact  the  Company’s  assessments  of  future 
operations. If the Company determines that an impairment charge is needed, the charge will be recorded 
in selling, general and administrative expenses in the consolidated statements of operations. 

Deferred  Financing  Costs  –  Deferred  financing  costs,  which  are  included  in  other  assets,  are  costs 
incurred to obtain debt financing, including all related fees, and are amortized as interest expense over the 
term of the related financing using the straight-line method which approximates the interest rate method. 
To  the  extent  these  fees  relate  to  facility  construction,  a  portion  is  capitalized  with  the  related  interest 
expense into construction in progress until such time as the facility is placed into operation. 

Derivative Instruments and Hedging Activities – Beginning in 2006, the Company implemented a policy 
to  minimize  its  exposure  to  commodity  price  risk  associated  with  certain  anticipated  commodity 
purchases  and  sales  and  interest  rate  risk  associated  with  anticipated  corporate  borrowings  by  using 
derivative  instruments. The  Company  accounts for  its  derivative  transactions in  accordance  with  SFAS 
No.  133,  Accounting  for  Derivative  Instruments  and  Hedging  Activities,  as  amended  and  interpreted. 
Derivative  transactions,  which  can  include  forward  contracts  and  futures  positions  on  the  New  York 
Mercantile Exchange and the Chicago Board of Trade and interest rate caps and swaps are recorded on 
the balance sheet as assets and liabilities based on the derivative’s fair value. Changes in the fair value of 
the derivative contracts are recognized currently in income unless specific hedge accounting criteria are 
met.  If  derivatives  meet  those  criteria,  effective  gains  and  losses  are  deferred  in  accumulated  other 
comprehensive income (loss) and later recorded together with the hedged item in income. For derivatives 
designated  as  a  cash  flow  hedge,  the  Company  formally  documents  the  hedge  and  assesses  the 
effectiveness with associated transactions. The Company has designated and documented contracts for the 
physical  delivery  of  commodity  products  to  and  from  counterparties  as  normal  purchases  and  normal 
sales. 

Consolidation of Variable-Interest Entities – In January 2003, the Financial Accounting Standards Board 
(―FASB‖) issued FASB Interpretation No. (―FIN‖) 46, Consolidation of Variable Interest Entities, and in 
December  2003,  amended  it  by  issuing  FIN  46(R).  FIN  46(R)  addresses  consolidation  by  business 
enterprises of variable interest entities that either: (i) do not have sufficient equity investment at risk to 
permit  the  entity  to  finance  its  activities  without  additional  subordinated  financial  support,  or  (ii)  have 
equity investors that lack an essential characteristic of a controlling financial interest. Under FIN 46(R), 
the  primary  beneficiary  of  a  variable  interest  entity  is  the  party  that  absorbs  a  majority  of  the  entity’s 
expected losses, receives a majority of its expected residual returns, or both, as a result of holding variable 
interests, which can be ownership, contractual, or other financial interests that change with the fair value 
of the entity’s net assets.  

The Company has determined that Front Range meets the definition of a variable interest entity under FIN 
46(R). The Company has also determined that it is the primary beneficiary and is therefore required to 

F-16 

 
 
  
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

treat  Front  Range  as  a  consolidated  subsidiary  for  financial  reporting  purposes  rather  than  use  equity 
investment  accounting  treatment.  As  a  result,  the  Company  consolidates  the  financial  results  of  Front 
Range, including its entire balance sheet with the balance of the noncontrolling interest displayed between 
liabilities  and  equity,  and the  income  statement  after intercompany  eliminations with an  adjustment for 
the noncontrolling interest in net income, in each case since its acquisition on October 17, 2006. Under 
FIN 46(R), and as long as the Company is deemed the primary beneficiary of Front Range, it must treat 
Front Range as a consolidated subsidiary for financial reporting purposes. 

Revenue Recognition – The Company recognizes revenue when it is realized or realizable and earned. The 
Company  considers  revenue  realized  or  realizable  and  earned  when  it  has  persuasive  evidence  of  an 
arrangement, delivery has occurred, the sales price is fixed or determinable, and collection is reasonably 
assured in conformity with the Securities and Exchange Commission’s (―Commission‖) Staff Accounting 
Bulletin (―SAB‖) No. 104, Revenue Recognition.  

The  Company  derives  revenue  primarily  from  sales  of  ethanol  and  related  co-products.  The  Company 
recognizes  revenue  when  title  transfers  to  its  customers,  which  is  generally  upon  the  delivery  of  these 
products  to  a  customer’s  designated  location.  These  deliveries  are  made  in  accordance  with  sales 
commitments and related sales orders entered into with customers either verbally or in written form. The 
sales  commitments  and  related  sales  orders  provide  quantities,  pricing  and  conditions  of  sales.  In  this 
regard, the Company engages in three basic types of revenue generating transactions: 

 

 

 

As a producer. Sales as a producer consist of sales of the Company’s inventory produced at 
its ethanol production facilities. 

As  a  merchant.  Sales  as  a  merchant  consist  of  sales  to  customers  through  purchases  from 
third-party  suppliers  in  which  the  Company  may  or  may  not  obtain  physical  control  of  the 
ethanol  or  co-products,  though  ultimately  titled  to  the  Company,  in  which  shipments  are 
directed  from  the  Company’s  suppliers  to  its  terminals  or  direct  to  its  customers  but  for 
which the Company accepts the risk of loss in the transactions. 

As an agent. Sales as an agent consist of sales to customers through purchases from third-
party  suppliers  in  which,  depending  upon  the  terms  of  the  transactions,  title  to  the  product 
may  technically  pass  to  the  Company,  but  the  risks  and  rewards  of  inventory  ownership 
remains  with  third-party  suppliers  as  the  Company  receives  a  predetermined  service  fee 
under these transactions and therefore acts predominantly in an agency capacity.  

The  Company  records  revenues  based  upon  the  gross  amounts  billed  to  its  customers  in  transactions 
where the Company acts as a producer or a merchant and obtains title to ethanol and its co-products and 
therefore  owns  the  product  and  any  related,  unmitigated  inventory  risk  for  the  ethanol,  regardless  of 
whether the Company actually obtains physical control of the product.  

When the Company acts in an agency capacity, it records revenues based on the principles of Emerging 
Issues Task Force (―EITF‖) Issue No. 99-19, Reporting Revenue Gross as a Principal Versus Net as an 
Agent. The Company recognizes revenue on a net basis or recognizes its predetermined agency fees only, 
based  upon  the  amount  of  net  revenues  retained in  excess  of  amounts  paid  to  suppliers.  Revenue  from 
sales of third-party ethanol and its co-products is recorded net of costs when the Company is acting as an 
agent between the customer and supplier and gross when the Company is a principal to the transaction. 
Several factors are considered to determine whether the Company is acting as an agent or principal, most 
notably whether the Company is the primary obligor to the customer, whether the Company has inventory 

F-17 

 
 
  
 
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

risk  and  related  risk  of  loss.  Consideration  is  also  given  to  whether  the  Company  has  latitude  in 
establishing the sales price or has credit risk, or both. 

Shipping  and  Handling  Costs  –  Shipping  and  handling  costs  are  classified  as  a  component  of  cost  of 
goods sold in the accompanying consolidated statements of operations. 

Costs  of  Start-Up  Activities  –  Start-up  activities  are  defined  broadly  in  American  Institute  of  Certified 
Public  Accountants  Statement  of  Position  98-5,  Reporting  on  the  Costs  of  Start-Up  Activities,  as  those 
one-time  activities  related  to  opening  a  new  facility,  introducing  a  new  product  or  service,  conducting 
business in a new territory, conducting business with a new class of customer or beneficiary, initiating a 
new process in an existing facility, commencing some new operation or activities related to organizing a 
new entity. The Company’s start-up activities consist primarily of costs associated with new or potential 
sites for ethanol production facilities. All the costs associated with a potential site are expensed, until the 
site is considered viable by management, at which time costs would be considered for capitalization based 
on  authoritative  accounting  literature.  These  costs  are  included  in  selling,  general  and  administrative 
expenses in the consolidated statements of operations. 

Stock-Based Compensation – On January 1, 2006, the Company adopted SFAS No. 123(R), Share-Based 
Payments. SFAS No. 123(R) requires a public entity to measure the cost of employee services received in 
exchange for the award of equity instruments based on the fair value  of the award on the date of grant. 
The expense is to be recognized over the period during which an employee is required to provide services 
in exchange for the award. 

Impairment  of  Long-Lived  Assets  –  The  Company  evaluates  impairment  of  long-lived  assets  in 
accordance with SFAS No. 144,  Accounting for the Impairment or Disposal of Long-Lived Assets. The 
Company assesses the impairment of long-lived assets, including property and equipment and purchased 
intangibles subject to amortization, when events or changes in circumstances indicate that the fair value of 
assets could be less then their net book value. In such event, the Company assesses long-lived assets for 
impairment by determining their fair value based on the forecasted, undiscounted cash flows the assets are 
expected to generate plus the net proceeds expected from the sale of the asset. An impairment loss would 
be  recognized  when  the  fair  value  is  less  than  the  related  asset’s  net  book  value,  and  an  impairment 
expense would be recorded in the amount of the difference. Forecasts of future cash flows are judgments 
based  on  the  Company’s  experience  and  knowledge  of  its  operations  and  the  industries  in  which  it 
operates.  These  forecasts  could  be  significantly  affected  by  future  changes  in  market  conditions,  the 
economic environment, including inflation, and capital spending decisions of the Company’s customers.  

Income  Taxes  –  Income  taxes  are  accounted  for  under  SFAS  No.  109,  Accounting  for  Income  Taxes. 
Under  SFAS  No.  109,  deferred  tax  assets  and  liabilities  are  determined  based  on  differences  between 
financial  reporting  and  tax  basis  of  assets  and  liabilities,  and  are  measured  using  enacted  tax  rates  and 
laws that are expected to be in effect when the differences reverse. Valuation allowances are established 
when necessary to reduce deferred tax assets to the amounts expected to be realized.  

Income (Loss) Per Share – The Company computes income (loss) per common share in accordance with 
the provisions of SFAS No. 128, Earnings Per Share. SFAS No. 128 requires companies with complex 
capital  structures  to  present  basic  and  diluted  earnings  per  share.  Basic  income  (loss)  per  share  is 
computed on the basis of the weighted-average number of shares of common stock outstanding during the 
period. Preferred dividends are deducted from net income and are considered in the calculation of income 
(loss) available to common stockholders in computing basic income (loss) per share. In periods in which 
there is a loss available to common stockholders, diluted income per share is equal to basic income per 
share.  

F-18 

 
 
  
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

The following table computes basic and diluted net loss per share (in thousands, except per share data): 

Years Ended December 31, 

2008 

2007 

2006 

Numerator (basic and diluted): 

Net loss 

Preferred stock dividends 

Deemed dividend on preferred stock 

$ 

(146,547) 

$ 

(14,400) 

$ 

(4,104) 

(761) 

(4,200) 

(28) 

Loss available to common stockholders 

(151,412) 

(18,628) 

(142) 

(2,998) 

(84,000) 

(87,140) 

Denominator: 
  Weighted-average common shares 
    outstanding – basic and diluted 

Loss per share – basic and diluted 

50,147 

39,895 

$ 

(3.02)    

$ 

(0.47)     $ 

34,855 

(2.50)   

There  were  an  aggregate  of  10,930,000,  10,750,000  and  14,568,000  of  potentially  dilutive  shares  from 
stock options, common stock warrants and convertible securities outstanding as of December 31, 2008, 
2007  and  2006,  respectively.  These  options,  warrants  and  convertible  securities were  not  considered in 
calculating  diluted  loss  per  common  share  for  the  years  ended  December  31,  2008,  2007  and  2006,  as 
their effect would be anti-dilutive. As a result, for each of the years ended December 31, 2008, 2007 and 
2006, the Company’s basic and diluted loss per share are the same. 

Financial Instruments – SFAS No. 107, Disclosures about Fair Value of Financial Instruments, requires 
all entities to disclose the fair value of financial instruments, both assets and liabilities recognized and not 
recognized on the balance sheet, for which it is practicable to estimate fair value. The carrying value of 
cash  and  cash  equivalents,  marketable  securities,  accounts  receivable,  accounts  payable  and  accrued 
expenses are reasonable estimates of their fair value because of the short maturity of these items. Except 
as  noted  below,  the  Company  believes  the  carrying  values  of  its  notes  payable  and  long-term  debt 
approximate fair value because the interest rates on these instruments are variable.  

The Company believes the carrying values and estimated fair values of its notes payable and long-term 
debt are as follows at December 31, 2008 (in thousands):   

Carrying Value 

Estimated Fair Value 

$  

  306,357 

$      139,568 

The Company estimated the fair value of its notes payable and long-term debt associated with its Debt 
Financing currently in forbearance consistent with its related interest rate caps and swaps. As discussed in 
Note  14,  the  Company  applied  a  40%  standard  market  recovery  rate  to  its  caps  and  swaps,  and 
accordingly, applied the rate to its related debt carrying value. For all other notes payable and long-term 
debt,  fair  value approximates  carrying  value.  As  of  December  31,  2008  and  2007,  the  fair  value  of  the 
Company’s other financial instruments approximated their carrying values. 

Fair  Value  Measurements  –  On  January  1,  2008,  the  Company  adopted  SFAS  No.  157  Fair  Value 
Measurements, which defines a single definition of fair value, together with a framework for measuring it, 
and requires additional disclosure about the use of fair value to measure assets and liabilities. SFAS No. 
157 is applicable whenever another accounting pronouncement requires or permits assets and liabilities to 
be  measured  at  fair  value,  but  does  not  require  any  new  fair  value  measurement.  The  SFAS  No.  157 

F-19 

 
 
  
 
 
 
 
 
 
 
 
 
 
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

requirements  for  certain  nonfinancial  assets  and  liabilities  have  been  deferred  until  the  first  quarter  of 
2009  in  accordance  with  FASB  Staff  Position  157-2.  The  adoption  of  SFAS  No.  157  did  not  have  a 
material impact on the Company’s financial position, results of operations or cash flows. See Note 14. 

On  January  1,  2008,  the  Company  also  adopted  SFAS  No.  159,  The  Fair  Value  Option  for  Financial 
Assets  and  Financial  Liabilities.  SFAS  No.  159  permits  an  entity  to  irrevocably  elect  fair  value  on  a 
contract-by-contract  basis as  the initial  and  subsequent  measurement  attribute for  many  financial  assets 
and liabilities and certain other items including insurance contracts. Entities electing the fair value option 
would be required to recognize changes in fair value in earnings and to expense upfront costs and fees 
associated with the item for which the fair value option is elected. The adoption of SFAS No. 159 did not 
have a material impact on the Company’s financial position, results of operations or cash flows for the 
year ended December 31, 2008. 

Estimates and Assumptions – The preparation of the consolidated financial statements in conformity with 
accounting principles generally accepted in the United States requires management to make estimates and 
assumptions that affect the reported amounts of assets and liabilities and disclosure of contingent assets 
and liabilities at the date of the financial statements and the reported amounts of revenues and expenses 
during  the  reporting  period.  Significant  estimates  are  required  as  part  of  determining  allowance  for 
doubtful  accounts,  estimated  lives  of  property  and  equipment  and  intangibles,  goodwill  and  long-lived 
asset impairments, valuation allowances on deferred income taxes, and the potential outcome of future tax 
consequences of events recognized in the Company’s financial statements or tax returns. Actual results 
and outcomes may materially differ from management’s estimates and assumptions.  

Reclassifications  –  Certain  prior  year  amounts  have  been  reclassified  to  conform  to  the  current 
presentation. Such reclassification had no effect on the net loss reported in the consolidated statements of 
operations.  

Recently  Issued  Accounting  Pronouncements  –  In  June  2008,  the  FASB  ratified  Emerging  Issues  Task 
Force (―EITF‖) Issue No. 07-5, Determining Whether an Instrument (or Embedded Feature) is Indexed to 
an  Entity’s  Own  Stock.  EITF  No.  07-5  mandates  a  two-step  process  for  evaluating  whether  an  equity-
linked financial instrument or embedded feature is indexed to the entity’s own stock. EITF No. 07-5 is 
effective for the Company beginning with its first quarter ended March 31, 2009. The Company does not 
expect the adoption of EITF No. 07-5 will have a material impact on its financial condition or results of 
operations. 

In March 2008, the FASB issued SFAS No. 161, Disclosure about Derivative Instruments and Hedging 
Activities, an amendment of FASB Statement No. 133. SFAS No. 161 changes the disclosure requirements 
for  derivative  instruments  and  hedging  activities.  Entities  are  required  to  provide  enhanced  disclosures 
about (a) how and why an entity uses derivative instruments, (b) how derivative instruments and related 
hedged  items  are  accounted  for  under  Statement  No.  133  and  its  related  interpretations  and  (c)  how 
derivative  instruments  and  related  hedged  items  affect  an  entity’s  financial  position,  financial 
performance and cash flows. SFAS No. 161 is effective for financial statements issued for fiscal years and 
interim  periods  beginning  after  November  15,  2008,  with  early  application  encouraged.  The  Company 
does  not  expect  the  adoption  of  SFAS  No.  161  to  have  a  material  impact  to  its  financial  condition  or 
results of operations. 

In  December  2007,  the  FASB  issued  SFAS  No.  141(R),  Business  Combinations.  SFAS  No.  141(R) 
retains  the  fundamental  requirements  in  SFAS  No.  141,  Business  Combinations,  that  the  acquisition 
method of accounting be used for all business combinations and for an acquirer to be identified for each 
business  combination.  SFAS  No.  141(R)  requires  an  acquirer  to  recognize  the  assets  acquired,  the 

F-20 

 
 
  
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

liabilities  assumed,  and  any  noncontrolling  interest  in  the  acquiree  at  the  acquisition  date,  measured  at 
their fair values as of that date, with limited exceptions specified in SFAS No. 141(R). In addition, SFAS 
No.  141(R)  requires  acquisition  costs  and  restructuring  costs  that  the  acquirer  expected  but  was  not 
obligated to incur to be recognized separately from the business combination, therefore, expensed instead 
of  part  of  the  purchase  price  allocation.  SFAS  No.  141(R)  will  be  applied  prospectively  to  business 
combinations  for  which  the  acquisition  date  is  on  or  after  the  beginning  of  the  first  annual  reporting 
period beginning on or after December 15, 2008. Early adoption is prohibited. The Company will adopt 
SFAS No. 141(R) to any business combinations after January 1, 2009. 

In December 2007, the FASB issued SFAS No. 160, Noncontrolling Interests in Consolidated Financial 
Statements,  an  amendment  to  ARB  No.  51.  SFAS  No.  160  changes  the  accounting  and  reporting  for 
minority interests, which will be recharacterized as noncontrolling interests and classified as a component 
of  equity.  SFAS  No.  160  is  effective  for  fiscal  years,  and  interim  periods  within  those  fiscal  years, 
beginning  on  or  after  December  15,  2008.  Early  adoption  is  prohibited.  Upon  adoption  on  January  1, 
2009,  the  Company  will  present  its  Noncontrolling  Interest  in  Variable  Interest  Entity  within 
Stockholders’  Equity  in  its  consolidated  balance  sheets.  The  Company  does  not  expect  the  adoption  of 
SFAS No. 160 to have a material impact to its financial condition or results of operations. 

2.  ACQUISITION OF INTEREST IN FRONT RANGE. 

On October 17, 2006, the Company entered into a Membership Interest Purchase Agreement with Eagle 
Energy to acquire Eagle Energy’s 42% interest in Front Range. Front Range was formed on July 29, 2004 
to  construct  and  operate  a 50  million  gallon  dry  mill  ethanol  plant in  Windsor,  Colorado.  Front  Range 
began producing ethanol in June 2006.  

As  consideration  for  the  acquisition  of  Eagle  Energy’s  interest  in  Front  Range,  the  Company  paid  to 
Eagle Energy $30,000,000 in cash, 2,081,888 shares of common stock valued at $30,008,000 under the 
valuation provisions of the agreement and a warrant to purchase up to 693,963 shares of common stock at 
an  exercise  price  of  $14.41  per  share.  The  warrant  expired  unexercised  on  October  17,  2007.  The 
Company utilized EITF Issue No. 99-12, Determination of the Measurement Date for the Market Price of 
Acquirer  Securities  Issued  in  a  Purchase  Business  Combination,  to  establish  the  market  price  of  the 
securities issued in the transaction where the measurement date was determined to be the date at which 
the number of acquirer shares and the amount of consideration becomes fixed and determinable without 
subsequent revision. In the transaction, the measurement date on which the shares to be issued became 
fixed  and  determinable  was  October  17,  2006  and  the  common  stock  valuation  price  was  $14.41  per 
share,  pursuant  to  the  terms  of  the  Front  Range  acquisition  agreement,  whereby  the  10-day  volume-
weighted-average trading price prior to closing was used in determining the number of exercisable shares 
in  the  warrant.  Using  the  Black-Scholes  option-pricing  model,  the  value  of  this  warrant  on  the 
measurement  date  was  $5,087,000.  The  total  value  of  the  consideration  paid  to  Eagle  Energy  was 
$65,095,000.  The  Company  incurred,  and  has  capitalized,  transaction  costs  associated  with  this 
acquisition  of  $517,000.  The  following  summarizes  the  Company’s  estimated  fair  values  of  the  Front 
Range tangible and intangible assets and liabilities acquired, which have been revised for activity in 2007 
as discussed in Note 4 (in thousands):  

F-21 

 
 
  
 
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

Total Current Assets 
Property and Equipment 
Other Assets 
Intangible Assets: 

Customer backlogs 
Non-compete covenants 
Goodwill 

Total Intangible Assets 

Total Assets 

Total Current Liabilities 
Long Term Debt 
Total Liabilities 
Noncontrolling interest in variable interest entity 
Net Assets 

Cash issued to Eagle Energy 
Stock issued to Eagle Energy 
Value of warrant issued to Eagle Energy 
Acquisition expenses 
Transaction value 

$          15,090 
92,376 
584 

3,900 
400 
83,468 
87,768 
195,818 

(10,847) 
(28,753) 
(39,600) 
(90,606) 
$          65,612 

$          30,000 
30,008 
5,087 
517 
$          65,612 

Prior  to  the  Company’s  acquisition  of  its  ownership  interest  in  Front  Range,  the  Company,  directly  or 
through one of its subsidiaries, had entered into four marketing and management agreements with Front 
Range.  

The Company entered into a marketing agreement with Front Range on August 19, 2005 that provided the 
Company  with  the  exclusive  right  to  act  as  an  agent  to  market  and  sell  all  of  Front  Range’s  ethanol 
production.  The  marketing  agreement  was  amended  on  August  9,  2006  to  extend  the  Company’s 
relationship  with  Front  Range  to  allow  the  Company  to  act  as  a  merchant  under  the  agreement.  The 
marketing  agreement  was  amended  again  on  October  17,  2006  to  provide  for  a  term  of  six  and  a  half 
years with provisions for annual automatic renewal thereafter.  

The  Company  entered  into  a  grain  supply  agreement  with  Front  Range  on  August  20,  2005  (amended 
October 17, 2006) under which the Company is to negotiate on behalf of Front Range all grain purchase, 
procurement and transport contracts. The Company is to receive a $1.00 per ton fee related to this service. 
The  grain  supply  agreement  has  a  term  of  two  and  a  half  years  with  provisions  for  annual  automatic 
renewal thereafter.  

The Company entered into a WDG marketing and services agreement with Front Range on August 19, 
2005 (amended October 17, 2006) that provided the Company with the exclusive right to market and sell 
all of Front Range’s WDG production. The Company is to receive the greater of a 5% fee of the amount 
sold or $2.00 per ton. The WDG  marketing and services agreement has a term of two and a half years 
with provisions for annual automatic renewal thereafter. In February 2009, the Company and Front Range 
terminated  this  agreement  and  entered  into  a  new  agreement  with  similar  terms.  The  revised  WDG 
marketing and services agreement continues through May 2009.  

The Company entered into a management agreement with Front Range on August 30, 2005 under which 
the Company is to provide management services to Front Range relating to construction management and 
operational  support. These  services are  advisory  in  nature  as  Front  Range  management  retains ultimate 
decision making authority. The Company is to receive an annual management fee of $150,000 under this 

F-22 

 
 
  
 
 
 
 
 
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

agreement.  The  management  agreement  has  a term  of  three  years  with  provisions  for  annual automatic 
renewal thereafter. This agreement was terminated by mutual agreement on February 28, 2007. 

The  Company’s  acquisition  of  its  ownership  interest  in  Front  Range  does  not  impact  the  Company’s 
rights or obligations under any of these agreements. 

3.  PROPERTY AND EQUIPMENT. 

Property and equipment consisted of the following (in thousands): 

Facilities and plant equipment 
Land 
Other equipment, vehicles and furniture 
Water rights – capital lease 
Construction in progress 

Accumulated depreciation 

December 31, 

2008 
549,829 
5,778 
4,787 
1,613 
11,655 
573,662 
(43,625) 
530,037 

  $ 

  $ 

2007 

262,235 
5,848 
3,703 
1,613 
213,157 
486,556 
(17,852) 
468,704 

$ 

$ 

In  connection  with  the  Company’s  construction  of its  four ethanol  production facilities, it  has recorded 
capitalized interest during their construction and is included in property and equipment. At December 31, 
2008, capitalized interest of $16,270,000 is included in facilities and plant equipment and $1,410,000 is 
included in construction in progress. At December 31, 2007, capitalized interest of $5,961,000 is included 
in construction in progress. Depreciation expense was $25,940,000, $13,682,000 and $2,284,000 for the 
years ended December 31, 2008, 2007 and 2006, respectively. 

In  2008,  the  Company  performed  its  impairment  analysis  for  the  asset  group  associated  with  its 
suspended  plant  construction  project  in  the  Imperial  Valley  near  Calipatria,  California  (―Imperial 
Project‖). The asset group consisted of construction in progress of $43,751,000. In addition, the Imperial 
Project  had  construction-related  accounts  payable  and  accrued  expenses  of  $17,245,000. The  Company 
does not intend to resume construction of its Imperial Project. In November, 2008, the Company began 
proceedings  to  liquidate  these  assets  and  liabilities.  After  assessing  the  estimated  undiscounted  cash 
flows,  the  Company  recorded  an  impairment  charge  of  $40,900,000,  thereby  reducing  its  property  and 
equipment by that amount. To the extent the Company is relieved of the related liabilities, the Company 
may record a gain in the period in which the relief occurs.  

The ethanol industry has experienced significant adverse conditions over the course of the last 12 months, 
including  prolonged  negative  operating  margins.  The  Company  has  also  experienced  these  adverse 
conditions as well as severe working capital and liquidity shortages, and in response to such conditions, 
the Company has reduced its production significantly until market conditions resume to acceptable levels 
and  working  capital  becomes  available.  The  Company  first  reduced  production  in  December  2008  and 
continued  to  reduce  production  through  the  first  quarter  of  2009.  As  of  the  end  of  February  2009,  the 
Company  has  ceased  production  at  its  Madera,  Magic  Valley  and  Stockton  facilities.  The  Company 
continues to  operate  its  Columbia  and  Front  Range  facilities. The  Company  continues  to  assess  market 
conditions and when appropriate, provided it has adequate available working capital, the Company plans 
to bring these facilities back to operation. 

F-23 

 
 
  
 
 
 
 
 
 
 
 
 
 
  
 
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

In 2008, the Company completed construction of its ethanol production facilities, with installed capacity 
of 220 million gallons per year, its goal since 2005. The carrying value of these facilities at December 31, 
2008  was  approximately  $436.0  million.  In  accordance  with  the  Company’s  policy  for  evaluating 
impairment  of  long-lived  assets  in  accordance  with  SFAS  No.  144,  management  has  evaluated  the 
facilities for possible impairment based on projected future cash flows from operations of these facilities, 
including the above mentioned suspensions of its facilities in the near term. Management has determined 
that  the  undiscounted  cash  flows  from  operations  of  these  facilities  over  their  estimated  useful  lives 
exceed their carrying values, and therefore, no impairment has been recognized at December 31, 2008. In 
determining future undiscounted cash flows, the Company has made significant assumptions concerning 
the future viability of the ethanol industry, the future price of corn in relation to the future price of ethanol 
and the overall demand in relation to production and supply capacity.  If the Company were required to 
compute the fair value in the future, it may use the work of a qualified valuation specialist who would 
assist it in examining replacement costs, recent transactions between third parties and cash flow that can 
be generated from operations. Given the recent completion of the facilities, replacement cost would likely 
approximate  the  carrying  value  of  the  facilities.  However,  there  have  been  recent  transactions  between 
independent  parties  to  purchase  plants  at  prices  substantially  below  the  carrying  value  of  the  facilities. 
Some of the facilities have been in bankruptcy and may not be representative of transactions outside of 
bankruptcy.  Given  these  circumstances, should  management  be  required  to  adjust the  carrying  value  of 
the  facilities  to  fair  value  at  some  future  point  in  time,  the  adjustment  could  be  significant  and  could 
significantly impact the Company’s financial position and results of operation. No adjustment has been 
made in these financial statements for this uncertainty. 

4.  GOODWILL AND OTHER INTANGIBLE ASSETS. 

The table below represents the net balances for goodwill and intangible assets (in thousands): 

Useful 
Life 
(Years) 

Gross 

December 31, 2008 
Accumulated 
Amortization/ 
Impairment 

Net Book 
Value 

Gross 

December 31, 2007 
Accumulated 
Amortization/ 
Impairment 

Net Book 
Value 

$ 

88,168  $ 
2,678 

88,168 
— 

$ 

10 
2-3 

4,741 
1,095 

1,789 
1,095 

—  $ 

2,678 

2,952 
— 

88,168 $ 
2,678 

—  $ 
— 

88,168 
2,678 

4,741 
1,095 

1,314 
876 

3,427 
219 

$ 

96,682  $ 

91,052 

$ 

5,630  $ 

96,682 $ 

2,190  $ 

94,492 

Non-Amortizing: 

Goodwill recognized in 

business combinations 

Tradename 
Amortizing: 

Customer relationships 
Non-compete covenants  
Total goodwill and 
intangible assets 

Goodwill – The Company recorded goodwill of  $2,566,000 as part of the Share Exchange Transaction. 
The  Company  originally  recorded  goodwill  of  $80,607,000  as  part  of  the  Company’s  purchase  of 
ownership  interests  in  Front  Range  for  the  year  ended  December  31,  2006.  During  the  year  ended 
December 31, 2007, the Company adjusted the purchase price allocation, increasing goodwill and accrued 
liabilities in the aggregate amount of $2,861,000, due to recognition of additional liabilities that existed at 
the time of the acquisition.  

In 2008, the Company adjusted its goodwill associated with its acquisition of ownership interests in Front 
Range resulting in a decrease of goodwill of $1,121,000. Additionally, the Company performed its annual 
review  of  impairment  of  goodwill  in  accordance  with  SFAS  No.  142,  Goodwill  and  Other  Intangible 
Assets,  as  of  March 31,  2008.  The  Company’s  annual  review  estimated  the  fair  value  of  its  single 
reporting unit to be below its carrying value. As a result, the Company recognized an impairment charge 

F-24 

 
 
  
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

on its remaining goodwill of  $87,047,000, reducing its goodwill balance to zero. The Company did not 
record any goodwill impairments for the years ended December 31, 2007 and 2006. 

Tradename  –  The  Company  recorded  tradename  of  $2,678,000  as  part  of  the  Share  Exchange 
Transaction. The Company determined that the tradename has an indefinite life and therefore, rather than 
being amortized, will, be tested annually for impairment. The Company did not record any impairment on 
its tradename for the years ended December 31, 2008, 2007 and 2006. 

Customer  Relationships  –  The  Company  recorded  customer  relationships  of  $4,741,000  as  part  of  the 
Share Exchange Transaction. The Company has established a useful life of ten years for these customer 
relationships.  

Non-Compete  Covenants  –  The  Company  recorded  non-compete  covenants  of  $400,000  as  part  of  the 
Company’s purchase of ownership interest in Front Range and $695,000 as part of the Share Exchange 
Transaction. The Company has established estimated useful lives of two and three years, respectively, for 
these non-compete covenants. 

Amortization expense associated with intangible assets totaled $693,000, $3,831,000 and $1,714,000 for 
the years ended December 31, 2008, 2007 and 2006, respectively. The weighted-average unamortized life 
of the customer relationships is 6.2 years.  

The expected amortization expense relating to amortizable intangible assets in each of the five years after 
December 31, 2008, are (in thousands): 

Years Ended 
December 31, 
2009 
2010 
2011 
2012 
2013 
Thereafter 
     Total 

Amount 
$               474 
474 
474 
474 
        474      
582 
$        2,952             

5.  SHORT-TERM NOTE PAYABLE. 

In November 2007, the Company issued an unsecured note payable for $6,000,000 to finance short-term 
cash needs related to its plant construction activities. This note was for final construction costs related to 
its Columbia facility and did not result in any cash proceeds to the Company. The note required monthly 
principal payments of $500,000 and accrued interest. The note was paid in full at December 31, 2008. 

6.  DERIVATIVES. 

The business and activities of the Company expose it to a variety of market risks, including risks related 
to changes in commodity prices and interest rates. The Company monitors and manages these financial 
exposures  as  an  integral  part  of  its  risk  management  program.  This  program  recognizes  the 
unpredictability  of  financial  markets  and  seeks  to  reduce  the  potentially  adverse  effects  that  market 
volatility could have on operating results. The Company accounts for its use of derivatives related to its 
hedging activities pursuant to SFAS No. 133, under which the Company recognizes all of its derivative 
instruments in its statement of financial position as either assets or liabilities, depending on the rights or 

F-25 

 
 
  
 
 
 
 
 
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

obligations under the contracts, unless the contracts qualify as a normal purchase or normal sale as further 
discussed  below.  The  Company  has  designated  and  documented  contracts  for  the  physical  delivery  of 
commodity  products  to  and  from  counterparties  as  normal  purchases  and  normal  sales.  Derivative 
instruments are measured at fair value. Changes in the derivative’s fair value are recognized currently in 
income unless specific hedge accounting criteria are met. Special accounting for qualifying hedges allows 
a derivative’s effective gains and losses to be deferred in accumulated other comprehensive income (loss) 
and  later  recorded  together  with  the  gains  and  losses  to  offset  related  results  on  the  hedged  item  in 
income. Companies must formally document, designate and assess the effectiveness of transactions that 
receive hedge accounting. Contracts designated and documented as normal purchases or normal sales are 
not recorded at fair value.  

Commodity Risk – Cash Flow Hedges – The Company uses derivative instruments to protect cash flows 
from fluctuations caused by volatility in commodity prices for periods of up to twelve months in order to 
protect gross profit margins from potentially adverse effects of market and price volatility on ethanol sale 
and  purchase  commitments  where  the  prices  are  set  at  a  future  date  and/or  if  the  contracts  specify  a 
floating or index-based price for ethanol. In addition, the Company hedges anticipated sales of ethanol to 
minimize  its  exposure  to  the  potentially  adverse  effects  of  price  volatility.  These  derivatives  are 
designated  and  documented  as  SFAS  No.  133  cash  flow  hedges  and  effectiveness  is  evaluated  by 
assessing the probability of the anticipated transactions and regressing commodity futures prices against 
the  Company’s  purchase  and  sales  prices.  Ineffectiveness,  which  is  defined  as  the  degree  to  which  the 
derivative does not offset the underlying exposure, is recognized immediately in cost of goods sold.  

For  the  year  ended  December  31,  2008,  a  loss  from  ineffectiveness  in  the  amount  of  $991,000  and  an 
effective  gain  in  the  amount  of  $566,000  were  recorded  in  cost  of  goods  sold.  For  the  year  ended 
December 31, 2007, a gain from ineffectiveness in the amount of $2,832,000 and an effective loss in the 
amount of $1,680,000 were recorded in cost of goods sold. For the year ended December 31, 2006, losses 
of  ineffectiveness  in  the  amount  of  $239,000  and  an  effective  loss  in  the  amount  of  $438,000  was 
recorded in cost of goods sold. For the year ended December 31, 2006, an effective gain in the amount of 
$1,281,000  was  recorded  in  net  sales.  The  notional  balances  remaining  on  these  derivatives  as  of 
December 31, 2008 and 2007 were $0 and $2,427,000, respectively. 

Commodity Risk – Non-Designated Hedges – As part of the Company’s risk management strategy, it uses 
forward contracts on corn, crude oil and reformulated blendstock for oxygenate blending gasoline to lock 
in  prices  for  certain  amounts  of  corn,  denaturant  and  ethanol,  respectively.  These  derivatives  are  not 
designated  under  SFAS  No.  133  for  special  hedge  accounting  treatment.  The  changes  in  fair  value  of 
these contracts are recorded on the balance sheet and recognized immediately in cost of goods sold. The 
Company  recognized  a  loss  of  $2,395,000  (of  which  $1,131,000  is  related  to  settled  non-designated 
hedges),  $6,484,000  and  $0  as  the  change  in  the  fair  value  of  these  contracts  for  the  years  ended 
December 31, 2008, 2007 and 2006, respectively. The notional balances remaining on these contracts as 
of December 31, 2008 and 2007 were $4,215,000 and $29,999,000, respectively.  

Interest Rate Risk – As part of the Company’s interest rate risk management strategy, the Company uses 
derivative  instruments  to  minimize  significant  unanticipated  income  fluctuations  that  may  arise  from 
rising  variable  interest  rate  costs  associated  with  existing  and  anticipated  borrowings.  To  meet  these 
objectives the Company purchased interest rate caps and swaps. The rate for notional balances of interest 
rate  caps  ranging  from  $4,268,000  to  $18,990,000  is  5.50%-6.00%  per  annum.  The  rate  for  notional 
balances of interest rate swaps ranging from $543,000 to $57,654,000 is 5.01%-8.16% per annum.  

These derivatives are designated and documented as SFAS No. 133 cash flow hedges and effectiveness is 
evaluated by assessing the probability of anticipated interest expense and regressing the historical value of 

F-26 

 
 
  
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

the  rates  against  the  historical  value  in  the  existing  and  anticipated  debt.  Ineffectiveness,  reflecting  the 
degree to which the derivative does not offset the underlying exposure, is recognized immediately in other 
income (expense). For the year ended December 31, 2008, gains from ineffectiveness in the amount of 
$4,999,000, gains from effectiveness in the amount of $75,000 and losses from undesignated hedges in 
the  amount  of  $6,456,000  were  recorded  in  other  income  (expense).  These  gains  and  losses  resulted 
primarily  from  the  Company’s  efforts  to  restructure  its  debt  financing  and,  therefore,  making  it  not 
probable that the related borrowings would be paid as designated. As such the Company de-designated 
certain of its interest rate caps and swaps. 

For the year ended December 31, 2007, losses from ineffectiveness in the amount of $4,836,000, losses 
from  effectiveness  in  the  amount  of  $147,000  and  losses  from  undesignated  hedges  in  the  amount  of 
$606,000 were recorded in other income (expense). These losses resulted primarily from the Company’s 
deferral of constructing its  Imperial Valley facility. (See Note 3.) During the year ended December 31, 
2006,  ineffectiveness  in  the  amount  of  $24,000  was  recorded  in  other  income  (expense).  Amounts 
remaining  in  accumulated  other  comprehensive  income  (loss)  were  reclassified  to  income  upon  the 
recognition of the hedged interest expense.  

The  Company  marked  its  derivative  instruments  to  fair  value  at  each  period  end,  except  for  those 
derivative contracts that qualified for the normal purchase and sale exemption under SFAS No. 133.  

Accumulated Other Comprehensive Income – Accumulated other comprehensive income relative to 
derivatives is as follows (in thousands): 

Beginning balance, January 1, 2008 

Net changes 
Less:  Amount reclassified to cost of goods sold 
Less:  Amount reclassified to other income (expense) 

Ending balance, December 31, 2008 

__________ 
*Calculated on a pretax basis 

Commodity 
Derivatives 
Gain/(Loss)* 

$           (455) 
— 
 455 
— 
— 

$  

Interest Rate 
Derivatives 
Gain/(Loss)* 

$ (1,928) 

(2,637) 
— 
 4,565 
— 

$  

F-27 

 
 
  
 
 
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

7.  DEBT. 

Long-term borrowings are summarized in the table below (in thousands): 

$ 

Plant term loans, in forbearance 
Plant working capital lines of credit, in forbearance 
Kinergy operating line of credit, in forbearance 
Notes payable to related party, in forbearance 
Swap note, due 2011 
Variable rate note, due 2011 
Long-term revolving note 
Front Range operating line of credit 
Water rights capital lease obligations 

December 31,  

2008 

2007 

$ 

227,308  
19,175  
10,482  
31,500  
14,987  
582  
— 
1,200  
1,123  

306,357  
(305,420) 

92,308  
9,200  
6,217  
30,000  
16,370  
6,930  
— 
— 
1,261  

162,286  
(11,098) 

Less short-term portion 

Long-term debt 

$ 

937  

$ 

151,188  

Plant  Term  Loans  &  Working  Capital  Lines  of  Credit  –  On  February  27,  2007,  the  Company  closed  a 
debt financing transaction in the aggregate amount of up to $325,000,000 through certain of its  wholly-
owned  indirect  subsidiaries  (the  ―Borrowers‖).  The  primary  purpose  of  the  debt  financing  (the  ―Debt 
Financing‖)  was  to  provide  debt  financing  for  the  development,  construction,  installation,  engineering, 
procurement, design, testing, start-up, operation and maintenance of five ethanol production facilities. On 
November 27, 2007, the Company amended the agreement to apply to four ethanol production facilities, 
thereby  reducing  the  aggregate  amount  of  available  financing  to  up  to  $250,769,000.  During  2008,  the 
Company completed construction of its Magic Valley and Stockton plants, each resulting in total draws 
on  the  Company’s  plant  term  loans  and  working  capital  lines  of  $69,231,000  and  $5,000,000, 
respectively. In addition, the Company utilized approximately $825,000 of its working capital and letter 
of credit facility to obtain a letter of credit, which was outstanding at December 31, 2008. 

The Debt Financing, as amended, included:  

 

 

four construction loan facilities in an aggregate amount of up to $230,769,000. Loans made under 
the construction loan facilities do not amortize, but require payment of accrued interest, and were 
fully due and payable on the earlier of October 27, 2008 or the date the construction loans made 
thereunder were converted into term loans (the ―Conversion Date‖), the latter of which was the 
date  the  last  of  the  four  plants  achieved  commercial  operations.  On  October  27,  2008,  the 
Company  achieved  commercial  operations  of  its  last  plant,  and  at  that  time  converted  its 
construction loans into term loans;  
four term loan facilities in an aggregate amount of up to $230,769,000, which were intended to 
refinance the loans made under the construction loan facilities. The term loans are to be repaid 
ratably by each Borrower on a quarterly basis from and after the Conversion Date in an amount 
equal  to  1.5%  of  the  aggregate  original  principal  amount  of  the  corresponding  term  loan.  The 
remaining principal balance and all accrued and unpaid interest on the term loans are fully due 
and payable on the date that is 84 months after the Conversion Date; and 

F-28 

 
 
  
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

 

a  working  capital  and  letter  of  credit  facility  in  an  aggregate  amount  of  up  to  $20,000,000 
($5,000,000  per  facility)  that  is  fully  due  and  payable  on  the  date  that  is  12  months  after  the 
Conversion  Date.  During  the  term  of  the  working  capital  and  letter  of  credit  facility,  the 
Borrowers may borrow, repay and re-borrow amounts available under the facility.  

Loans and letters of credit under the Debt Financing are subject to conditions precedent, including, among 
others, the absence of a material adverse effect; the absence of defaults or events of defaults; the accuracy 
of certain representations and warranties; the maintenance of a debt-to-equity ratio that is not in excess of 
65:35; the contribution of all required equity by the Company to the Borrowers; and the attainment of at 
least a 1.5-to-1.0 debt service coverage ratio. Loans made under the construction and term loan facilities 
may not be re-borrowed once repaid or re-borrowed once prepaid.  

In  addition  to  scheduled  principal  payments,  starting  after the  Conversion  Date,  the term  loan facilities 
require  mandatory  repayments  of  principal  in  amounts  based  on  the  Borrowers’  free  cash  flow.  The 
percentage of the Borrowers’ free cash flow to be applied to principal repayments is to vary from 50% in 
the first two years following the Conversion Date to 75-100% in succeeding years, based upon repayment 
amounts measured against targeted balances. 

Borrowings  and  the  Borrowers’  obligations  under  the  Debt  Financing  are  secured  by  a  first-priority 
security  interest  in  all  of  the  equity  interests  in  the  Borrowers  and  substantially  all  the  assets  of  the 
Borrowers. The security interests granted by the Borrowers under the Debt Financing restrict the assets 
and  revenues  of  the  Borrowers  and  therefore  may  inhibit  the  Company’s  ability  to  obtain  other  debt 
financing.  

installation,  engineering,  procurement,  design, 

In  connection  with  the  Debt  Financing,  the  Company  also  entered  into  a  Sponsor  Support  Agreement 
under  which  the  Company  is  to  provide  limited  contingent  equity  support  in  connection  with  the 
development,  construction, 
testing,  start-up  and 
maintenance of the four ethanol production facilities. In particular, the Company has agreed to provide a 
warranty with respect to all ethanol plants other than its Madera facility, which is under standard warranty 
through the contractor. The warranty obligations of the Company with respect to the other three facilities 
extend  one  year  beyond the  commercial operations  start  date of each  facility. The  warranty  obligations 
will cease in October 2009, one year from the date the final ethanol plant started commercial operations. 
The  Company’s  obligations  under  the  warranty  are  capped  at  approximately  $28,000,000.  Until  the 
Company’s contingent equity obligations have been fully performed or the warranty period has expired, 
the  Company  may  not incur  any  secured indebtedness  for  borrowed  money,  grant liens  on its  assets  or 
provide  any  secured  credit  enhancements  in  an  aggregate  amount  in  excess  of  $10,000,000  unless  the 
Company provides the lenders under the Debt Financing with the same liens or credit support.  

The  Company  incurred  $13,317,000  of  costs  associated  with  the  completion  of  the  Debt  Financing 
arrangement and has capitalized these costs in other assets, except the portion amortizing during the next 
twelve months, which is classified in other current assets. In connection with the amendment discussed 
above, the Company recognized a write-off of the corresponding facility’s related unamortized financing 
costs  of  approximately  $1,962,000  for  the  year  ended  December  31,  2007.  For  the  other  facilities,  the 
Company recognized amortization of financing costs of approximately $2,018,000 and $2,764,000 for the 
years  ended  December  31,  2008  and  2007.  The  remaining  unamortized  financing  costs  continue  to  be 
amortized over a seven-year life.  

In  March  2008,  the  Company  became  aware  of  various  events  or  circumstances  which  constituted 
defaults under its credit agreement. On March 26, 2008, the Company obtained waivers from its lenders 
as to these defaults and was required to pay the lenders a consent fee in an aggregate amount of $521,000. 

F-29 

 
 
  
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

In  addition  to  the  waivers,  the  Company’s  lenders  agreed  to  amend  the  Debt  Financing.  These 
amendments include an increase in the frequency with which the Company is to deposit certain revenues 
into a restricted account each month, an increase of allowable Eurodollar loans from a maximum of seven 
to a maximum of ten, and the Company was required to pay all remaining project costs on its Madera and 
Columbia plants by May 16, 2008.  

In  February,  2009,  the  Company  became  aware  of  new  and  potential  events  which  constituted  defaults 
under its credit agreement. In February 2009, the Company obtained a waiver and forbearance agreement 
with its lenders which was extended in March 2009. The waiver and forbearance agreement, as extended, 
provides that the lenders will forbear from exercising their rights and remedies under the Debt Financing 
commencing  February  17,  2009  and  ending  on  April  30,  2009.  Further  the  waiver  and  forbearance 
agreement  provides  that  the  Company  may  withdraw  funds  otherwise  required  to  be  reserved  in  two 
accounts designated solely for the Stockton facility and the other for future debt service payments. The 
use  of  these  funds  provides  approximately  $5,385,000  million  to  the  Company  for  operating  activities. 
Further, the lenders have allowed the Company to cease payments of principal and interest due during the 
forbearance  period.  Finally,  under  the  terms  of  the  forbearance  agreement,  the  Company’s  obligations 
will accrue interest at a rate that is based on the Prime Rate as published by the Wall Street Journal plus 
applicable spreads, resulting in rates ranging from 8.29% to 9.35%. Upon expiration of the forbearance 
period, or the Company’s earlier default under the terms of the forbearance, the Company will be required 
to repay all outstanding amounts owed to its lenders. The Company is presently attempting to negotiate 
debt restructuring terms with its lenders. However, the Company cannot provide any assurance that it will 
be able to successfully negotiate satisfactory terms with its lenders.   

Kinergy Operating Line of Credit – Kinergy was originally a party to a $17,500,000 credit facility dated 
as  of  August  17,  2007  with  Comerica  Bank.  Kinergy’s  obligations  to  Comerica  Bank  were  secured  by 
substantially  all  of  its  assets,  subject  to  certain  customary  exclusions  and  permitted  liens,  and  were 
guaranteed  by  the  Company.  On  May  12,  2008,  Kinergy  and  Comerica  entered  into  a  forbearance 
agreement.  The  forbearance  agreement  identified  certain  existing  defaults  under  the  credit  facility  and 
provided that Comerica Bank would forbear for a period of time (the ―Forbearance Period‖) commencing 
on May 12, 2008 and ending on the earlier to occur of (i) August 15, 2008, and (ii) the date that any new 
default  occurred  under  the  Loan  Documents,  from  exercising  its  rights  and  remedies  under  the  Loan 
Documents and under applicable law.  

On  July  28,  2008,  Kinergy  entered  into  a  new  Loan  and  Security  Agreement  (the  ―Loan  Agreement‖) 
dated  July 28,  2008  with  Wachovia  Capital  Finance  Corporation  (Western)  (―Agent‖)  and  Wachovia 
Bank,  National  Association  (―Wachovia‖).  Kinergy  initially  used  the  proceeds  from  the  closing  of  this 
credit facility to repay all amounts outstanding under its credit facility with Comerica Bank and to pay 
certain closing fees.  

The original terms of the Loan Agreement provided for a credit facility in an aggregate amount of up to 
$40,000,000 based on Kinergy’s eligible accounts receivable and inventory levels, subject to any reserves 
established by Agent. Kinergy could also obtain letters of credit under the credit facility, subject to a letter 
of credit sublimit of $10,000,000. The credit facility was subject to certain other sublimits, including as to 
inventory  loan  limits.  Kinergy  could  have  requested  an  increase  in  the  amount  of  the  facility  in 
increments  of  not  less  than  $2,500,000,  up  to  a  maximum  aggregate  credit  limit  of  $45,000,000,  but 
Wachovia had no obligation to agree to any such request. The Loan Agreement also contained restrictions 
on  distributions  of  funds  from  Kinergy  to  the  Company.  In  addition,  the  Loan  Agreement  contained  a 
single financial covenant requiring that Kinergy generate EBITDA in specified amounts during 2008 and 
2009.  For  subsequent  periods,  the  minimum  EBITDA  covenant  amounts  were  to  be  determined  based 

F-30 

 
 
  
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

upon financial projections to be delivered by Kinergy and shall be mutually agreed upon by Kinergy and 
Agent. 

Kinergy  paid  customary  closing  fees,  including  a  closing  fee  of  0.50%  of  the  maximum  credit,  or 
$200,000, to Wachovia, and $150,000 in legal fees to legal counsel to Agent and Wachovia. On July 28, 
2008, the Company entered into a Guarantee dated July 28, 2008 in favor of Agent for and on behalf of 
Wachovia. The Guarantee provides for the unconditional guarantee by the Company of, and the Company 
agreed to be liable for, the payment and performance when due of Kinergy’s obligations under the Loan 
Agreement.  

In  February  2009,  Kinergy  determined  it  had  violated  certain  of  its  covenants,  including  its  EBITDA 
covenant  for  2008,  and  as  a  result,  entered  into  an  amendment  and  forbearance  agreement  which  was 
extended in March 2009 (―Amendment‖) with Agent and Wachovia. The Amendment identified certain 
defaults under the Loan Agreement, as to which Agent and Wachovia agreed to forebear from exercising 
their rights and remedies under the Loan Agreement commencing February 13, 2009 through April 30, 
2009.  The  Amendment  reduced  the  aggregate  amount  of  the  credit  facility  from  up  to  $40,000,000  to 
$10,000,000.  

The  Amendment  also  increased  the  interest  rates.  Kinergy  may  borrow  under  the  credit  facility  based 
upon (i) a rate equal to (a) the London Interbank Offered Rate (―LIBOR‖), divided by 0.90 (subject to 
change based upon the reserve percentage in effect from time to time under Regulation D of the Board of 
Governors  of  the  Federal  Reserve  System),  plus  (b)  4.50%  depending  on  the  amount  of  Kinergy’s 
EBITDA  for  a  specified  period,  or  (ii)  a  rate  equal  to  (a)  the  greater  of  the  prime  rate  published  by 
Wachovia  Bank  from  time  to  time,  or  the  federal  funds  rate  then  in  effect  plus  0.50%,  plus  (b)  2.25% 
depending on the amount of Kinergy’s EBITDA for a specified period. In addition, Kinergy is required to 
pay an unused line fee at a rate equal to 0.375% as well as other customary fees and expenses associated 
with the credit facility and issuances of letters of credit. Kinergy’s obligations under the Loan Agreement 
are secured by a first-priority security interest in all of its assets in favor of Agent and Wachovia.  

The credit facility originally matured on July 28, 2011, unless sooner terminated. Kinergy is permitted to 
terminate the credit facility early upon ten days prior written notice. Agent and Wachovia may terminate 
the credit facility early at any time on or after an event of default has occurred and is continuing. In the 
event the credit facility is for any reason terminated prior to the maturity date, Kinergy will be required to 
pay an early termination fee ranging from 0.50% to 1.00% of the maximum credit, based on the date of 
termination if the credit facility is terminated on or before July 29, 2010. 

Upon expiration of the Amendment, Kinergy will be required to repay all outstanding amounts to Agent 
and  Wachovia,  and  as  such,  the  Company  has  reclassified  all  amounts  to  current  on  its  consolidated 
balance  sheet.  The  Company  is  attempting  to  negotiate  new  terms  satisfactory  to  Kinergy,  Agent  and 
Wachovia. 

Notes Payable to Related Party – In November 2007, Pacific Ethanol Imperial, LLC (―PEI Imperial‖), an 
indirect  subsidiary  of  the  Company,  borrowed  $15,000,000  from  Lyles  United,  LLC  under  a  Secured 
Promissory Note containing customary terms and conditions. The loan accrued interest at a rate equal to 
the Prime Rate of interest as reported from time to time in The Wall Street Journal, plus 2.00%, computed 
on the basis of a 360-day year of twelve 30-day months. The loan was due 90-days after issuance or, if 
extended  at  the  option  of  PEI  Imperial,  365-days  after  the  end  of  such  90-day  period.  This  loan  was 
extended by PEI Imperial to February 25, 2009. The Secured Promissory Note provided that if the loan 
was  extended,  the  Company  was  to  issue  a  warrant  to  purchase  100,000  shares  of  the  Company’s 

F-31 

 
 
  
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

common stock at an exercise price of $8.00 per share. The Company issued this warrant simultaneously 
with  the  closing  of  the  issuance  of  the  Company’s  Series  B  Preferred  Stock  on  March  27,  2008.  The 
warrant is exercisable at any time during the 18-month period after the date of issuance.   

In December 2007, PEI  Imperial borrowed an additional $15,000,000 from Lyles United, LLC under a 
second Secured Promissory Note containing customary terms and conditions. The loan accrued interest at 
a rate equal to the Prime Rate of interest as reported from time to time in  The Wall Street Journal, plus 
4.00%, computed on the basis of a 360-day year of twelve 30-day months. The loan was due on March 
31, 2008, but was extended at the option of PEI Imperial, to March 31, 2009. As a result of the extension, 
the interest rate increased by 2.00% to the rate indicated above.  

In November 2008, PEI Imperial restructured its aggregate $30,000,000 loan from Lyles United, LLC by 
paying all accrued and unpaid interest thereon and assigning the aforementioned two Secured Promissory 
Notes to the Company. The Company issued an Amended and Restated Promissory Note in the principal 
amount  of  $30,000,000  and  Lyles  United,  LLC  cancelled  the  two  Secured  Promissory  Notes.  The 
Amended and Restated Promissory Note is due March 15, 2009 and accrues interest at the Prime Rate of 
interest as reported from time to time in The Wall Street Journal, plus 3.00%, computed on the basis of a 
360-day  year  of twelve  30-day  months.  The  Company  and  Lyles  United,  LLC  (―Lyles  United‖) jointly 
instructed Pacific Ethanol California, Inc. (―PEI California‖) pursuant to an Irrevocable Joint Instruction 
Letter to remit directly to Lyles United, LLC any cash distributions received by PEI California on account 
of its ownership interests in PEI Imperial and Front Range until such time as the Amended and Restated 
Promissory Note is repaid in full. In addition, PEI California entered into a Limited Recourse Guaranty to 
the extent of such cash distributions in favor of Lyles United, LLC. Finally, Pacific Ag. Products, LLC 
entered into an Unconditional Guaranty as to all of the Company’s obligations under the Amended and 
Restated  Promissory  Note  and  pledged  all  of  its  assets  as  security  therefore  pursuant  to  a  Security 
Agreement.  

In  October  2008,  upon  completion  of  the  Stockton  facility,  the  Company  converted  final  unpaid 
construction  costs  to  an  unsecured  note  payable.  The  note  payable  is  between  the  Company  and  Lyles 
Mechanical  Co.  in  the  principal  amount  of  $1,500,000  and  is  due  with  accrued  interest  on  March  31, 
2009.  Interest  accrues  at  the  Prime  Rate  of  interest  as  reported  from  time  to  time  in  the  Wall  Street 
Journal, plus 2.00%, computed on the basis of a 360-day year of twelve 30-day months. 

In February 2009, the Company notified Lyles United and Lyles Mechanical that it would not be able to 
pay off its notes due March 15, and March 31, 2009 and as a result, entered into a forbearance agreement, 
which was extended in March 2009. Under the terms of the forbearance agreement, as extended, Lyles 
United  and  Lyles  Mechanical  agreed  to  forbear  from  exercising  their  rights  and  remedies  against  the 
Company through April 30, 2009. Upon expiration of the forbearance agreement, the Company will be 
required to repay the amounts due to Lyles United and Lyles Mechanical, and as such, the Company has 
classified all amounts in current liabilities on its consolidated balance sheet. 

Swap Note – The swap note is a term loan, with a floating interest rate, established on a quarterly basis, 
equal to the 90-day LIBOR plus 3.00%. The Company has entered into a swap contract with the lender to 
provide a fixed rate of 8.16%. The loan matures in five years, but has required principal payments due 
based  on  a  ten-year  amortization  schedule.  Quarterly  payments  are  approximately  $678,000,  including 
interest with final payment due November 10, 2011.  

Variable Rate Note – The variable rate note is a term loan that carries an interest rate that will float at a 
rate equal to the 90-day LIBOR plus 2.75-3.50%, depending on a debt-to-net worth ratio. As of December 

F-32 

 
 
  
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

31, 2008, the interest rate was 5.39%. The variable loan matures in five years but is amortized over 10 
years  with  a  final  payment  due  November  10,  2011.  Quarterly  payments  of  approximately  $654,000 
which are applied in a cascading order, as follows: long-term revolving note interest, variable rate note 
interest, variable rate note principal and long-term revolving note principal.  

Front Range Operating Line of Credit – Front Range has a line of credit of $3,500,000 with a commercial 
bank  to  support  working  capital,  specifically  inventories  and  accounts  receivable.  The  line  of  credit 
expires November 24, 2009 and bears interest at a rate equal to the 30-day LIBOR plus 3.75%. The line 
of credit is secured by substantially all of the assets of Front Range. 

Long-Term  Revolving  Note  –  The  long-term  revolving  note  is  a  revolving  loan  in  the  amount  of 
$5,000,000  and  carries  an  interest  rate  that  will  float  at  a  rate  equal  to  the  30-day  LIBOR,  plus  2.75-
3.50%,  depending  on  a  debt-to-net  worth ratio.  As  of  December  31, 2008, the interest  rate  was  5.39%. 
Repayment terms are included above in the description of the variable rate note.  

The  swap  note,  variable  rate  note  and  long-term  revolving  note  are  due  in  2011,  and  include  an 
accelerated principal reduction provision based on excess net cash flow. Excess net cash flow is measured 
on an annual basis and is defined as net income before interest expense, income taxes, depreciation and 
amortization and after giving effect to scheduled loan payments and capital expenditures. The provision 
requires the Company to pay 20% of its excess net cash flow within 120 days of its year end; however, 
this  amount  is  not  to  exceed  $4,000,000  per  fiscal  year.  The  accelerated  payment  for  the  year  ended 
December  31,  2008  and  2007  is  $0  and  $4,000,000,  respectively,  and  had  the  effect  of  increasing  the 
maturities of long-term debt due in 2008 and 2007 and decreasing the future maturities of long-term debt 
that would have been due in 2011.  

The  three  notes  listed  above  represent  permanent  financing  and  are  collateralized  by  a  perfected,  first-
priority security interest in all of the assets of Front Range, including inventories and all rights, title and 
interest in all tangible and intangible assets of Front Range; a pledge of 100% of the ownership interest in 
Front Range; an assignment of all revenues produced by Front Range; a pledge and assignment of Front 
Range’s material contracts and documents, to the extent assignable; all contractual cash flows associated 
with such agreements; and any other collateral security as the lender may reasonably request.  

These  collateralizations  restrict  the  assets  and  revenues  as  well  as  future  financing  strategies  of  Front 
Range, the Company’s variable interest entity, but do not apply to, nor have bearing upon any financing 
strategies that the Company may choose to undertake in the future. 

The carrying  values and classification of assets that are collateral for the obligations  of Front Range at 
December 31, 2008 are as follows (in thousands): 

Current assets 
Property and equipment 
Other assets 

Total collateralized assets 

$          19,369 
49,231 
388 
$          69,988 

Front  Range  is  subject  to  certain  loan  covenants.  Under  these  covenants,  Front  Range  is  required  to 
maintain a certain fixed-charge coverage ratio, a minimum level of working capital and a minimum level 
of net worth. The covenants also set a maximum amount of additional debt that may be incurred by Front 
Range.  The  covenants  also  limit  annual  distributions  that  may  be  made  to  owners  of  Front  Range, 
including  the  Company,  based  on  Front  Range’s  leverage  ratio.  Front  Range  is  currently  out  of 

F-33 

 
 
  
 
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

compliance with certain of its covenants and is currently seeking a waiver from its lender. Until a waiver 
is obtained, the Company has reclassified the related outstanding balance on the loan to current.  

Water Rights Capital Lease – The water rights lease obligation relates to a lease agreement with the Town 
of Windsor for augmentation water for use in Front Range’s production processes. The lease required an 
initial payment of $400,000, paid in 2006, and annual payments of $160,000 per year for the following 
ten  years.  The  future  payments  were  discounted  using  a  5.25%  interest  rate  which  was  comparable  to 
available borrowing rates at the time of execution of the agreement. The obligation has been recorded as a 
capital lease and included in long-term obligations and the related asset has been included in property and 
equipment. 

Interest Expense on Borrowings – Interest expense on all borrowings discussed above was $12,271,000, 
$1,882,000 and $720,000, for the years ended December 31, 2008, 2007 and 2006, respectively. These 
amounts  were  net  of  capitalized  interest  and  deferred  financing  fees  of  $9,186,000,  $8,494,000  and 
$671,000  for  the  years  ended  December  31,  2008,  2007  and  2006,  respectively,  and  included  the 
Company’s construction costs of plant and equipment.  

The amounts of long-term debt maturing, including current debt in forbearance, due in each of the next 
five years are included below (in thousands):  

Years Ended 
December 31, 

2009 
2010 
2011 
2012 
2013 
Thereafter 
Total 

Amount 

$  305,420 
130 
122 
123 
130 
432 
$  306,357 

8.  INCOME TAXES.  

The asset and liability method is used to account for income taxes. Under this method, deferred tax assets 
and liabilities are recognized for tax credits and for the future tax consequences attributable to differences 
between  the  financial  statement  carrying  amounts  of  existing  assets  and  liabilities  and  their  tax  bases. 
Deferred  tax  assets  and  liabilities  are  measured  using  enacted  tax  rates  expected  to  apply  to  taxable 
income  in  the  years  in  which  those  temporary  differences  are  expected  to  be  recovered  or  settled.  A 
valuation  allowance  is  recorded to reduce the carrying  amounts  of  deferred  tax  assets  unless  it  is  more 
likely than not that such assets will be realized.  

The Company files a consolidated federal income tax return. This return includes all corporate companies 
80% or more owned by the Company as well as the Company’s pro-rata share of taxable income from 
pass-through entities in which the Company holds an ownership interest. State tax returns are filed on a 
consolidated, combined or separate basis depending on the applicable laws relating to the Company and 
its subsidiaries. 

The Company recorded no provision for income taxes for each of the years ended December 31, 2008, 
2007 and 2006.  

F-34 

 
 
  
 
 
 
 
 
 
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

A  reconciliation  of  the  differences  between  the  United  States  statutory  federal  income  tax  rate  and  the 
effective tax rate as provided in the consolidated statements of operations is as follows: 

Statutory rate 
State income taxes, net of federal benefit 
Change in valuation allowance 
Impairment of Kinergy goodwill 
Valuation allowance relating to equity items 
Non-deductible items 
Prior year purchase accounting adjustment 
Other 

Effective rate 

Years Ended December 31, 

2008 

2007 

2006 

(35.0)% 

        (4.3) 
        37.6 
      1.1 
          0.7 
            — 
      — 
         (0.1) 

0.0% 

(35.0)% 
(5.9) 
49.1 
    — 
(8.3) 
0.8 
               — 
(0.7) 
0.0% 

(35.0)% 
—  
  (2,091.8) 
— 
      369.8 
        15.6 
   1,599.9 
      141.5 

0.0% 

Deferred income taxes are provided using the asset and liability method to reflect temporary differences 
between the financial statement carrying amounts and tax bases of assets and liabilities using presently 
enacted tax rates and laws. The components of deferred income taxes included in the consolidated balance 
sheets were as follows (in thousands): 

Deferred tax assets: 
  Net operating loss carryforward 
     Impairment of asset group 
     Investment in partnerships 
     Derivative instruments mark-to-market 
  Stock option compensation 
  Other accrued liabilities 
     Available-for-sale securities 
  Other 
Total deferred tax assets 

Deferred tax liabilities: 
  Fixed assets 
Intangibles 
Investment in partnerships 

Total deferred tax liabilities 

Valuation allowance 
Net deferred tax liabilities 

Classified in balance sheet as: 
  Deferred income tax benefit (current assets) 
  Deferred income taxes (long-term liability) 

December 31, 

2008 

2007 

  $     61,474 
       16,188 
         8,852 
  2,452 
2,494 
124 
      — 
1,920 
93,504 

(26,952) 
(2,265) 
— 
(29,217) 

(65,378) 
(1,091) 

— 
(1,091) 
(1,091) 

$ 

$ 

$ 

  $     23,218 
              — 
              — 
2,341 
1,339 
189 
   970 
132 
28,189 

(15,318) 
(2,513) 
(995) 
(18,826) 

(10,454) 
(1,091) 

— 
(1,091) 
(1,091) 

$ 

$ 

$ 

At  December  31,  2008  and  2007,  the  Company  had  federal  net  operating  loss  carryforwards  of 
approximately  $169,157,000  and  $71,466,000,  and  state  net  operating 
loss  carryforwards  of 
approximately  $149,124,000  and  $67,392,000,  respectively.  These  net  operating  loss  carryforwards 
expire at  various  dates  beginning  in  2013. The  deferred  tax asset for  the  Company’s  net  operating  loss 

F-35 

 
 
  
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  
 
 
 
 
 
 
  
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

carryforwards  at  December 31,  2008  does  not  include  $5,442,000  which  relates  to  the  tax  benefits 
associated  with  warrants  and  non-statutory  options  exercised  by  employees,  members  of  the  board  and 
others  under  the  various  incentive  plans.  These  tax  benefits  will  be  recognized  in  stockholders’  equity 
rather than in the statements of operations in accordance with SFAS No. 109 but not until the period that 
these amounts decrease taxes payable. 

A portion of the Company’s net operating loss carryforwards will be subject to provisions of the tax law 
that limit the use of losses incurred by a company prior to becoming a member of a consolidated group as 
well  as  losses  that  existed  at  the  time  there  is  a  change  in  control  of  an  enterprise.  The  amount  of  the 
Company’s net operating loss carryforwards that would be subject to these limitations was approximately 
$7,728,000 at December 31, 2008. 

In assessing whether the deferred tax assets are realizable, SFAS No. 109 establishes a more likely than 
not standard. If it is determined that it is more likely than not that deferred tax assets will not be realized, 
a  valuation  allowance  must  be  established  against  the  deferred  tax  assets.  The  ultimate  realization  of 
deferred tax assets is dependent upon the generation of future taxable income during the periods in which 
the associated temporary differences become deductible. Management considers the scheduled reversal of 
deferred  tax  liabilities,  projected  future  taxable  income  and  tax  planning  strategies  in  making  this 
assessment. 

A valuation allowance has been established in the amount of $65,378,000 and $10,454,000 at December 
31,  2008  and  2007,  respectively,  based  on  Company’s  assessment  of  the  future  realizability  of  certain 
deferred tax assets. For the years ending December 31, 2008 and 2007, the Company recorded an increase 
in  the  valuation  allowance  of  $54,924,000  and  $7,062,000,  respectively.  The  valuation  allowance  on 
deferred  tax  assets  is  related  to  future  deductible  temporary  differences  and  net  operating  loss 
carryforwards  (exclusive  of  net  operating  losses  associated  with  items  recorded  directly  to  equity)  for 
which the Company has concluded it is more likely than not that these items will not be realized in the 
ordinary course of operations. 

On  January  1,  2007,  the  Company  adopted  the  provisions  of  FIN  48,  Accounting  for  Uncertainty  in 
Income  Taxes,  an  interpretation  of  FASB  Statement  No.  109,  Accounting  for  Income  Taxes.  FIN  48 
clarifies the accounting for uncertainty in income taxes recognized in the entity’s financial statements in 
accordance with SFAS No. 109. The adoption of FIN 48 did not result in a cumulative effect adjustment 
to  the  Company’s  retained  earnings.  As  of  the  date  of  adoption,  the  Company  had  no  unrecognized 
income tax benefits. Accordingly, the annual effective tax rate was not affected by the adoption of FIN 
48. Should the Company incur interest and penalties relating to tax uncertainties, such amounts would be 
classified as a component of interest expense and operating expense, respectively. 

At December 31, 2008, the Company had no increase or decrease in unrecognized income tax benefits for 
the year. There was no accrued interest or penalties relating to tax uncertainties at December 31, 2008. 
Unrecognized tax benefits are not expected to increase or decrease within the next twelve months.  

The Company is subject to income tax in the U.S. federal jurisdiction and various state jurisdictions and 
has  identified  its  federal  tax  return  and  tax  returns  in  state  jurisdictions  below  as  ―major‖  tax  filings. 
These jurisdictions, along with the years still open to audit under the applicable statutes of limitation, are 
as follows:   

F-36 

 
 
  
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

Jurisdiction 

Tax Years 

Federal   
California 
Colorado 
Florida   
Idaho 
Nebraska 
Oregon   
Wisconsin 

2005 – 2007 
2004 – 2007 
2006 – 2007 
2005 
2006 – 2007 
2006 – 2007 
2006 – 2007 
2006 – 2007 

However,  because  the  Company  had  net  operating  losses  and  credits  carried  forward  in  several  of  the 
jurisdictions,  including  the  U.S.  federal and  California jurisdictions,  certain  items  attributable to  closed 
tax  years  are  still  subject  to  adjustment  by  applicable  taxing  authorities  through  an  adjustment  to  tax 
attributes carried forward to open years. 

9.  PREFERRED STOCK. 

Series  A  Preferred  Stock  –  On  April  13,  2006,  the  Company  issued  to  Cascade  Investment,  L.L.C. 
(―Cascade‖), 5,250,000 shares of Series A Cumulative Redeemable Convertible Preferred Stock (―Series 
A Preferred Stock‖) at a price of $16.00 per share, for an aggregate purchase price of $84,000,000. The 
Company used $4,000,000 of the proceeds for general working capital and the remaining $80,000,000 for 
the construction of its ethanol production facilities.  

The  Series  A  Preferred  Stock  ranks  senior  in  liquidation  and  dividend  preferences  to  the  Company’s 
common  stock.  Holders  of  Series  A  Preferred  Stock  are  entitled  to  quarterly  cumulative  dividends 
payable  in  arrears  in  cash  in  an  amount  equal  to  5%  per  annum  of  the  purchase  price  per  share  of  the 
Series  A  Preferred  Stock.  Prior  to  March  27,  2008,  and  at  the  Company’s  option,  it  could  have  made 
dividend payments in additional shares of Series A Preferred Stock based on the value of the purchase 
price per share of the Series A Preferred Stock.  

The holders of the Series A Preferred Stock have conversion rights initially equivalent to two shares of 
common stock for each share of Series A Preferred Stock, subject to customary antidilution adjustments. 
Certain  specified issuances  will  not  result in antidilution adjustments. The  shares  of  Series  A  Preferred 
Stock are also subject to forced conversion upon the occurrence of a transaction that would result in an 
internal rate of return to the holders of the Series A Preferred Stock of 25% or more. Accrued but unpaid 
dividends  on  the  Series  A  Preferred  Stock  are  to  be  paid  in  cash  upon  any  conversion  of  the  Series  A 
Preferred Stock.  

The holders of Series A Preferred Stock have a liquidation preference over the holders of the Company’s 
common stock equivalent to the purchase price per share of the Series A Preferred Stock plus any accrued 
and unpaid dividends on the Series A Preferred Stock. A liquidation will be deemed to occur upon the 
happening  of  customary  events,  including  transfer  of  all  or  substantially  all  of  the  Company’s  capital 
stock or assets or a merger, consolidation, share exchange, reorganization or other transaction or series of 
related transaction, unless holders of 66 2/3% of the Series A Preferred Stock vote affirmatively in favor 
of or otherwise consent to such transaction. 

Under the provisions of SFAS No. 133, the Series A Preferred Stock’s redemption feature was likely a 
derivative  instrument  that  required  bifurcation  from  the  host  contract.  SFAS  No.  133  requires  all 
derivative instruments to be measured at fair value. However, because the underlying events that would 
cause the redemption feature to be exercisable (i.e., redemption events) are in the Company’s control and 

F-37 

 
 
  
 
 
  
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

were not probable of occurrence in the foreseeable future, the Company believed that the fair value of the 
embedded  derivative  was  de  minimis  at  the  date  of  issuance  of  the  Series  A  Preferred  Stock.  As  of 
December 31, 2007, the redemption events were no longer applicable, as the funds have been fully used 
for construction. 

During 2008, Cascade converted all of its Series A Preferred Stock into shares of the Company’s common 
stock. In the aggregate, Cascade converted 5,315,625 shares of Series A Preferred Stock into 10,631,250 
shares of the Company’s common stock. Accordingly, as of December 31, 2008, no shares of Series A 
Preferred Stock were outstanding.  

Series  B  Preferred  Stock  –  On  March  18,  2008,  the  Company  entered  into  a  Securities  Purchase 
Agreement (the ―Purchase Agreement‖) with Lyles United, LLC. The Purchase Agreement provided for 
the  sale  by  the  Company  and  the  purchase  by  Lyles  United,  LLC  of  (i)  2,051,282  shares  of  the 
Company’s  Series  B  Cumulative  Convertible  Preferred  Stock  (the  ―Series  B  Preferred  Stock‖),  all  of 
which  are  initially  convertible  into  an  aggregate  of  6,153,846  shares  of  the  Company’s  common  stock 
based on an initial three-for-one conversion ratio, and (ii) a warrant to purchase an aggregate of 3,076,923 
shares of the Company’s common stock at an exercise price of $7.00 per share. On March 27, 2008, the 
Company  consummated  the  purchase  and  sale  of  the  Series  B  Preferred  Stock.  Upon  issuance,  the 
Company recorded $39,898,000, net of issuance costs, in stockholders’ equity. The warrant is exercisable 
at any time during the period commencing on the date that is six months and one day from the date of the 
warrant and ending ten years from the date of the warrant.  

On  May  20,  2008,  the  Company  entered  into  a  Securities  Purchase  Agreement  (the  ―May  Purchase 
Agreement‖)  with  Neil  M.  Koehler,  Bill  Jones,  Paul  P.  Koehler  and  Thomas  D.  Koehler  (the  ―May 
Purchasers‖). The May Purchase Agreement provided for the sale by the Company and the purchase by 
the May Purchasers of (i) an aggregate of 294,870 shares of the Company’s Series B Preferred Stock, all 
of which are initially convertible into an aggregate of 884,610 shares of the Company’s common stock 
based on an initial three-for-one conversion ratio, and (ii) warrants to purchase an aggregate of 442,305 
shares of the Company’s common stock at an exercise price of $7.00 per share. On  May 22, 2008, the 
Company  consummated  the  purchase and  sale  under the May  Purchase  Agreement.  Upon issuance, the 
Company  recorded  $5,745,000,  net  of  issuance  costs,  in  stockholders’  equity.  The  warrants  are 
exercisable at any time during the period commencing on the date that is six months and one day from the 
date of the warrants and ending ten years from the date of the warrants.  

The  Series  B  Preferred  Stock  ranks  senior  in  liquidation  and  dividend  preferences  to  the  Company’s 
common stock. Holders of Series B Preferred Stock are entitled to quarterly cumulative dividends payable 
in arrears in cash in an amount equal to 7.00% per annum of the purchase price per share of the Series B 
Preferred  Stock;  however,  subject  to  the  provisions  of  the  Letter  Agreement  described  below,  such 
dividends  may,  at  the  option  of the  Company,  be  paid  in  additional shares of  Series  B  Preferred  Stock 
based  initially  on  liquidation  value  of  the  Series  B  Preferred  Stock.  The  holders  of  Series  B  Preferred 
Stock have a liquidation preference over the holders of the Company’s common stock initially equivalent 
to $19.50 per share of the Series B Preferred Stock plus any accrued and unpaid dividends on the Series B 
Preferred  Stock.  A  liquidation  will  be  deemed  to  occur  upon  the  happening  of  customary  events, 
including the transfer of all or substantially all of the capital stock or assets of the Company or a merger, 
consolidation, share exchange, reorganization or other transaction or series of related transaction, unless 
holders of 66 2/3% of the Series B Preferred Stock vote affirmatively in favor of or otherwise consent that 
such transaction shall not be treated as a liquidation. The Company believes that such liquidation events 
are  within  its  control  and  therefore,  in  accordance  with  Emerging  Issues  Task  Force  Issue  D-98, 
Classification  and  Measurement  of  Redeemable  Securities,  the  Company  has  classified  the  Series  B 
Preferred Stock in stockholders’ equity. 

F-38 

 
 
  
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

The holders of the Series B Preferred Stock have conversion rights initially equivalent to three shares of 
common stock for each share of Series B Preferred Stock. The conversion ratio is subject to customary 
antidilution adjustments. In addition, antidilution adjustments are to occur in the event that the Company 
issues equity securities at a price equivalent to less than $6.50 per share, including derivative securities 
convertible  into  equity  securities  (on  an  as-converted  or  as-exercised  basis).  The  shares  of  Series  B 
Preferred  Stock  are  also  subject  to  forced  conversion  upon  the  occurrence  of  a  transaction  that  would 
result  in  an  internal  rate  of  return  to  the  holders  of  the  Series  B  Preferred  Stock  of  25%  or  more.  The 
forced conversion is to be based upon the conversion ratio as last adjusted. Accrued but unpaid dividends 
on  the  Series  B  Preferred  Stock  are  to  be  paid  in  cash  upon  any  conversion  of  the  Series  B  Preferred 
Stock. 

The holders of Series B Preferred Stock vote together as a single class with the holders of the Company’s 
common stock on all actions to be taken by the Company’s stockholders. Each share of Series B Preferred 
Stock  entitles  the  holder  to  the  number  of  votes  equal  to  the  number  of  shares  of  common  stock  into 
which  each  share  of  Series  B  Preferred  Stock  is  convertible  on  all  matters  to  be  voted  on  by  the 
stockholders of the Company. Notwithstanding the foregoing, the holders of Series B Preferred Stock are 
afforded  numerous  customary  protective  provisions  with  respect  to  certain  actions  that  may  only  be 
approved by holders of a majority of the shares of Series B Preferred Stock. As long as 50% of the shares 
of Series B Preferred Stock remain outstanding, the holders of the Series B Preferred Stock are afforded 
preemptive rights with respect to certain securities offered by the Company.   

In connection with the closing of the above mentioned sales of its Series B Preferred Stock, the Company 
entered  into  Letter  Agreements  with  Lyles  United,  LLC  and  the  May  Purchasers  under  which  the 
Company expressly waived its rights under the Certificate of Designations to make dividend payments in 
additional shares of Series B Preferred Stock in lieu of cash dividend payments without the prior written 
consent of Lyles United, LLC and the May Purchasers.   

Registration  Rights  Agreement    –  In  connection  with  the  closing  of  the  sale  of  its  Series  A  and  B 
Preferred Stock, the Company entered into Registration Rights Agreements with holders of the Preferred 
Stock.  The  Registration  Rights  Agreements  are  to  be  effective  until the  holders  of  the  Preferred  Stock, 
and their affiliates, as a group, own less than 10% for each of the series issued, including common stock 
into  which  such  Preferred Stock  has  been  converted (the  ―Termination  Date‖). The  Registration  Rights 
Agreements provide that holders of a majority of the Preferred Stock, including common stock into which 
such Preferred Stock has been converted, may demand and cause the Company, at any time after the first 
anniversary of the Closing, to register on their behalf the shares of common stock issued, issuable or that 
may be issuable upon conversion of the Preferred Stock and as payment of dividends thereon, and, in the 
case of the Series B Preferred Stock, upon exercise of the related warrants as well as upon exercise of a 
warrant  to  purchase  100,000  shares  of  the  Company’s  common  stock  at  an  exercise  price  of  $8.00  per 
share and issued in connection with the extension of the maturity date of an unrelated loan (collectively, 
the ―Registrable Securities‖). The Company is required to keep such registration statement effective until 
such time as all of the Registrable Securities are sold or until such holders may avail themselves of Rule 
144 for sales of Registrable Securities without registration under the Securities Act of 1933, as amended. 
The holders are entitled to two demand registrations on Form S-1 and unlimited demand registrations on 
Form  S-3;  provided,  however,  that  the  Company  is  not  obligated  to  effect  more  than  one  demand 
registration on Form S-3 in any calendar year. In addition to the demand registration rights afforded the 
holders  under  the  Registration  Rights  Agreement,  the  holders  are  entitled  to  unlimited  ―piggyback‖ 
registration rights. These rights entitle the holders who so elect to be included in registration statements to 
be  filed  by  the  Company  with  respect  to  other  registrations  of  equity  securities.  The  Company  is 
responsible for all costs of registration, plus reasonable fees of one legal counsel for the holders, which 
fees are not to exceed $25,000 per registration. The Registration Rights Agreements include customary 

F-39 

 
 
  
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

representations  and  warranties  on  the  part  of  both  the  Company  and  the  holders  and  other  customary 
terms and conditions. 

Under  its  obligations  described  above,  in  connection  with  the  Series  A  Preferred  Stock,  the  Company 
filed a registration statement with the Commission, registering for resale shares of the common stock up 
to 10,500,000, which was declared effective in November 2007. 

Deemed  Dividend  on  Preferred  Stock    –  In  accordance  with  EITF  Issue  No.  98-5,  Accounting  for 
Convertible  Securities  with  Beneficial  Conversion  Features  or  Contingently  Adjustable  Conversion 
Ratios, and EITF Issue No. 00-27, Application of Issue No. 98-5 to Certain Convertible Instruments, the 
Series A Preferred Stock and Series B Preferred Stock issued to the May Purchasers is considered to have 
an  embedded  beneficial  conversion  feature  because  the  conversion  price  (as  adjusted  for  the  value 
allocated to the warrants) was less than the fair value of the Company’s common stock at the issuance 
date. As a result, the Company has recorded a deemed dividend on preferred stock of $761,000, $28,000 
and $84,000,000 for the years ended December 31, 2008, 2007 and 2006, respectively. These non-cash 
dividends are to reflect the implied economic value to the preferred stockholder of being able to convert 
its shares into common stock at a price (as adjusted for the value allocated to any warrants) which was in 
excess  of  the  fair  value  of  the  Preferred  Stock  at  the  time  of  issuance.  The  fair  value  allocated  to  the 
Preferred  Stock  together  with  the  original  conversion  terms  (as  adjusted  for  the  value  allocated  to  any 
warrants) were used to calculate the value of the deemed dividend on the Preferred Stock on the date of 
issuance.  

For  the  year  ended  December  31,  2008,  the  deemed  dividend  on  the  Series  B  Preferred  Stock  was 
calculated using the difference between the conversion price of the Series B Preferred Stock into shares of 
common  stock,  adjusted  for  the  value  allocated  to  the  warrants,  of  $4.79  per  share  and  the  fair  market 
value of the Company’s common stock of $5.65 on the date of issuance of the Series B Preferred Stock. 
These amounts have been charged to accumulated deficit with the offsetting credit to additional paid-in-
capital. The  Company  has treated  the  deemed  dividend  on  preferred  stock  as  a reconciling  item  on  the 
consolidated  statements  of  operations  to  adjust  its  reported  net  loss,  together  with  any  preferred  stock 
dividends  recorded  during  the  applicable  period,  to  loss  available  to  common  stockholders  in  the 
consolidated statements of operations. 

For  the  year  ended  December  31,  2007,  the  deemed  dividend  on  the  Series  A  Preferred  Stock  was 
calculated using the difference between the agreed-upon conversion price of the Series A Preferred Stock 
into  shares  of  common  stock  of  $8.00  per  share  and  the  fair  market  value  of  the  Company’s  common 
stock of $8.21 on the date of issuance of the Series A Preferred Stock.  

For  the  year  ended  December  31,  2006,  the  deemed  dividend  on  the  Series  A  Preferred  Stock  was 
calculated using the difference between the agreed-upon conversion price of the Series A Preferred Stock 
into  shares  of  common  stock  of  $8.00  per  share  and  the  fair  market  value  of  the  Company’s  common 
stock of $29.27 on the date of issuance of the Series A Preferred Stock. The fair value allocated to the 
Series A Preferred Stock was in excess of the gross proceeds received of $84,000,000 in connection with 
the sale of the Series A Preferred Stock; however, the deemed dividend on the Series A Preferred Stock is 
limited to the gross proceeds received of $84,000,000.  

The Company recorded preferred stock dividends of $4,104,000, $4,200,000 and $2,998,000 for the years 
ended December 31, 2008, 2007 and 2006, respectively. For all periods except for the three months ended 
December 31, 2007, the Company declared cash dividends for payment of the preferred stock dividends. 
For the three months ended December 31, 2007, the Company elected to issue an additional 65,625 shares 
of Series A Preferred Stock as a payment-in-kind of dividends. 

F-40 

 
 
  
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

10.  COMMON STOCK AND WARRANTS. 

In March 2008, in connection with the Company’s issuance of the Series B Preferred Stock, as discussed 
in Note 9, the Company issued warrants to purchase an aggregate of 3,076,923 shares of common stock at 
an exercise price of $7.00 per share.  

In March 2008, in connection with the Company’s extension of its related party note, as discussed in Note 
7, it issued warrants to purchase 100,000 of common stock at an exercise price of $8.00 per share. 

In  May  2008,  in  connection  with  the  Company’s  issuance  of  additional  Series  B  Preferred  Stock,  as 
discussed in Note 9, the Company issued warrants to purchase an aggregate of 442,305 shares of common 
stock at an exercise price of $7.00 per share. 

In May 2008, the Company entered into a Placement Agent Agreement with Lazard Capital Markets LLC 
(the  ―Placement  Agent‖),  relating  to  the  sale  by  the  Company  of  an  aggregate  of  6,000,000  shares  of 
common stock and warrants to purchase an aggregate of 3,000,000 shares of common stock at an exercise 
price of $7.10 per share of common stock for an aggregate purchase price of $28,500,000. The warrants 
are exercisable at any time during the period commencing on the date that is six months and one day from 
the  date  of  the  warrants  and  ending  five  years  from  the  date  of  the  warrants.  On  May  29,  2008,  the 
Company consummated the offering. Upon issuance, the Company recorded $26,648,000, net of issuance 
costs, in stockholders’ equity.  

In May 2006, the Company issued to 45 accredited investors an aggregate of 5,496,583 shares of common 
stock  at  a  price  of  $26.38  per  share,  for  an  aggregate  purchase  price  of  $145.0  million  in  cash.  The 
Company  designated  the  net  proceeds  of  approximately  $138.0  million,  net  of  capital  raising  fees  and 
expenses, for construction of additional ethanol plants and working capital. The Company also issued to 
the investors warrants to purchase an aggregate of 2,748,297 shares of common stock at an exercise price 
of $31.55 per share. These warrants expired unexercised in February 2007.  

In February 2004, upon completion of the Share Exchange Transaction, the Company issued warrants to 
purchase  230,000  additional  shares  of  common  stock  at  an  exercise  price  of  $0.0001  and  expiring  on 
March  23,  2009  that  vested  ratably  over  a  period  of  two  years  from  the  date  of  the  Share  Exchange 
Transaction. The fair value of the warrants were amortized over two years, resulting in non-cash expense 
of $0 for the years ended December 31, 2008 and 2007 and $1,316,364 for the year ended December 31, 
2006.  

The following table summarizes warrant activity for the years ended December 31, 2008, 2007 and 2006 
(number of shares in thousands): 

Balance at December 31, 2005 
  Warrants granted 
  Warrants exercised 
Balance at December 31, 2006 
  Warrants exercised 
  Warrants expired 
Balance at December 31, 2007 
  Warrants granted 
Balance at December 31, 2008 

Number of 
Shares 

2,905 
3,442 
(2,747) 
3,600 
(128) 
(3,472) 
— 
6,619 
6,619 

Price per 
Share 
$0.0001 - $5.00 
$14.41 – $31.55 
$0.0001 - $5.00 
$0.0001 – $31.55 
$0.0001 – $5.00 
$3.00 – $31.00 

$7.00 – $8.00 
$7.00 – $8.00 

F-41 

Weighted 
Average 
Exercise Price 

$    3.26 
27.66 
3.28 
27.57 
2.84 
27.45 
— 
7.06 
$  7.06 

 
 
  
 
 
 
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

11.  STOCK-BASED COMPENSATION. 

The Company has three equity incentive compensation plans: an Amended 1995 Incentive Stock Plan, a 
2004 Stock Option Plan and a 2006 Stock Incentive Plan. 

Amended  1995 Incentive  Stock  Plan  – The  Amended  1995  Incentive  Stock  Plan  was carried  over  from 
Accessity as a result of the Share Exchange Transaction. The plan authorized the issuance of incentive 
stock options (―ISOs‖) and non-qualified stock options (―NQOs‖), to the Company’s employees, directors 
or  consultants  for  the  purchase  of  up  to  an  aggregate  of  1,200,000  shares  of  the  Company’s  common 
stock. On July 19, 2006, the Company terminated the Amended 1995 Incentive Stock Plan, except to the 
extent of issued and outstanding options then existing under the plan. The Company had 20,000, 40,000 
and  63,000  stock  options  outstanding  under  its  Amended  1995  Incentive  Stock  Plan  at  December  31, 
2008, 2007 and 2006, respectively. 

2004 Stock Option Plan – The 2004 Stock Option Plan authorized the issuance of ISOs and NQOs to the 
Company’s officers, directors or key employees or to consultants that do business with the Company for 
up to an aggregate of 2,500,000 shares of common stock. On September 7, 2006, the Company terminated 
the 2004 Stock Option Plan, except to the extent of issued and outstanding options then existing under the 
plan. The  Company  had  110,000,  185,000 and  405,000  stock  options  outstanding  under  its 2004  Stock 
Option Plan at December 31, 2008, 2007 and 2006, respectively.  

On  August  10,  2005,  the  Company  granted  options  to  purchase  an  aggregate  of  425,000  shares  of  the 
Company’s  common  stock  at  an  exercise  price  equal  to  $8.03,  the  closing  price  per  share  of  the 
Company’s common stock on the day immediately preceding that date, to its Chief Financial Officer. The 
options vested as to 85,000 shares immediately and 85,000 shares were to vest on each of the next four 
anniversaries of the date of grant. The options were to expire 10 years following the date of grant. Since 
the  options  were  granted  at  par  with  the  market  price  of  the  stock,  no  non-cash  charge  was  recorded. 
Upon  the  retirement  of  the  Chief  Financial  Officer  on  December  14,  2006,  the  unvested  stock  options 
related to this grant were forfeited, except for the options allotted under a consulting agreement entered 
into with the retired Chief Financial Officer on December 14, 2006. The consulting agreement provided 
for the immediate vesting of 42,500 stock options on December 14, 2006, and an additional 42,500 stock 
options  vested  on  August 15,  2007,  the  last  day  of  the  term  of  the  consulting  agreement,  provided  the 
obligations  under  the  consulting  agreement  were  fulfilled  by  the  retired  Chief  Financial  Officer.  The 
Company accounted for these options under the provisions of SFAS No. 123(R) and EITF Issue No. 96-
18,  Accounting  for  Equity  Instruments  That  Are  Issued  to  Other  Than  Employees  for  Acquiring,  or  in 
Conjunction  with  Selling,  Goods  or  Services,  and  accordingly,  recorded  compensation  expense  for  the 
unvested stock options based on the fair value of those options at the end of the reporting period based on 
the  Black-Scholes  option-pricing  model  with  inputs  of:  the  closing  stock  price  on  the  last  day  of  the 
reporting period, an exercise price of $8.03, the remaining contractual term through August 15, 2007, and 
volatility of 73.1%. The Company recorded $151,000 and $312,000 in stock-based compensation expense 
relating to these options for the years ended December 31, 2007 and 2006, respectively. 

On  August  10,  2005,  the  Company  granted  options  to  purchase  an  aggregate  of  75,000  shares  of  the 
Company’s  common  stock  at  an  exercise  price  equal  to  $8.03,  the  closing  price  per  share  of  the 
Company’s  common  stock  on  the  day  immediately  preceding  that  date,  to  a  consultant.  The  options 
vested  as  to  15,000  shares  immediately  and  15,000  shares  were  to  vest  on  each  of  the  next  four 
anniversaries of the date of grant. The options were to expire 10 years following the date of grant. Under 
the  guidelines  of  EITF  Issue  No.  96-18,  based  on  the  consultant  meeting  its  obligations  under  the 
consulting agreement, the Company recorded compensation expense based on the fair value of the stock 
options  at  the  vesting  dates  and  on  the  last  day  of  the  reporting  period  for  the  unvested  stock  options, 

F-42 

 
 
  
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

based on the Black-Scholes option-pricing model with inputs of: an exercise price of $8.03, the closing 
stock  price,  a  contractual  term  of  10  years,  and  volatility  of  53.6%.  Beginning  in  December  2006  the 
consultant stopped providing services and will not be providing services in the future under the existing 
consulting  agreement.  As  a  result,  the  unvested  stock  options  were  forfeited.  The  Company  recorded 
share-based compensation expense of $174,000 for the year ended December 31, 2006 relating to these 
options.  

A summary of the status of Company’s stock option plans as of December 31, 2008, 2007 and 2006 and 
of  changes  in  options  outstanding  under  the  Company’s  plans  during  those  years  are  as  follows  (in 
thousands, except exercise prices): 

2008 

Years Ended December 31, 
2007 

2006 

Weighted 
Average 
Exercise 
Price 

$7.03 
— 

          — 
   6.55 
7.37 

$7.37 

Weighted 
Average 
Exercise 
Price 

$7.42 
— 
7.79 

         — 

7.03 

$7.11 

Number of 
Shares 

468 
— 
(243) 
— 
225 

185 

Number 
of Shares 

225 
— 
— 
(95) 
130 

130 

Weighted  
Average 
Exercise 
Price 

$7.53 
— 
7.06 
8.04 
7.42 

Number  
of Shares 

927 
— 
(196) 
(263) 
468 

297 

     $7.36 

Outstanding at beginning of year 
  Granted 
  Exercised 
  Terminated 
Outstanding at end of year 

Options exercisable at end of year 

Stock options outstanding as of December 31, 2008, were as follows (number of shares in thousands):  

Options Outstanding 

Options Exercisable 

Range of 
Exercise 
Prices 

$4.88-$6.63 
$8.25-$8.30 

Number 
Outstanding 

50 
80 
130 

Weighted 
Average 
Remaining 
Contractual 
Life 

Weighted 
Average 
Exercise 
Price 

4.30 
6.57 

$5.95 
$8.26 

Weighted 
Average 
Exercise 
Price 

$5.95 
$8.26 

Number 
Exercisable 

50 
80 
130 

The  total  intrinsic  value  of  options  outstanding  was  approximately  $0  and  $267,000  at  December  31, 
2008  and  2007,  respectively.  The  intrinsic  value  for  exercisable  options  was  $0  and  $203,000  at 
December  31,  2008  and  2007,  respectively.  The  total  intrinsic  value  for  stock  options  exercised  was 
approximately  $0,  $101,000  and  $3,833,000  for  the  years  ended  December  31,  2008,  2007  and  2006, 
respectively.  

There  were  40,000  and  66,034  unvested  options  with  weighted-average  grant-date  fair  values  of  $6.63 
and $7.56, at December 31, 2007 and 2006, respectively. There were no unvested options at December 
31, 2008. 

2006 Stock Incentive Plan – The 2006 Stock Incentive Plan authorizes the issuance of options, restricted 
stock, restricted stock units, stock appreciation rights, direct stock issuances and other stock-based awards 

F-43 

 
 
  
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

to  the  Company’s  officers,  directors  or  key  employees  or  to  consultants  that  do  business  with  the 
Company for up to an aggregate of 2,000,000 shares of common stock.  

The Company grants to certain employees and directors shares of restricted stock under its 2006 Stock 
Incentive Plan pursuant to restricted stock agreements. A summary of unvested restricted stock activity is 
as follows (shares in thousands): 

Unvested at January 1, 2006 
Issued 
Vested 
Unvested at December 31, 2006 
Issued 
Vested 
Canceled 
Unvested at December 31, 2007 
Issued 
Vested 
Canceled 
Unvested at December 31, 2008 

Weighted 
Average 
Grant Date  
Fair Value 

$  — 

13.06 
13.06 
13.06 
15.11 
13.14 
13.72 
13.07 
3.65 
7.78 
13.06 
7.11 

$ 

Number of 
Shares 

— 
946 
(281) 
665 
19 
(140) 
(36) 
508 
630 
(275) 
(111) 
752 

Adoption  of  SFAS  No.  123(R)  –  Upon  the  Company’s  adoption  of  SFAS  No.  123(R)  in  2006,  the 
Company used the modified prospective method which requires that share-based compensation expense 
be recorded for any employee options granted after the adoption date and for the unvested portion of any 
employee options outstanding as of the adoption date.  

The Company’s determination of fair value is affected by the Company’s common stock price as well as 
the  assumptions  discussed  above  that  require  management’s  judgment.  As  permitted  under  SFAS 
No. 123(R), the Company continued to use the Black-Scholes option-pricing model in order to calculate 
the compensation costs of employee stock-based compensation. Such model requires the use of subjective 
assumptions, including the expected life of the option, the expected volatility of the underlying stock, and 
the  expected  dividend  on  the  stock.  For  the  years  ended  December  31,  2008,  2007  and  2006,  the 
Company did not grant any options. 

SFAS  No.  123(R)  requires  forfeitures  to  be  estimated  at  the  time  of  grant  and  revised,  if  necessary,  in 
subsequent  periods  if  actual  forfeitures  differ  from  those  estimates.  Based  on  historical  experience,  the 
Company estimated future unvested option forfeitures at 3% as of December 31, 2008. 

Stock-based  compensation  expense  related  to  employee  and  non-employee  stock  grants,  options  and 
warrants recognized in income were as follows (in thousands): 

Years Ended December 31, 

2008 

2007 

2006 

Employees  
Non-employees  
Total stock-based compensation expense 

$ 

$ 

2,232 
783 
3,015 

$ 

$ 

1,671 
554 
2,225 

$ 

$ 

4,466 
1,782 
6,248 

F-44 

 
 
  
 
 
 
 
 
 
 
 
  
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

Effective  with  the  adoption  of  SFAS  No.  123(R),  stock-based  compensation  expense  related  to  the 
Company’s stock-based compensation arrangements attributable to employees is recorded as a component 
of general and administrative expense in the consolidated statements of operations. 

SFAS  No.  123(R)  requires  that  cash  flows  resulting  from  tax  deductions  in  excess  of  the  cumulative 
compensation cost recognized for options exercised (i.e., excess tax benefits) be classified as cash inflows 
from financing activities and cash outflows from operating activities. The aggregate amount of cash the 
Company received from the exercise of stock options was $1,894,000 and $1,303,000 for the years ended 
December 31,  2007  and  2006,  respectively,  which  shares,  consistent  with  prior  periods,  were  newly 
issued common stock. There were no options exercised during the year ended December 31, 2008. Prior 
to  the  adoption  of  SFAS  No. 123(R),  the  Company  reported  the  full  tax  benefits  resulting  from  the 
exercise  of  stock  options  as  operating  cash  flows.  Prior  to  adopting  SFAS  No. 123(R),  the  Company 
accounted  for  its  employee  stock-based  compensation  in  accordance  with  Accounting  Principles  Board 
Opinion (―APB‖) No. 25, Accounting for Stock Issued to Employees, and related interpretations. Pursuant 
to  APB  No. 25,  the  Company  did  not  record  share-based  compensation,  but  followed  the  disclosure 
requirements of SFAS No. 123. The Company’s financial results for prior periods have not been restated.  

At  December  31,  2008,  the  total  compensation  cost  related  to  unvested  awards  which  had  not  been 
recognized was $5,972,000 and the associated weighted-average period over which the compensation cost 
attributable to those unvested awards would be recognized is 2.5 years.  

12.  CUMULATIVE EFFECT ADJUSTMENT. 

In  September  2006,  the  Commission  issued  SAB  No.  108,  Topic  1N,  Financial  Statements  — 
Considering the Effects of Prior Year Misstatements When Quantifying Misstatements in the Current Year 
Financial Statements. SAB No. 108 was issued in order to eliminate the diversity of practice surrounding 
how public companies quantify financial statement misstatements.  

SAB  No.  108  permits  existing  public  companies  to  initially  apply  its  provisions  either  by  (i)  restating 
prior  financial  statements  or  (ii)  recording  the  cumulative  effect  to  the  carrying  values  of  assets  and 
liabilities as of January 1, 2006 with an offsetting adjustment recorded to the opening balance of retained 
earnings. The Company elected to record the effects of applying SAB No. 108 using the cumulative effect 
transition method.  

In allocating the purchase price with respect to the Kinergy acquisition, no adjustment was made to record 
a  deferred  tax  liability  for  the  difference  between  the  recorded  value  of  the  assets  acquired  and  their 
corresponding  tax  basis.  Such  an  adjustment  would  have  increased  goodwill  by  the  amount  of  the 
deferred  tax  liability  recorded.  In  addition,  goodwill  would  have  been  reduced  by  the  amount  of  any 
valuation allowance attributable to any pre-acquisition deferred tax asset of the Company that could more 
likely than not have been utilized against the recorded deferred tax liability. As a result of applying the 
guidance  in  SAB  No.  108  to  this  adjustment,  the  Company  recorded  an  adjustment  of  $1,043,000  to 
beginning retained earnings as of January 1, 2006. 

13.  COMMITMENTS AND CONTINGENCIES. 

Commitments – The following is a description of significant commitments at December 31, 2008: 

Operating Leases–Future minimum lease payments required by non-cancelable operating leases in effect 
at December 31, 2008 are as follows (in thousands): 

F-45 

 
 
  
 
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

Years Ended  
December 31, 
2009 
2010 
2011 
2012 
2013 
    Total 

Amount 
  $  3,103 
3,082 
2,701 
2,035 
1,657 
  $ 12,578 

Total  rent  expense  during  the  years  ended  December  31,  2008,  2007  and  2006  was  $2,967,000, 
$1,793,000 and $714,000, respectively. Included in the amounts above is approximately $1.5 million in 
which the Company has been notified that it is in violation of certain of its lease covenants, which the 
Company disputes. The Company continues to be current on its payments to the lessor.  

Purchase Commitments – At December 31, 2008, the Company had purchase contracts with its suppliers 
to  purchase  certain  quantities  of  ethanol,  corn  and  denaturant.  These  fixed-  and  indexed-price 
commitments  will  be  delivered  throughout  2009. Outstanding  balances  on  fixed-price  contracts  for  the 
purchases of materials are indicated below and volumes indicated in the indexed-price portion of the table 
are  additional  purchase  commitments  at  publicly-indexed  sales  prices  determined  by  market  prices  in 
effect on their respective transaction dates (in thousands): 

Corn 
Ethanol 
Denaturant 
Total 

Ethanol (gallons) 
Corn (bushels) 

Fixed-Price 
Contracts 

$ 

$ 

19,611 
8,056 
1,292 
28,959 

Indexed-Price 
Contracts 
(Volume) 

46,922 
12,035 

Sales Commitments – At December 31, 2008, the Company had entered into sales contracts with its major 
customers  to  sell  certain  quantities  of  ethanol,  WDG  and  syrup.  The  volumes  indicated  in  the  indexed 
price contracts table will be sold at publicly-indexed sales prices determined by market prices in effect on 
their respective transaction dates (in thousands): 

Ethanol 
WDG 
Syrup 

Total 

Fixed-Price 
Contracts 

$ 

$ 

4,888 
 13,642 
2,995 
21,525 

F-46 

 
 
  
 
 
 
 
 
 
 
 
 
 
 
 
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

Ethanol (gallons) 

WDG (tons) 

Indexed-Price 
Contracts 
(Volume) 

60,617 

         24 

The  Company  recorded  in  cost  of  goods  sold  estimated  losses  on  its  fixed-price  purchase  and  sale 
commitments  of  approximately  $4,687,000  for  the  year  ended  December  31,  2008.  There  were  no 
estimated losses recorded for the years ended December 31, 2007 and 2006.  

Contingencies – The following is a description of significant contingencies at December 31, 2008: 

Litigation – General – The Company is subject to legal proceedings, claims and litigation arising in the 
ordinary course of business. While the amounts claimed may be substantial, the ultimate liability cannot 
presently be determined because of considerable uncertainties that exist. Therefore, it is possible that the 
outcome of those legal proceedings, claims and litigation could adversely affect the Company’s quarterly 
or  annual  operating  results  or  cash  flows  when  resolved  in  a  future  period.  However,  based  on  facts 
currently available, management believes such matters will not adversely affect the Company’s financial 
position, results of operations or cash flows.  

Litigation  –  Western  Ethanol  Company  –  On  January  9,  2009,  Western  Ethanol  Company,  LLC 
(―Western  Ethanol‖)  filed  a  complaint  in  the  Superior  Court  of  the  State  of  California  (the  ―Superior 
Court‖) naming Kinergy as defendant. In the complaint, Western Ethanol alleges that Kinergy breached 
an  alleged  agreement  to  buy  and  accept  delivery  of  a  fixed  amount  of  ethanol.  On  January  12,  2009, 
Western Ethanol filed an application for issuance of right to attach order and order for issuance of writ of 
attachment.  On  February  10,  2009,  the  Superior  Court  granted  the  right  to  attach  order  and  order  for 
issuance of writ of attachment against Kinergy in the amount of approximately $3.7 million. On February 
11, 2009, Kinergy filed an answer to the complaint. Kinergy intends to vigorously defend against Western 
Ethanol’s claims. 

Litigation  –  Delta-T  Corporation  –  On  August  18,  2008,  Delta-T  Corporation  filed  suit  in  the  United 
States District Court for the Eastern District of Virginia (the ―Virginia Federal Court case‖), naming The 
Company  as  a  defendant,  along  with  its  subsidiaries  Pacific  Ethanol  Stockton,  LLC,  Pacific  Ethanol 
Imperial, LLC, Pacific Ethanol Columbia, LLC, Pacific Ethanol Magic Valley, LLC, and Pacific Ethanol 
Madera,  LLC. The  suit  alleges  breaches  of  the  parties’  Engineering,  Procurement  and  Technology 
License Agreements, breaches of a subsequent term sheet and letter agreement and breaches of indemnity 
obligations.   

All  of  the  defendants  have  moved  to  dismiss  the  Virginia  Federal  Court  Case  for  lack  of  personal 
jurisdiction  and  on  the  ground  that  all  disputes  between  the  parties  must  be  resolved  through  binding 
arbitration, and, in the alternative, moving to stay the Virginia Federal Court Case pending arbitration. In 
January 2009, these motions were granted by the Court, compelling the case to arbitration. The complaint 
seeks specified contract damages of approximately $6.5 million, along with other unspecified damages. 
The Company intends to vigorously defend against Delta-T Corporation’s claims.  

Litigation  –  Barry  Spiegel  –  State  Court  Action  –  On  December  23,  2005,  Barry  J.  Spiegel,  a  former 
shareholder and director of Accessity, filed a complaint in the Circuit Court of the 17th Judicial District in 
and for Broward County, Florida (Case No. 05018512) (the ―State Court Action‖) against Barry Siegel, 
Philip  Kart,  Kenneth  Friedman  and  Bruce  Udell  (collectively,  the  ―Individual  Defendants‖).  Messrs. 

F-47 

 
 
  
 
 
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

Siegel, Udell and Friedman are former directors of Accessity and Pacific Ethanol. Mr. Kart is a former 
executive officer of Accessity and the Company.  

The State Court Action relates to the Share Exchange Transaction and purports to state the following five 
counts  against  the  Individual  Defendants:  (i)  breach  of  fiduciary  duty,  (ii)  violation  of  the  Florida 
Deceptive  and  Unfair  Trade  Practices  Act,  (iii)  conspiracy  to  defraud,  (iv)  fraud,  and  (v)  violation  of 
Florida’s  Securities  and  Investor  Protection  Act.  Mr.  Spiegel  based  his  claims  on  allegations  that  the 
actions of the Individual Defendants in approving the Share Exchange Transaction caused the value of his 
Accessity common stock to diminish and is seeking approximately $22.0 million in damages. On March 
8, 2006, the Individual Defendants filed a motion to dismiss the State Court Action. Mr. Spiegel filed his 
response  in  opposition  on  May  30,  2006.  The  Court  granted  the  motion  to  dismiss  by  Order  dated 
December 1, 2006, on the grounds that, among other things, Mr. Spiegel failed to bring his claims as a 
derivative action. 

On February 9, 2007, Mr. Spiegel filed an amended complaint which purports to state the following five 
counts: (i) breach of fiduciary duty, (ii) fraudulent inducement, (iii) violation of Florida’s Securities and 
Investor Protection Act, (iv) fraudulent concealment, and (v) breach of fiduciary duty of disclosure. The 
amended complaint included the Company as a defendant, but it was subsequently voluntarily dismissed 
on  August  27,  2007,  by  Mr.  Spiegel  as  to  the  Company.  On  March  23,  2009,  Mr.  Spiegel  filed  an 
amended  complaint  which  renewed  his  previously  voluntarily  dismissed  case  against  the  Company. 
Further Mr.  Spiegel seeks depositions  of  Barry  Siegel  and  Philip  B.  Kart  on  or around  April  30, 2009. 
The Company intends to vigorously defend against Mr. Spiegel’s claims. 

Litigation  –  Barry  Spiegel  –  Federal  Court  Action  –  On  December  28,  2006,  Barry  J.  Spiegel,  filed  a 
complaint  in  the  United  States  District  Court,  Southern  District  of  Florida  (Case  No.  06-61848)  (the 
―Federal Court Action‖) against the Individual Defendants and the Company. The Federal Court Action 
relates to the Share Exchange Transaction and purports to state the following three counts: (i) violations 
of  Section  14(a)  of  the  Exchange  Act  and  SEC  Rule  14a-9  promulgated  thereunder,  (ii)  violations  of 
Section 10(b) of the Exchange Act and Rule 10b-5 promulgated thereunder, and (iii) violation of Section 
20(A) of the  Exchange  Act. The  first two counts are alleged  against the  Individual  Defendants and the 
Company and the third count is alleged solely against the Individual Defendants. Mr. Spiegel bases his 
claims on, among other things, allegations that the actions of the Individual Defendants and the Company 
in connection with the Share Exchange Transaction resulted in a share exchange ratio that was unfair and 
resulted  in  the  preparation  of  a  proxy  statement  seeking  shareholder  approval  of  the  Share  Exchange 
Transaction that contained material misrepresentations and omissions. Mr. Spiegel is seeking in excess of 
$15.0 million in damages.  

Mr. Spiegel amended the Federal Court Action on March 5, 2007, and the Company and the Individual 
Defendants filed a Motion to Dismiss the amended pleading on April 23, 2007. Plaintiff Spiegel sought to 
stay his own federal case, but the Motion was denied on July 17, 2007. The Court required Mr. Spiegel to 
respond  to  the  Company’s  Motion  to  Dismiss.  On  January  15,  2008,  the  Court  rendered  an  Order 
dismissing the claims under Section 14(a) of the Exchange Act on the basis that they were time barred 
and  that  more  facts  were  needed  for  the  claims  under  Section  10(b)  of  the  Exchange  Act.  The  Court, 
however, stayed the entire case pending resolution of the State Court Action.  

F-48 

 
 
  
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

14.  FAIR VALUE MEASUREMENTS. 

The fair value hierarchy established by SFAS No. 157 prioritizes the inputs used in valuation techniques 
into three levels as follows: 

  Level 1 – Observable inputs – unadjusted quoted prices in active markets for identical assets and 

liabilities; 

  Level 2 – Observable inputs other than quoted prices included in Level 1 that are observable for 

the asset or liability through corroboration with market data; and 

  Level 3 – Unobservable inputs – includes amounts derived from valuation models where one or 

more significant inputs are unobservable. 

In accordance with SFAS No. 157, the Company has classified its investments in marketable securities 
and derivative instruments into these  levels depending on the inputs used to determine their fair values. 
The Company’s investments in marketable securities consist of money market funds which are based on 
quoted prices and are designated as Level 1. The Company’s derivative instruments consist of commodity 
positions and interest rate caps and swaps. The fair value of the commodity positions are based on quoted 
prices on the commodity exchanges and are designated as Level 1; the fair value of the interest rate caps 
and  certain  swaps  are  based  on  quoted  prices  on  similar  assets  or  liabilities  in  active  markets  and 
discounts to reflect potential credit risk to lenders and are designated as Level 2; and certain interest rate 
swaps are based on a combination of observable inputs and material unobservable inputs.  

The following table summarizes fair value measurements by level at December 31, 2008 (in thousands): 

Assets: 
Investments in marketable securities 

Interest rate caps and swaps 

Total Assets 

Assets:: 
Liabilities: 
Commodity derivative liabilities 

Interest rate caps and swaps 

Total Liabilities 

Level 1 

Level 2 

Level 3 

Total 

$ 

7,780 

$ 

— 

$ 

7,780 

$ 

— 

7 

7 

$ 

$ 

951 

— 

951 

$ 

$ 

— 

1,307 

1,307 

$ 

$ 

$ 

$ 

— 

— 

— 

$ 

7,780 

7 

$ 

7,787 

— 

5,245 

5,245 

$ 

$ 

951 

6,552 

7,503 

For fair value measurements using significant unobservable inputs (Level 3), a description of the inputs 
and the information used to develop the inputs is required along with a reconciliation of Level 3 values 
from the prior reporting period. The Company has five pay-fixed and receive variable interest rate swaps 
in  liability  positions  at  December  31,  2008.  The  value  of  these  swaps  at  December  31,  2008  was 
materially affected by the Company’s credit. A pre-credit fair value of each swap was determined using 
conventional  present  value  discounting  based  on  the  3-year  Euro  dollar  futures  curves  and  the  LIBOR 
swap  curve  beyond  3  years,  resulting  in  a  liability  of  approximately  $13,111,000.  To  reflect  the 
Company’s current financial condition and debt restructuring efforts, a recovery rate of 40% was applied 
to that value. Management elected the 40% recovery rate in the absence of any other company-specific 
information. As the recovery rate is a material unobservable input, these swaps are considered Level 3. It 
is  the  Company’s  understanding  that  40%  reflects  the  standard  market  recovery  rate  provided  by 

F-49 

 
 
  
 
 
 
  
  
  
  
  
  
  
  
 
 
 
 
 
  
  
  
  
  
  
 
 
 
 
 
  
  
 
 
 
 
  
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

Bloomberg  in  probability  of  default  calculations.  The  Company  applied  their  interpretation  of  the  40% 
recovery rate to the swap liability reducing the liability by 60% to approximately $5,245,000 to reflect the 
credit risk to counterparties, resulting in a gain of approximately $7,866,000 in other income (expense) in 
the consolidated statements of operations. Further, due to the current financial status of the Company and 
the remote chance of it making its anticipated LIBOR-based interest payments under SFAS No. 133, all 
hedge  accounting  was  disallowed  as  of  December  31,  2008,  and  the  amount  in  accumulated  other 
comprehensive income was recorded as a loss of approximately $4,565,000 in other income (expense) in 
the consolidated statements of operations. At September 30, 2008, the Company’s last reporting period, 
the  Company  had  discounted  these  swaps  435  basis  points  over  LIBOR  reflecting  the  then  current 
borrowing rate. 

Beginning balance, September 30, 2008 

Transfers to Level 3 (from Level 2) 
Ending balance, December 31, 2008 

Level 3 

$ 

$ 

— 

(5,245) 
(5,245) 

At  September  30,  2008,  the  credit-affected  swap  liability  totaled  approximately  $7,464,000,  during  the 
three months ended December 31, 2008, approximately $719,000 of losses were realized in other income 
(expense).  At December 31, 2008, the unrealized liability value was approximately $5,245,000. 

15.  RELATED PARTY TRANSACTIONS. 

Related  Customers  –  The  Company  entered  into  three  consecutive  six-month  sales  contracts  with 
Southern Counties Oil Co., an entity owned by a former director and stockholder of the Company. The 
contract  periods  were  from  October  1,  2005  through  March  31,  2007  for  fuel  grade  ethanol  to  be 
delivered  ratably  per  month  at  varying  prices  based  on  delivery  destinations  in  California,  Nevada  and 
Arizona.  Under  these  contracts,  the  Company  sold  a  total  of  13,944,000  gallons.  Sales  to  Southern 
Counties Oil Co. under these contracts totaled $6,039,000 and $16,985,000 for the years ended December 
31,  2007  and  2006,  respectively.  There  were  no  sales  under  these  contracts  during  the  year  ended 
December  31,  2008  and  there  were  no  accounts  receivable  from  Southern  Counties  Oil  Co.  related  to 
these contracts at December 31, 2008 and 2007. 

The Company sells corn and WDG to Tri J Land and Cattle (―Tri J‖), an entity owned by a director of the 
Company.  The  Company  is  not  under  contract  with  Tri  J,  but  currently  sells  corn  on  a  spot  basis  as 
needed. Sales to Tri J totaled $1,300, $166,000 and $0 for the years ended December 31, 2008, 2007 and 
2006, respectively. Accounts receivable from Tri J totaled $1,300 and $7,000 at December 31, 2008 and 
2007, respectively. 

Related  Vendors  –  The  Company  contracts  for  certain  transportation  services  for  its  products  to  a 
transportation company, in which a senior officer of the transportation company became a member of the 
Company’s  Board  of  Directors.  For  the  year  ended  December  31,  2008,  the  Company  purchased 
transportation  services  of  $1,487,000.  As  of  December  31,  2008,  the  Company  had  $608,000  of 
outstanding accounts payable to this vendor. There were no additional purchases during the years ended 
December 31, 2007 and 2006. 

The Company purchased 18,628 bushels of corn from Jones Villere Farms (―JVF‖), a company owned by 
a director of the Company. Purchases from JVF totaled $95,000 for the year ended December 31, 2007. 
There were no additional purchases during the years ended December 31, 2008 and 2006. There were no 
accounts payable due to JVF at December 31, 2008 and 2007. 

F-50 

 
 
  
 
 
 
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

The  Company  purchased  35,219  bushels  of  corn  from  Llanada  Farms  (―Llanada‖),  an  affiliate  of  a 
director  of  the  Company  for  the  year  ended  December  31,  2006.  Purchases  from  Llanada  under  this 
contract  totaled  $112,000  for  the  year  ended  December  31,  2006.  There  were  no  additional  purchases 
during the years ended December 31, 2008 and 2007.  

Plant  Development  and  Construction  –  In  2006,  the  Company  entered  into  an  agreement  with  a 
construction  company  to  build  an  ethanol  production  facility  in  Madera,  California.  An  officer  of  the 
construction company was a former member of the board of directors of PEI California. The Company 
had  outstanding  liabilities  to  the  construction  company  in  the  amount  of  $900,000  as  of  December  31, 
2007.  

Financing  Activities  –  During  the  year  ended  December  31,  2008,  the  Company  sold  $33,500  of  its 
business  energy  tax  credits  to  certain  employees  of  the  Company  on  the  same  terms  and  conditions  as 
others to whom the Company sold credits.  

As discussed in Note 9, on March 27, 2008, the Company consummated the sale of its Series B Preferred 
Stock with Lyles United, LLC. In addition, as of December 31, 2008, the Company had notes payable of 
$31,500,000 and accrued interest payable of $243,000 to Lyles United, LLC and its affiliates.  

Also as discussed in Note 9, on May 22, 2008, the Company consummated the sale of additional shares of 
its Series B Preferred Stock to Neil M. Koehler, Bill Jones, Paul P. Koehler and Thomas D. Koehler. 

16.  QUARTERLY FINANCIAL DATA. 

The  Company’s  unaudited  quarterly  results  of  operations  for  the  years  ended  December  31,  2008  and 
2007 are as follows (in thousands): 

First  
Quarter 

Second  
Quarter 

Third  
Quarter 

Fourth  
Quarter 

December 31, 2008: 

Net sales 
Gross profit (loss) 
Loss from operations 
Net loss 
Preferred stock dividends 
Deemed dividend on preferred stock 
Loss available to common stockholders 

$       161,535 
$        15,658 
$       (81,254) 
$       (35,151) 
$         (1,101) 
$               — 
$       (36,252) 

$ 

  197,974 
$           443 
$       (7,235) 
$       (8,333) 
$       (1,388) 
$          (761) 
$     (10,482) 

$     183,980 
$   (20,285) 
$   (67,916) 
$   (69,167) 
$        (807) 
$              — 
$   (69,974) 

$ 
160,437 
$     (29,221) 
$     (36,743) 
$     (33,896) 
$          (808) 
$              — 
$     (34,704) 

Loss per common share: 
Basic and diluted  

$          (0.90) 

$ 

(0.23) 

$ 

 (1.23) 

$         (0.61) 

F-51 

 
 
  
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
PACIFIC ETHANOL, INC. 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS 

First  
Quarter 

Second  
Quarter 

Third  
Quarter 

Fourth  
Quarter 

$ 

99,242 
$      15,341 
$        5,839 
$        2,975 
$       (1,050) 
$               — 

$ 

113,763 
$      11,121 
$        2,801 
$        2,156 
$       (1,050) 
$                — 

$  118,118 
$      4,759 
$     (1,161) 
$     (4,842) 
$     (1,050) 
$              — 

$ 

130,390 
$        1,678 
$       (5,402) 
$     (14,689) 
$       (1,050) 
$            (28) 

$         1,925 

$        1,106 

$     (5,892) 

$     (15,767) 

$ 

0.05 

$ 

0.03 

$ 

(0.15) 

$         (0.39) 

December 31, 2007: 

Net sales 
Gross profit 
Income (loss) from operations 
Net income (loss) 
Preferred stock dividend 
Deemed dividend on preferred stock 
Income (loss) available to common 

stockholders 

Income (loss) per common share: 

Basic and diluted  

17.  SUBSEQUENT EVENTS.  

Forbearance Agreements 

As  discussed  in  Note  7,  in  February  2009,  the  Company  entered  into  three  separate  forbearance 
agreements with its lenders which were extended in March 2009. These forbearance agreements provide 
that  the  lenders  will  forbear  from  exercising  their  rights  under  their  respective  loan  agreements.  The 
Company  is  attempting  to  negotiate  new  terms  with  its  lenders.  The  outcome  of  these  negotiations  is 
uncertain at this time. 

Notes Payable 

On March 31, 2009, the Company’s Chairman of the Board and Chief Executive Officer provided funds 
totaling approximately $2.0 million for general operating purposes, in exchange for two unsecured notes 
payable from the Company. Interest on the unpaid principal amount accrues at a rate per annum of 8.00%. 
All principal and accrued and unpaid interest on the notes are due and payable on March 31, 2010. 

F-52 

 
 
  
 
 
 
 
 
 
 
 
 
 
 
 
Exhibit 
Number 

INDEX TO EXHIBITS 

Description 

2.1 

2.2 

2.3 

2.4 

2.5 

2.6 

2.7 

3.1 

3.2 

3.3 

3.4 

10.1 

10.2 

10.3 

10.4 

10.5 

10.6 

10.7 

Agreement and Plan of Merger dated March 23, 2005 between the Registrant and Accessity 
Corp. (1) 

Share Exchange Agreement dated as of May 14, 2004 by and among Accessity Corp., Pacific 
Ethanol, Inc., Kinergy Marketing, LLC, ReEnergy, LLC and the other parties named 
therein (1) 

Amendment No. 1 to Share Exchange Agreement dated as of July 29, 2004 by and among 
Accessity Corp., Pacific Ethanol, Inc., Kinergy Marketing, LLC, ReEnergy, LLC and the 
other parties named therein (1) 

Amendment No. 2 to Share Exchange Agreement dated as of October 1, 2004 by and among 
Accessity Corp., Pacific Ethanol, Inc., Kinergy Marketing, LLC, ReEnergy, LLC and the 
other parties named therein (1) 

Amendment No. 3 to Share Exchange Agreement dated as of January 7, 2005 by and among 
Accessity Corp., Pacific Ethanol, Inc., Kinergy Marketing, LLC, ReEnergy, LLC and the 
other parties named therein (1) 

Amendment No. 4 to Share Exchange Agreement dated as of February 16, 2005 by and 
among Accessity Corp., Pacific Ethanol, Inc., Kinergy Marketing, LLC, ReEnergy, LLC and 
the other parties named therein (1) 

Amendment No. 5 to Share Exchange Agreement dated as of March 3, 2005 by and among 
Accessity Corp., Pacific Ethanol, Inc., Kinergy Marketing, LLC, ReEnergy, LLC and the 
other parties named therein (1) 

Certificate of Incorporation of the Registrant (1) 

Certificate of Designations, Powers, Preferences and Rights of the Series A Cumulative 
Redeemable Convertible Preferred Stock (14) 

Certificate of Designations, Powers, Preferences and Rights of the Series B Cumulative 
Convertible Preferred Stock (29) 

Bylaws of the Registrant (1) 

Form of Registration Rights Agreement of various dates between Pacific Ethanol, Inc., a 
California corporation and the investors who are parties thereto (7) 

Form of Placement Warrant dated effective of various dates issued by Pacific Ethanol, Inc., a 
California corporation, to certain placement agents (7) 

Form of Registration Rights Agreement dated effective May 14, 2004 between Pacific 
Ethanol, Inc., a California corporation and the investors who are parties thereto (6) 

Form of Placement Warrant dated effective May 14, 2004 issued by Pacific Ethanol, Inc., a 
California corporation, to certain placement agents (7) 

Form of Registration Rights Agreement of various dates between Pacific Ethanol, Inc., a 
California corporation and the investors who are parties thereto (6) 

Form of Warrant of various dates issued to subscribers to a private placement of securities of 
Pacific Ethanol, Inc., a California corporation (7) 

Form of Registration Rights Agreement dated effective March 23, 2005 between Pacific 
Ethanol, Inc., a California corporation and the investors who are parties thereto (1) 

 
 
Exhibit 
Number 

Description 

10.8 

10.9 

10.10 

10.11 

10.12 

10.13 

10.14 

10.15 

10.16 

10.17 

Form of Warrant dated March 23, 2005 issued by the Registrant to subscribers to a private 
placement of securities by Pacific Ethanol, Inc., a California corporation (1) 

Form of Placement Warrant dated March 23, 2005 issued by the Registrant to certain 
placement agents (1) 

Confidentiality, Non-Competition, Non-Solicitation and Consulting Agreement dated March 
23, 2005 between the Registrant and Barry Siegel (1) 

Confidentiality, Non-Competition, Non-Solicitation and Consulting Agreement dated March 
23, 2005 between the Registrant and Philip B. Kart (1) 

Form of Confidentiality, Non-Competition and Non-Solicitation Agreement dated March 23, 
2005 between the Registrant and each of Neil M. Koehler, Tom Koehler, William L. Jones, 
Andrea Jones and Ryan W. Turner (1) 

Confidentiality, Non-Competition and Non-Solicitation Agreement dated March 23, 2005 
between the Registrant and Neil M. Koehler (1) 

Form of Indemnification Agreement between the Registrant and each of its Executive Officers 
and Directors (#) (14) 

Executive Employment Agreement dated March 23, 2005 between the Registrant and Neil M. 
Koehler (#)(1) 

Executive Employment Agreement dated March 23, 2005 between the Registrant and Ryan 
W. Turner (#)(1) 

Stock Purchase Agreement and Assignment and Assumption Agreement dated March 23, 
2005 between the Registrant and Barry Siegel (1) 

10.18 

Letter Agreement dated March 23, 2005 between the Registrant and Neil M. Koehler (1) 

10.19 

Ethanol Purchase and Marketing Agreement dated March 4, 2005 between Kinergy 
Marketing, LLC, Phoenix Bio-Industries, LLC, Pacific Ethanol, Inc. and Western Milling, 
LLC (2) 

10.20 

Pacific Ethanol Inc. 2004 Stock Option Plan (3) 

10.21 

First Amendment to Pacific Ethanol, Inc. 2004 Stock Option Plan (13) 

10.22 

Amended 1995 Stock Option Plan (4) 

10.23  Warrant dated March 23, 2005 issued by the Registrant to Liviakis Financial 

Communications, Inc. (1) 

10.24 

10.25 

Executive Employment Agreement dated August 10, 2005 between the Registrant and 
William G. Langley (#)(5) 

Ethanol Marketing Agreement dated as of August 31, 2005 by and between Kinergy 
Marketing, LLC and Front Range Energy, LLC (8) 

10.26  Master Revolving Note dated September 24, 2004 of Kinergy Marketing, LLC in favor of 

Comerica Bank (9) 

10.27 

Loan Revision/Extension Agreement dated October 4, 2005 and effective as of June 20, 2005 
between Kinergy Marketing, LLC and Comerica Bank (9) 

 
 
Exhibit 
Number 

10.28 

Description 

Letter Agreement dated as of October 4, 2005 between Kinergy Marketing, LLC and 
Comerica Bank (9) 

10.29 

Guaranty dated October 4, 2005 by Pacific Ethanol, Inc. in favor of Comerica Bank (9) 

10.30 

10.31 

10.32 

10.33 

10.34 

10.35 

Security Agreement dated as of September 24, 2004 executed by Kinergy Marketing, LLC in 
favor of Comerica Bank (12) 

Amended and Restated Phase 1 Design-Build Agreement dated November 2, 2005 by and 
between Pacific Ethanol Madera LLC and W.M. Lyles Co. (10) 

Phase 2 Design-Build Agreement dated November 2, 2005 by and between Pacific Ethanol 
Madera LLC and W.M. Lyles Co. (10) 

Letter Agreement dated November 2, 2005 by and between Pacific Ethanol California, Inc. 
and W.M. Lyles Co. (10) 

Continuing Guaranty dated as of November 3, 2005 by William L. Jones in favor of 
W.M. Lyles Co. (10) 

Continuing Guaranty dated as of November 3, 2005 by Neil M. Koehler in favor of 
W.M. Lyles Co. (10) 

10.36 

Description of Non-Employee Director Compensation (11) 

10.37 

10.38 

10.39 

10.40 

10.41 

10.42 

10.43 

10.44 

Purchase Agreement dated November 14, 2005 between Pacific Ethanol, Inc. and Cascade 
Investment, L.L.C. (11) 

Deposit Agreement dated April 13, 2006 by and between Pacific Ethanol, Inc. and Comerica 
Bank (14) 

Registration Rights and Stockholders Agreement dated as of April 13, 2006 by and between 
Pacific Ethanol, Inc. and Cascade Investment, L.L.C. (14) 

Amendment No. 1 to Ethanol Purchase and Marketing Agreement dated effective as of 
March 4, 2005 between Kinergy Marketing, LLC, Phoenix Bio-Industries, LLC, Pacific 
Ethanol, Inc. and Western Milling, LLC (14) 

Construction and Term Loan Agreement dated April 10, 2006 by and among Pacific Ethanol 
Madera LLC, Comerica Bank and Hudson United Capital, a division of TD Banknorth, N.A. 
(14) 

Construction Loan Note dated April 13, 2006 by Pacific Ethanol Madera LLC in favor of 
Comerica Bank (14) 

Construction Loan Note dated April 13, 2006 by Pacific Ethanol Madera LLC in favor of 
Hudson United Capital, a division of TD Banknorth, N.A. (14) 

Assignment and Security Agreement dated April 13, 2006 by and between Pacific Ethanol 
Madera LLC and Hudson United Capital, a division of TD Banknorth, N.A. (14) 

10.45  Member Interest Pledge Agreement dated April 13, 2006 by Pacific Ethanol Madera LLC in 

favor of Hudson United Capital, a division of TD Banknorth, N.A. (14) 

10.46 

Disbursement Agreement dated April 13, 2006 by and among Pacific Ethanol Madera LLC, 
Hudson United Capital, a division of TD Banknorth, N.A., Comerica Bank and Wealth 
Management Group of TD Banknorth, N.A. (14) 

 
 
Exhibit 
Number 

10.47 

10.48 

10.49 

10.50 

Description 

Amended and Restated Term Loan Agreement effective as of April 13, 2006 by and between 
Lyles Diversified, Inc. and Pacific Ethanol Madera LLC (14) 

Letter Agreement dated as of April 13, 2006 by and among Pacific Ethanol California, Inc., 
Lyles Diversified, Inc. and Pacific Ethanol Madera LLC (14) 

Deed of Trust, Assignment of Leases and Rents, Security Agreement and Fixture Filing dated 
April 13, 2006 by Pacific Ethanol Madera LLC in favor of Hudson United Capital, a division 
of TD Banknorth, N.A. (15) 

Deed of Trust (Non-Construction) Security Agreement and Fixture Filing with Assignment of 
Rents dated April 13, 2006 by Pacific Ethanol Madera LLC in favor of Lyles Diversified, Inc. 
(15) 

10.51 

Securities Purchase Agreement dated as of May 25, 2006 by and among Pacific Ethanol, Inc. 
and the investors listed on the Schedule of Investors attached thereto as Exhibit A (16) 

10.52 

Form of Warrant dated May 31, 2006 (16) 

10.53 

10.54 

10.55 

10.56 

10.57 

10.58 

10.59 

10.60 

Executive Employment Agreement dated as of June 26, 2006 by and between Pacific Ethanol, 
Inc. and John T. Miller (17) 

Executive Employment Agreement dated as of June 26, 2006 by and between Pacific Ethanol, 
Inc. and Christopher W. Wright (17) 

Amended and Restated Ethanol Purchase and Sale Agreement dated as of August 9, 2006 by 
and between Kinergy Marketing, LLC and Front Range Energy, LLC (18) 

Construction Agreement for the Boardman Project between Pacific Ethanol Columbia, LLC 
and Parsons RCIE Inc. dated as of August 28, 2006 (19) 

Engineering, Procurement and Technology License Agreement dated September 6, 2006 by 
and between Delta-T Corporation and PEI Columbia, LLC (*)(21) 

Engineering, Procurement and Technology License Agreement (Plant No. 3) dated September 
6, 2006 by and between Delta-T Corporation and Pacific Ethanol, Inc. (*)(21) 

Engineering, Procurement and Technology License Agreement (Plant No. 4) dated September 
6, 2006 by and between Delta-T Corporation and Pacific Ethanol, Inc. (*)(21) 

Engineering, Procurement and Technology License Agreement (Plant No. 5) dated September 
6, 2006 by and between Delta-T Corporation and Pacific Ethanol, Inc. (*)(21) 

10.61 

Pacific Ethanol, Inc. 2006 Stock Incentive Plan (#)(20) 

10.62 

Form of Employee Restricted Stock Agreement (#)(22) 

10.63 

Form of Non-Employee Director Restricted Stock Agreement (#)(22) 

10.64 

Amendment  No.  1  to  Construction  and  Term  Loan  Agreement  and  Agreement  as  to  Future 
Financing  Transactions  dated  September  29,  2006  by  and  among  Pacific  Ethanol  Madera 
LLC, TD Banknorth, N.A., Comerica Bank and Pacific Ethanol, Inc. (23) 

10.65  Membership Interest Purchase Agreement dated as of October 17, 2006 by and among Eagle 

Energy, LLC, Pacific Ethanol California, Inc. and Pacific Ethanol, Inc. (24) 

 
 
Exhibit 
Number 

Description 

10.66  Warrant to Purchase Common Stock dated October 17, 2006 issued to Eagle Energy, LLC by 

Pacific Ethanol, Inc. (24) 

10.67 

10.68 

10.69 

10.70 

10.71 

10.72 

10.73 

10.74 

10.75 

10.76 

10.77 

10.78 

10.79 

10.80 

Registration Rights Agreement dated as of October 17, 2006 by and between Pacific Ethanol, 
Inc. and Eagle Energy, LLC (24) 

Second Amended and Restated Operating Agreement of Front Range Energy, LLC among the 
members identified therein (as amended by Amendment No. 1 described below) (24) 

Amendment No. 1, dated as of October 17, 2006, of the Second Amended and Restated 
Operating Agreement of Front Range Energy, LLC to Add a Substitute Member and for 
Certain Other Purposes (24) 

Form of Non-Competition Agreement dated as of October 17, 2006 by and among Pacific 
Ethanol, Inc., Front Range Energy, LLC and each of the members of Eagle Energy, LLC (24) 

Amendment to Amended and Restated Ethanol Purchase and Sale Agreement dated October 
17, 2006 between Kinergy Marketing, LLC and Front Range Energy, LLC (24) 

Separation and Consulting Agreement dated December 14, 2006 between Pacific Ethanol, Inc. 
and William G. Langley (25) 

Credit Agreement, dated as of February 27, 2007, by and among Pacific Ethanol Holding Co. 
LLC, Pacific Ethanol Madera LLC, Pacific Ethanol Columbia, LLC, Pacific Ethanol 
Stockton, LLC, Pacific Ethanol Imperial, LLC, and Pacific Ethanol Magic Valley, LLC, as 
borrowers, the lenders party thereto, WestLB AG, New York Branch, as administrative agent, 
lead arranger and sole book runner, WestLB AG, New York Branch, as collateral agent, 
Union Bank of California, N.A., as accounts bank, Mizuho Corporate Bank, Ltd., as lead 
arranger and co-syndication agent, CIT Capital Securities LLC, as lead arranger and co-
syndication agent, Cooperative Centrale Raiffeisen-Boerenleenbank BA., ―Rabobank 
Nederland‖, New York Branch, and Banco Santander Central Hispano S.A., New York 
Branch (26) 

Sponsor Support Agreement, dated as of February 27, 2007, by and among Pacific Ethanol, 
Inc., Pacific Ethanol Holding Co. LLC and WestLB AG, New York Branch, as administrative 
agent (26) 

Executive Employment Agreement dated December 11, 2007 by and between Pacific Ethanol, 
Inc. and Joseph W. Hansen (#) (27) 

Indemnification Agreement as of January 2, 2008 by and between Pacific Ethanol, Inc. and 
Joseph W. Hansen (#) (27) 

Amended and Restated Executive Employment Agreement dated December 11, 2007 by and 
between Pacific Ethanol, Inc. and Neil M. Koehler (#) (27) 

Amended and Restated Executive Employment Agreement dated December 11, 2007 by and 
between Pacific Ethanol, Inc. and John T. Miller (#) (27) 

Amended and Restated Executive Employment Agreement dated December 11, 2007 by and 
between Pacific Ethanol, Inc. and Christopher W. Wright (#) (27) 

Securities Purchase Agreement dated March 18, 2008 by and between Pacific Ethanol, Inc. 
and Lyles United, LLC (28) 

10.81  Warrant dated March 27, 2008 issued by Pacific Ethanol, Inc. to Lyles United, LLC (29) 

 
 
Exhibit 
Number 

10.82 

10.83 

10.84 

10.85 

10.86 

10.87 

10.88 

Description 

Registration Rights Agreement dated as of March 27, 2008 by and between Pacific Ethanol, 
Inc. and Lyles United, LLC (29) 

Letter Agreement dated March 27, 2008 by and between Pacific Ethanol, Inc. and Lyles 
United, LLC (29) 

Series A Preferred Stockholder Consent and Waiver dated March 27, 2008 by and between 
Pacific Ethanol, Inc. and Cascade Investment, L.L.C. (29) 

Form of Waiver and Third Amendment to Credit Agreement dated as of March 25, 2008 by 
and among Pacific Ethanol, Inc. and the parties thereto (29) 

Forbearance Agreement and Release dated as of May 12, 2008 by and among Kinergy 
Marketing LLC, Pacific Ethanol, Inc. and Comerica Bank (30) 

Reaffirmation of Guaranty dated May 12, 2008 by Pacific Ethanol, Inc. and Neil M. Koehler, 
Bill Jones, Paul P. Koehler and Thomas D. Koehler (30) 

Securities Purchase Agreement dated May 20, 2008 by and among Pacific Ethanol, Inc. and 
Neil M. Koehler, Bill Jones, Paul P. Koehler and Thomas D. Koehler (31) 

10.89 

Form of Warrant dated May 22, 2008 issued by Pacific Ethanol, Inc. (31) 

10.90 

10.91 

Letter Agreement dated May 22, 2008 by and among Pacific Ethanol, Inc. and Neil M. 
Koehler, Bill Jones, Paul P. Koehler and Thomas D. Koehler (31) 

Form of Subscription Agreement dated May 22, 2008 between Pacific Ethanol, Inc. and each 
of the purchasers (31) 

10.92 

Form of Warrant to purchase shares of Pacific Ethanol, Inc. Common Stock (31) 

10.93 

10.94 

10.95 

10.96 

10.97 

10.98 

10.99 

Form of Placement Agent Agreement dated May 22, 2008, by and between Pacific Ethanol, 
Inc. and Lazard Capital Markets LLC (31) 

Loan and Security Agreement dated July 28, 2008 by and among Kinergy Marketing LLC, the 
parties thereto from time to time as Lenders, Wachovia Capital Finance Corporation 
(Western) and Wachovia Bank, National Association (32) 

Guarantee dated July 28, 2008 by and between Pacific Ethanol, Inc. in favor of Wachovia 
Capital Finance Corporation (Western) for and on behalf of Lenders (32) 

Loan Restructuring Agreement dated as of November 7, 2008 by and among Pacific Ethanol, 
Inc., Pacific Ethanol Imperial, LLC, Pacific Ethanol California, Inc. and Lyles United, LLC 
(33) 

Amended and Restated Promissory Note dated November 7, 2008 by Pacific Ethanol, Inc. in 
favor of Lyles United, LLC (33) 

Security Agreement dated as of November 7, 2008 by and between Pacific Ag. Products, LLC 
and Lyles United, LLC (33) 

Limited Recourse Guaranty dated November 7, 2008 by Pacific Ethanol California, Inc. in 
favor of Lyles United, LLC (33) 

10.100  Unconditional Guaranty dated November 7, 2008 by Pacific Ag. Products, LLC in favor of 

Lyles United, LLC (33) 

10.101 

Irrevocable Joint Instruction Letter dated November 7, 2008 executed by Pacific Ethanol, Inc., 
Lyles United, LLC and Pacific Ethanol California, Inc. (33) 

 
 
Exhibit 
Number 

Description 

10.102  Amendment and Forbearance Agreement dated February 13, 2009 by and among Pacific 

Ethanol, Inc., Kinergy Marketing LLC and Wachovia Capital Finance Corporation (Western) 
(34) 

10.103  Limited Waiver and Forbearance Agreement dated as of February 17, 2009 by and among 

Pacific Ethanol Holding Co. LLC, Pacific Ethanol Madera LLC, Pacific Ethanol Columbia, 
LLC, Pacific Ethanol Stockton, LLC, Pacific Ethanol Magic Valley, LLC, WestLB AG, New 
York Branch, Amarillo National Bank and the Lenders identified therein (34) 

10.104  Amendment No. 1 to Letter re: Amendment and Forbearance Agreement dated February 26, 

2009 by and among Pacific Ethanol, Inc., Kinergy Marketing LLC and Wachovia Capital 
Finance Corporation (Western) (35) 

10.105  Second Limited Waiver and Forbearance Agreement dated as of February 27, 2009 by and 

among Pacific Ethanol Holding Co. LLC, Pacific Ethanol Madera LLC, Pacific Ethanol 
Columbia, LLC, Pacific Ethanol Stockton, LLC, Pacific Ethanol Magic Valley, LLC, WestLB 
AG, New York Branch, Amarillo National Bank and the Lenders identified therein (35) 

10.106  Forbearance Agreement dated February 26, 2009 by and among Pacific Ethanol, Inc., Pacific 

Ag Products, LLC, Pacific Ethanol California, Inc. and Lyles United, LLC. (35) 

21.1 

23.1 

31.1 

31.2 

32.1 

Subsidiaries of the Registrant 

Consent of Independent Registered Public Accounting Firm 

Certification Required by Rule 13a-14(a) of the Securities Exchange Act of 1934, as 
amended, as Adopted Pursuant to Section 302 of the Sarbanes-Oxley Act of 2002 

Certification Required by Rule 13a-14(a) of the Securities Exchange Act of 1934, as 
amended, as Adopted Pursuant to Section 302 of the Sarbanes-Oxley Act of 2002 

Certification of Chief Executive Officer and Chief Financial Officer Pursuant to 18 U.S.C. 
Section 1350, as Adopted Pursuant to Section 906 of the Sarbanes-Oxley Act of 2002 

_______________ 
(#) 

(*) 

(1) 

(2) 

(3) 

(4) 

Management contract or compensatory plan, contract or arrangement required to be filed as an 
exhibit. 
Portions of this exhibit have been omitted pursuant to a request for confidential treatment filed 
with the Securities and Exchange Commission. 
Filed as an exhibit to the Registrant’s current report on Form 8-K for March 23, 2005 filed with 
the Securities and Exchange Commission on March 29, 2005 and incorporated herein by 
reference. 
Filed as an exhibit to the Registrant’s quarterly report on Form 10-QSB for March 31, 2005 (File 
No. 0-21467) filed with the Securities and Exchange Commission on May 23, 2005 and 
incorporated herein by reference. 
Filed as an exhibit to the Registrant’s Registration Statement on Form S-8 (Reg. No. 333-123538) 
filed with the Securities and Exchange Commission on March 24, 2005 and incorporated herein 
by reference. 
Filed as an exhibit to the Registrant’s annual report Form 10-KSB for December 31, 2002 (File 
No. 0-21467) filed with the Securities and Exchange Commission on March 31, 2003 and 
incorporated herein by reference. 

 
 
(5) 

(6) 

(7) 

(8) 

(9) 

(10) 

(11) 

(12) 

(13) 

(14) 

(15) 

(16) 

(17) 

(18) 

(19) 

(20) 

(21) 

(22) 

(23) 

(24) 

Filed as an exhibit to the Registrant’s current report on Form 8-K for August 10, 2005 filed with 
the Securities and Exchange Commission on August 16, 2005 and incorporated herein by 
reference. 
The Form of the Registration Rights Agreement was filed as Exhibit 4.4 to the Registrant’s 
Registration Statement on Form S-1 (Reg. No. 333-127714) filed with the Securities and 
Exchange Commission on August 19, 2005 and incorporated herein by reference. 
Filed as an exhibit to the Registrant’s Registration Statement on Form S-1 (Reg. No. 333-127714) 
filed with the Securities and Exchange Commission on August 19, 2005 and incorporated herein 
by reference. 
Filed as an exhibit to the Registrant’s current report on Form 8-K for August 31, 2005 filed with 
the Securities and Exchange Commission on September 7, 2005 and incorporated herein by 
reference. 
Filed as an exhibit to the Registrant’s current report on Form 8-K for November 1, 2005 filed 
with the Securities and Exchange Commission on November 7, 2005 and incorporated herein by 
reference. 
Filed as an exhibit to the Registrant’s current report on Form 8-K for November 2, 2005 filed 
with the Securities and Exchange Commission on November 8, 2005 and incorporated herein by 
reference. 
Filed as an exhibit to the Registrant’s current report on Form 8-K for November 10, 2005 filed 
with the Securities and Exchange Commission on November 15, 2005 and incorporated herein by 
reference. 
Filed as an exhibit to the Registrant’s Amendment No. 2 to Registration Statement on Form S-1 
(Reg. No. 333-127714) filed with the Securities and Exchange Commission on November 22, 
2005 and incorporated herein by reference. 
Filed as an exhibit to the Registrant’s current report on Form 8-K for January 26, 2006 filed with 
the Securities and Exchange Commission on February 1, 2006 and incorporated herein by 
reference. 
Filed as an exhibit to the Registrant’s annual report on Form 10-KSB for December 31, 2005 
filed with the Securities and Exchange Commission on April 14, 2006 and incorporated herein by 
reference. 
Filed as an exhibit to the Registrant’s current report on Form 8-K for April 13, 2006 filed with the 
Securities and Exchange Commission on April 19, 2006 and incorporated herein by reference. 
Filed as an exhibit to the Registrant’s current report on Form 8-K for May 25, 2006 filed with the 
Securities and Exchange Commission on May 31, 2006 and incorporated herein by reference. 
Filed as an exhibit to the Registrant’s Current Report on Form 8-K for June 26, 2006 filed with 
the Securities and Exchange Commission on June 27, 2006. 
Filed as an exhibit to the Registrant’s Current Report on Form 8-K for August 9, 2006 filed with 
the Securities and Exchange Commission on August 15, 2006. 
Filed as an exhibit to the Registrant’s Current Report on Form 8-K for August 23, 2006 filed with 
the Securities and Exchange Commission on August 29, 2006. 
Filed as an exhibit to the Registrant’s Registration Statement on Form S-8 (Reg. No. 333-137663) 
filed with the Securities and Exchange Commission on September 29, 2006. 
Filed as an exhibit to the Registrant’s quarterly report on Form 10-Q for September 30, 2006 filed 
with the Securities and Exchange Commission on November 20, 2006 and incorporated herein by 
reference. 
Filed as an exhibit to the Registrant’s Current Report on Form 8-K for October 4, 2006 filed with 
the Securities and Exchange Commission on October 10, 2006. 
Filed as an exhibit to the Registrant’s Current Report on Form 8-K for October 2, 2006 filed with 
the Securities and Exchange Commission on October 12, 2006. 
Filed as an exhibit to the Registrant’s Current Report on Form 8-K for October 17, 2006 filed 
with the Securities and Exchange Commission on October 23, 2006. 

 
 
(25) 

(26) 

(27) 

(28) 

(29) 

(30) 

(31) 

(32) 

(33) 

(34) 

(35) 

Filed as an exhibit to the Registrant’s Current Report on Form 8-K for December 14, 2006 filed 
with the Securities and Exchange Commission on December 15, 2006. 
Filed as an exhibit to the Registrant’s Current Report on Form 8-K for February 27, 2007 filed 
with the Securities and Exchange Commission on March 5, 2007. 
Filed as an exhibit to the Registrant’s Current Report on Form 8-K for December 11, 2007 filed 
with the Securities and Exchange Commission on December 17, 2007. 
Filed as an exhibit to the Registrant’s Current Report on Form 8-K for March 18, 2008 filed with 
the Securities and Exchange Commission on March 18, 2008. 
Filed as an exhibit to the Registrant’s Current Report on Form 8-K for March 26, 2008 filed with 
the Securities and Exchange Commission on March 27, 2008. 
Filed as an exhibit to the Registrant’s Current Report on Form 8-K for May 13, 2008 filed with 
the Securities and Exchange Commission on May 19, 2008. 
Filed as an exhibit to the Registrant’s Current Report on Form 8-K for May 22, 2008 filed with 
the Securities and Exchange Commission on May 23, 2008. 
Filed as an exhibit to the Registrant’s Current Report on Form 8-K for July 28, 2008 filed with 
the Securities and Exchange Commission on August 1, 2008. 
Filed as an exhibit to the Registrant’s Current Report on Form 8-K for November 7, 2008 filed 
with the Securities and Exchange Commission on November 10, 2008. 
Filed as an exhibit to the Registrant’s Current Report on Form 8-K for February 13, 2009 filed 
with the Securities and Exchange Commission on February 20, 2009. 
Filed as an exhibit to the Registrant’s Current Report on Form 8-K for February 26, 2009 filed 
with the Securities and Exchange Commission on March 4, 2009. 

 
 
 
 
SIGNATURES 

Pursuant to the requirements of Section 13 or 15(d) of the Securities Exchange Act of 1934, the 

registrant has duly caused this report to be signed on its behalf by the undersigned, thereunto duly 
authorized on this 31st day of March, 2009. 

PACIFIC ETHANOL, INC. 

/s/ NEIL M. KOEHLER 

Neil M. Koehler 
President and Chief Executive Officer 

Pursuant to the requirements of the Securities Exchange Act of 1934, this report has been signed 

below by the following persons on behalf of the Registrant and in the capacities and on the dates 
indicated. 

Signature 

Title 

Date 

/s/ WILLIAM L. JONES 
William L. Jones 

/s/ NEIL M. KOEHLER 
Neil M. Koehler 

Chairman of the Board and Director 

March 31, 2009 

President, Chief Executive Officer 
(Principal Executive Officer) and Director 

March 31, 2009 

/s/ JOSEPH W. HANSEN 
Joseph W. Hansen 

Chief Financial Officer (Principal 
Financial and Accounting Officer) 

March 31, 2009 

/s/ TERRY L. STONE 
Terry L. Stone 

/s/ JOHN L. PRINCE 
John L. Prince 

/s/ DOUGLAS L. KIETA 
Douglas L. Kieta 

/s/ LARRY D. LAYNE 
Larry D. Layne 

/s/ MICHAEL D. KANDRIS 
Michael D. Kandris 

Director 

Director 

Director 

Director 

Director 

March 31, 2009 

March 31, 2009 

March 31, 2009 

March 31, 2009 

March 31, 2009 

 
 
 
 
 
 
 
EXHIBITS FILED WITH THIS REPORT 

Exhibit 
Number  Description 

21.1 

23.1 

31.1 

31.2 

32.1 

Subsidiaries of the Registrant 

Consent of Independent Registered Public Accounting Firm 

Certification Required by Rule 13a-14(a) of the Securities Exchange Act of 1934, as 
amended, as Adopted Pursuant to Section 302 of the Sarbanes-Oxley Act of 2002 

Certification Required by Rule 13a-14(a) of the Securities Exchange Act of 1934, as 
amended, as Adopted Pursuant to Section 302 of the Sarbanes-Oxley Act of 2002 

Certification of Chief Executive Officer and Chief Financial Officer Pursuant to 18 U.S.C. 
Section 1350, as Adopted Pursuant to Section 906 of the Sarbanes-Oxley Act of 2002 

 
 
 
 
 
 
EXHIBIT 21.1 

Subsidiary Name 

SUBSIDIARIES OF THE REGISTRANT 

Names Under Which 
Subsidiary Does Business 

State or Jurisdiction of 
Incorporation or 
Organization 

Pacific Ethanol California, Inc. 

Pacific Ethanol California 

Kinergy Marketing, LLC 

Kinergy Marketing/Kinergy 

Pacific Ag. Products, LLC  

Pacific Ag Products/PAP 

Pacific Ethanol Madera LLC 

Pacific Ethanol Madera 

Pacific Ethanol Holding Co. LLC 

Pacific Ethanol Holding Co. 

Pacific Ethanol Imperial, LLC 

Pacific Ethanol Imperial 

Pacific Ethanol Stockton LLC 

Pacific Ethanol Stockton 

Pacific Ethanol Columbia, LLC 

Pacific Ethanol Columbia 

Pacific Ethanol Magic Valley, LLC 

Pacific Ethanol Magic Valley 

Pacific Ethanol Plymouth, LLC 

Pacific Ethanol Plymouth 

Pacific BioGasol, LLC 

Pacific BioGasol 

Stockton Ethanol Receiving Company, LLC 

Stockton Ethanol Receiving 
Company 

California 

Oregon 

California 

Delaware 

Delaware 

Delaware 

Delaware 

Delaware 

Delaware 

Delaware 

Oregon 

Delaware 

 
 
 
 
 
 
EXHIBIT 23.1 

Consent of Independent Registered Public Accounting Firm 

To the Board of Directors 
Pacific Ethanol, Inc. 
Sacramento, California 

We consent to the incorporation by reference in Registration Statements (Nos. 333-106554, 333-123538 
and 333-137663) on Form S-8 and (Nos. 333-127714, 333-135270, 333-138260, 333-143617 and 333-
147471) on Form S-3 of Pacific Ethanol, Inc. of our reports dated March 31, 2009 relating to our audits of 
the consolidated financial statements and internal control over financial reporting, which appear in this 
Annual Report on Form 10-K of Pacific Ethanol, Inc. for the year ended December 31, 2008. 

/s/ HEIN & ASSOCIATES LLP 

Irvine, California 
March 31, 2009 

 
 
 
 
EXHIBIT 31.1 

I, Neil M. Koehler, certify that: 

CERTIFICATION 

1. I have reviewed this Annual Report on Form 10-K of Pacific Ethanol, Inc.; 

2. Based on my knowledge, this report does not contain any untrue statement of a material fact or omit to state 
a  material fact necessary to make the statements made, in light of the circumstances under which such statements 
were made, not misleading with respect to the period covered by this report; 

3. Based on my knowledge, the financial statements, and other financial information included in this report, 
fairly present in all material respects the financial condition, results of operations and cash flows of the registrant as 
of, and for, the periods presented in this report; 

4. The registrant’s other certifying officers and I are responsible for establishing and maintaining disclosure 
controls  and  procedures  (as  defined  in  Exchange  Act  Rules  13a-15(e)  and  15d-15(e))  and  internal  control  over 
financial reporting (as defined in Exchange Act Rules 13a-15(f) and 15d-15(f)) for the registrant and have: 

(a) Designed such disclosure controls and procedures, or caused such disclosure controls and procedures 
to  be  designed  under  our  supervision,  to  ensure  that  material  information  relating  to  the  registrant,  including  its 
consolidated  subsidiaries,  is  made  known  to  us  by  others  within  those  entities,  particularly  during  the  period  in 
which this report is being prepared; 

(b) Designed such internal control over financial reporting, or caused such internal control over financial 
reporting to be designed under our supervision, to provide reasonable assurance regarding the reliability of financial 
reporting  and  the  preparation  of  financial  statements  for  external  purposes  in  accordance  with  generally  accepted 
accounting principles; 

(c)  Evaluated  the  effectiveness  of  the  registrant’s  disclosure  controls  and  procedures  and  presented  in 
this  report  our  conclusions  about  the  effectiveness  of  the  disclosure  controls  and  procedures,  as  of  the  end  of  the 
period covered by this report based on such evaluation; and 

(d) Disclosed in this report any change in the registrant’s internal control over financial reporting that 
occurred  during  the  registrant’s  most  recent  fiscal  quarter  (the  registrant’s  fourth  fiscal  quarter  in  the  case  of  an 
annual  report)  that  has  materially  affected,  or  is  reasonably  likely  to  materially  affect,  the  registrant’s  internal 
control over financial reporting. 

5.  The  registrant’s  other  certifying  officer(s)  and  I  have  disclosed,  based  on  our  most  recent  evaluation  of 
internal control over financial reporting, to the registrant’s auditors and the audit committee of the registrant’s board 
of directors (or persons performing the equivalent functions): 

(a)  All  significant  deficiencies  and  material  weaknesses  in  the  design  or  operation  of  internal  control 
over  financial  reporting  which  are  reasonably  likely  to  adversely  affect  the  registrant’s  ability  to  record,  process, 
summarize and report financial information; and 

(b)  Any  fraud,  whether  or  not  material,  that  involves  management  or  other  employees  who  have  a 

significant role in the registrant’s internal control over financial reporting. 

Date: March 31, 2009 

/s/ NEIL M. KOEHLER 

Neil M. Koehler 
President and Chief Executive Officer (Principal 

Executive Officer) 

 
 
 
EXHIBIT 31.2 

I, Joseph W. Hansen, certify that: 

CERTIFICATION 

1. I have reviewed this Annual Report on Form 10-K of Pacific Ethanol, Inc.; 

2. Based on my knowledge, this report does not contain any untrue statement of a material fact or omit to state 
a  material fact necessary to make the statements made, in light of the circumstances under which such statements 
were made, not misleading with respect to the period covered by this report; 

3. Based on my knowledge, the financial statements, and other financial information included in this report, 
fairly present in all material respects the financial condition, results of operations and cash flows of the registrant as 
of, and for, the periods presented in this report; 

4. The registrant’s other certifying officers and I are responsible for establishing and maintaining disclosure 
controls  and  procedures  (as  defined  in  Exchange  Act  Rules  13a-15(e)  and  15d-15(e))  and  internal  control  over 
financial reporting (as defined in Exchange Act Rules 13a-15(f) and 15d-15(f)) for the registrant and have: 

(a) Designed such disclosure controls and procedures, or caused such disclosure controls and procedures 
to  be  designed  under  our  supervision,  to  ensure  that  material  information  relating  to  the  registrant,  including  its 
consolidated  subsidiaries,  is  made  known  to  us  by  others  within  those  entities,  particularly  during  the  period  in 
which this report is being prepared; 

(b) Designed such internal control over financial reporting, or caused such internal control over financial 
reporting to be designed under our supervision, to provide reasonable assurance regarding the reliability of financial 
reporting  and  the  preparation  of  financial  statements  for  external  purposes  in  accordance  with  generally  accepted 
accounting principles; 

(c)  Evaluated  the  effectiveness  of  the  registrant’s  disclosure  controls  and  procedures  and  presented  in 
this  report  our  conclusions  about  the  effectiveness  of  the  disclosure  controls  and  procedures,  as  of  the  end  of  the 
period covered by this report based on such evaluation; and 

(d) Disclosed in this report any change in the registrant’s internal control over financial reporting that 
occurred  during  the  registrant’s  most  recent  fiscal  quarter  (the  registrant’s  fourth  fiscal  quarter  in  the  case  of  an 
annual  report)  that  has  materially  affected,  or  is  reasonably  likely  to  materially  affect,  the  registrant’s  internal 
control over financial reporting. 

5.  The  registrant’s  other  certifying  officer(s)  and  I  have  disclosed,  based  on  our  most  recent  evaluation  of 
internal control over financial reporting, to the registrant’s auditors and the audit committee of the registrant’s board 
of directors (or persons performing the equivalent functions): 

(a)  All  significant  deficiencies  and  material  weaknesses  in  the  design  or  operation  of  internal  control 
over  financial  reporting  which  are  reasonably  likely  to  adversely  affect  the  registrant’s  ability  to  record,  process, 
summarize and report financial information; and 

(b)  Any  fraud,  whether  or  not  material,  that  involves  management  or  other  employees  who  have  a 

significant role in the registrant’s internal control over financial reporting. 

Date: March 31, 2009 

/s/ JOSEPH W. HANSEN 

Joseph W. Hansen 
Chief Financial Officer (Principal Financial and 

Accounting Officer) 

 
 
EXHIBIT 32.1 

CERTIFICATIONS OF CHIEF EXECUTIVE OFFICER AND CHIEF FINANCIAL OFFICER  
PURSUANT TO 18 U.S.C. SECTION 1350,  
AS ADOPTED PURSUANT TO 
SECTION 906 OF THE SARBANES-OXLEY ACT OF 2002 

In connection  with the  Annual Report on  Form 10-K of Pacific Ethanol,  Inc. (the  ―Company‖)  for the  year 
ended  December  31,  2008  (the  ―Report‖),  the  undersigned  hereby  certify  in  their  capacities  as  Chief  Executive 
Officer and Chief Financial Officer of the Company, respectively, pursuant to 18 U.S.C. section 1350, as adopted 
pursuant to Section 906 of the Sarbanes-Oxley Act of 2002, that, to their knowledge: 

1.  the Report fully complies with the requirements of Section 13(a) or 15(d) of the Securities Exchange Act of 

1934, as amended; and 

2.  the information contained in the Report fairly presents, in all material respects, the financial condition and 

results of operations of the Company. 

Date:  March 31, 2009 

By:  /s/ NEIL M. KOEHLER 
   Neil M. Koehler 

Chief Executive Officer 
(Principal Executive Officer) 

Date:  March 31, 2009 

By:  /s/ JOSEPH W. HANSEN 

Joseph W. Hansen 
Chief Financial Officer (Principal Financial and 

Accounting Officer) 

A  signed  original  of  this  written  statement  required  by  Section  906,  or  other  document  authenticating, 
acknowledging, or otherwise adopting the signatures that appear in typed form within the electronic version of this 
written statement required by Section 906, has been provided to the Company and will be retained by the Company 
and furnished to the Securities and Exchange Commission or its staff upon request.