Quarterlytics / Healthcare / Biotechnology / Soligenix, Inc.

Soligenix, Inc.

sngx · NASDAQ Healthcare
Claim this profile
Ticker sngx
Exchange NASDAQ
Sector Healthcare
Industry Biotechnology
Employees 11-50
← All annual reports
FY2012 Annual Report · Soligenix, Inc.
Sign in to download
Loading PDF…
UNITED STATES SECURITIES AND EXCHANGE COMMISSION
Washington, D.C. 20549

FORM 10-K

(Mark One)
x

ANNUAL REPORT UNDER SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934.

For the Fiscal Year Ended December 31, 2012

o

TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934.

For the transition period from ____________  to  ____________

Commission File No. 000-16929

SOLIGENIX, INC.
(Exact name of registrant as specified in its charter)

Delaware
(State or other jurisdiction of
 incorporation or organization)
29 EMMONS DRIVE, SUITE C-10
PRINCETON, NJ
(Address of principal executive offices)

41-1505029
(I.R.S. Employer
Identification Number)

08540
(Zip Code)

(609) 538-8200
(Registrant’s telephone number, including
area code)

Securities registered under Section 12 (b) of the Exchange Act:

Title of Each Class
 Common Stock, par value $.001 per share

Name of Each Exchange on Which Registered
OTCXB

Securities registered under Section 12(g) of the Exchange Act: None

Indicate  by  check  mark  if  the  registrant  is  a  well-known  seasoned  issuer,  as  defined  in  Rule  405  of  the  Securities

Act.   Yes o     No ☑

Indicate  by  check  mark  if  the  registrant  is  not  required  to  file  reports  pursuant  to  Section  13  or  Section  15(d)  of  the

Act.   Yes o     No ☑

Indicate  by  check  mark  whether  the  registrant  (1)  has  filed  all  reports  required  to  be  filed  by  Section  13  or  15(d)  of  the
Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file
such reports), and (2) has been subject to such filing requirements for the past 90 days. Yes ☑     No o

Indicate by check mark whether the registrant has submitted electronically and posted on its corporate Website, if any, every
Interactive Data File required to be submitted and posted pursuant to Rule 405 of Regulation S-T (§232.405 of this chapter) during
the preceding 12 months (or for such shorter period that the registrant was required to submit and post such files).   Yes ☑   No o

Indicate by check mark if disclosure of delinquent filers pursuant to Item 405 of Regulation S-K is not contained herein, and
will not be contained, to the best of registrant’s knowledge, in definitive proxy or information statements incorporated by reference
in Part III of this 10-K or any amendments to this Form 10-K. ☑

Indicate  by  check  mark  whether  the  registrant  is  a  large  accelerated  filer,  an  accelerated  filer,  a  non-accelerated  filer,  or  a
smaller reporting company. See the definition of “large accelerated filer”, “accelerated filer” and “smaller reporting company” in
Rule 12b-2 of the Exchange Act. (Check one):

Large accelerated filer o

Accelerated filer o

Non-accelerated filer o

Smaller reporting company ☑

Indicate  by  check  mark  whether  the  registrant  is  a  shell  company  (as  defined  in  Rule  12b-2  of  the  Exchange  Act).     

Yes o     No ☑

The aggregate market value of the common stock held by non-affiliates of the registrant was approximately $14,840,800 (assuming, for this purpose,
that executive officers, directors and holders of 10% or more of the common stock are affiliates), based on the closing price of the registrant’s common stock
as reported on the Over-the-Counter Bulletin Board on February 22, 2013.

As of February 22, 2013, 11,179,968 shares of the registrant’s Common Stock, par value $0.001 per share, were outstanding.

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
                                                                                                                                                              
 
 
 
 
 
 
 
 
DOCUMENTS INCORPORATED BY REFERENCE:  None.

 
 
 
SOLIGENIX, INC.

ANNUAL REPORT ON FORM 10-K
For the Year Ended December 31, 2012

Table of Contents

Description
Part I

Part II

  Business
  Risk Factors
  Unresolved Staff Comments
  Properties
  Legal Proceedings

Item  

1.
1A.
1B.
2.
3.

5.
6.
7.
8.
9.
9A.
9B.

10.
11.
12.
13.
14.

  Market for Registrant’s Common Equity, Related Stockholder Matters and Issuer Purchases of Equity Securities
  Selected Financial Data
  Management’s Discussion and Analysis of Financial Condition and Results of Operations
  Financial Statements and Supplementary Data
  Changes in and Disagreements with Accountants on Accounting and Financial Disclosure
  Controls and Procedures
  Other Information

  Directors, Executive Officers and Corporate Governance
  Executive Compensation
  Security Ownership of Certain Beneficial Owners and Management and Related Stockholder Matters
  Certain Relationships and Related Transactions and Director Independence
  Principal Accountant Fees and Services

Part III

Part IV

  Exhibits and Financial Statement Schedules

15.
Signatures
Consolidated Financial Statements

  Page

3
19
27
27
27

28
28
28
34
34
34
35

36
40
44
45
46

47
50
  F-1

 
 
 
 
 
   
 
 
 
 
 
 
 
   
 
 
 
 
 
 
 
 
 
   
 
 
 
 
 
 
 
   
 
 
 
 
 
Item 1. Business

PART I

This  Annual  Report  on  Form  10-K  contains  statements  of  a  forward-looking  nature  relating  to  future  events  or  our  future  financial  performance.  These
statements are only predictions and actual events or results may differ materially. In evaluating such statements, you should carefully consider the various
factors identified in this report that could cause actual results to differ materially from those indicated in any forward-looking statements, including those set
forth in “Risk Factors” in this Annual Report on Form 10-K. See “Cautionary Note Regarding Forward Looking Statements.”

Our Business Overview

Soligenix, Inc. was incorporated in Delaware in 1987. We are a development stage biopharmaceutical company that is focused on developing products to treat
serious  inflammatory  diseases  and  biodefense  countermeasures where  there  remains  an  unmet  medical  need.  We  maintain  two  active  business  segments:
BioTherapeutics and Vaccines/BioDefense.

Our  BioTherapeutics  business  segment 
the
prevention/treatment of gastrointestinal (“GI”) disorders characterized by severe inflammation, including pediatric Crohn’s disease (SGX203), acute radiation
enteritis (SGX201) and chronic Graft-versus-Host disease (orBec®), as well as developing our novel innate defense regulator (“IDR”) technology (SGX942)
for the treatment of oral mucositis.

is  developing  proprietary  formulations  of  oral  beclomethasone  17,21-dipropionate  (“BDP”)  for 

Our Vaccines/BioDefense business segment includes active development programs for RiVaxTM, our ricin toxin vaccine, VeloThrax™, our anthrax vaccine,
and OrbeShield™, our gastrointestinal acute radiation syndrome (“GI ARS”) therapeutic. The advanced development of our vaccine programs is currently
supported by our heat stabilization technology, known as ThermoVax™, under existing and on-going government grant funding.

An outline for our business strategy follows:

● Initiate a Phase 1/2 clinical trial of oral BDP, known as SGX203 for the treatment of pediatric Crohn’s disease;
● Initiate a Phase 2 clinical trial of SGX942 for the treatment of oral mucositis in head and neck cancer;
● Evaluate  the  effectiveness  of  oral  BDP  in  other  therapeutic  indications  involving  inflammatory  conditions  of  the  GI  tract  such  as  prevention  of  acute

radiation enteritis, prevention of acute radiation syndrome, and treatment of chronic graft-versus-host disease (“GVHD”);

● Develop RiVax™ and VeloThrax™ in combination with our proprietary vaccine heat stabilization technology, known as ThermoVax™, to develop new

heat stable vaccines in biodefense and infectious diseases with the potential to collaborate and/or partner with other companies in these areas;

● Continue  to  apply  for  and  secure  additional  government  funding  for  each  of  our  BioTherapeutics  and  Vaccines/BioDefense  programs  through  grants,

contracts and/or procurements; and

● Explore other business development and merger/acquisition strategies.

Our principal executive offices are located at 29 Emmons Drive, Suite C-10, Princeton, New Jersey 08540 and our telephone number is (609) 538-8200.

3

 
 
 
 
 
Our Products in Development

The following tables summarize the products that we are currently developing:

BioTherapeutic Products

Soligenix Product
SGX942
SGX203

SGX201

orBec®

Therapeutic Indication
Oral Mucositis in Head and Neck Cancer
Pediatric Crohn’s disease

Acute Radiation Enteritis

Treatment of Chronic GI GVHD

Stage of Development
IND clearance and Phase 2 trial planned
Phase 1/2 clinical trial planned
Phase 1/2 clinical trial complete;
safety and preliminary efficacy demonstrated
Phase 2 trial planned

Vaccine Thermostability Platform

Soligenix Product
ThermoVax™

Indication
Thermostability of aluminum adjuvanted vaccines

Stage of Development
Pre-clinical

BioDefense Products

Soligenix Product

RiVax™

Indication
Vaccine against
Ricin Toxin Poisoning

Stage of Development
Phase 1B trial complete;
safety and neutralizing antibodies for protection demonstrated

VeloThrax™

Vaccine against Anthrax Poisoning

Pre-clinical

OrbeShield™

Therapeutic against GI ARS

Follow-on pre-clinical study initiated;
Initial pre-clinical study complete;
successful protection in canines

BioTherapeutics Overview

SGX94

In December 2012, we acquired a novel drug technology, we refer to as SGX94, representing a unique approach to modulation of the innate immune system.
SGX94 is an IDR that regulates the innate immune system to simultaneously reduce inflammation, eliminate infection and enhance tissue healing. As part of
the acquisition, we acquired all rights, including composition of matter patents, preclinical and Phase 1 clinical study datasets for SGX94. We also assumed a
license  agreement  with  the  University  of  British  Columbia  (“UBC”)  to  advance  the  research  and  development  of  the  SGX94  technology.  The  license
agreement  with  UBC  provides  us  with  exclusive  worldwide  rights  to  manufacture,  distribute,  market  sell  and/or  license  or  sublicense  products  derived  or
developed from this technology.

SGX94 is the research name for the active ingredient in SGX942, which is the research name for the finished drug product being studied in oral mucositis. It
is  a  new  class  of  short,  synthetic  peptides  known  as  IDRs  that  have  a  novel  mechanism  of  action  in  that  it  is  simultaneously  anti-inflammatory  and  anti-
infective.  IDRs  have  no  direct  antibiotic  activity  but  modulate  host  responses,  increasing  survival  after  infections  with  a  broad  range  of  bacterial  Gram-
negative and Gram-positive pathogens including both antibiotic sensitive and resistant strains, as well as accelerating resolution of tissue damage following
exposure  to  a  variety  of  agents  including  bacterial  pathogens,  trauma  and  chemo-  or  radiation-therapy.  IDRs  provide  a  novel  approach  to  the  control  of
infection and tissue damage via highly selective binding to an intracellular adaptor protein, sequestosome-1, also known as p62, which has a pivotal function
in signal transduction during activation and control of the innate defense system. Preclinical data indicate that IDRs are active in models of a wide range of
therapeutic indications including life-threatening bacterial infections as well as the severe side-effects of chemo- and radiation-therapy.

4

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
We have a strong worldwide IP position on SGX94 and related analogs including composition of matter. SGX94 was developed pursuant to discoveries made
by Professors B. Brett Finlay and Robert Hancock of the University of British Columbia, Canada and approximately $40 million has been invested towards
its development to date, inclusive of government grants.

SGX94 has been evaluated in a double-blind, placebo-controlled Phase 1 clinical trial in 84 healthy volunteers with both single ascending dose and multiple
ascending dose components. SGX94 showed a strong safety profile when administered by IV over 7 days and was consistent with safety results seen in pre-
clinical studies. SGX94 is the subject of an open Investigational New Drug (“IND”) application which has been cleared by the United States Food and Drug
Administration (“FDA”). Market opportunities include, but are not limited to, mucositis and bacterial infections.

SGX942 – for Treating Oral Mucositis in Head and Neck Cancer

SGX942 is poised to start a Phase 2 clinical study in oral mucositis in head and neck cancer patients. Oral mucositis in this patient population is an area of
unmet medical need where there are currently no approved drug therapies.

About Oral Mucositis

Mucositis is the clinical term for damage done to the mucosa by anticancer therapies. It can occur in any mucosal region, but is most commonly associated
with the mouth, followed by the small intestine. Mucositis affects approximately 500,000 people in the United States (“U.S.”) per year and occurs in 40% of
patients receiving chemotherapy. Mucositis almost always occurs in patients with head and neck cancer treated with radiation therapy (>80% incidence of
severe  mucositis)  and  is  common  (40-100%  incidence)  in  patients  undergoing  high  dose  chemotherapy  and  hematopoietic  cell  transplantation,  where  the
incidence and severity of mucositis depends greatly on the nature of the conditioning regimen used for myeloablation. Mucositis can be severely debilitating
and  can  lead  to  infection,  sepsis,  the  need  for  parenteral  nutrition  and  narcotic  analgesia.  The  gastro-intestinal  damage  causes  severe  diarrhea.  These
symptoms can limit the doses and duration of cancer treatment, leading to sub-optimal treatment outcomes.

The mechanisms of mucositis have been extensively studied and have been recently linked to the interaction of chemotherapy and/or radiation therapy with
the  innate  defense  system.  Bacterial  infection  of  the  ulcerative  lesions  is  now  regarded  as  a  secondary  consequence  of  dysregulated  local  inflammation
triggered by therapy-induced cell death, rather than as the primary cause of the lesions.

Oral BDP

Oral BDP (beclomethasone 17,21-dipropionate) represents a first-of-its-kind oral, locally acting therapy tailored to treat gastrointestinal inflammation.  BDP
has been marketed in the U.S. and worldwide since the early 1970s as the active pharmaceutical ingredient in a nasal spray and in a metered-dose inhaler for
the treatment of patients with allergic rhinitis and asthma. Oral BDP is specifically formulated for oral administration as a single product consisting of two
tablets. One tablet is intended to release BDP in the upper sections of the GI tract and the other tablet is intended to release BDP in the lower sections of the
GI tract.

5

 
 
 
 
 
Based  on  its  pharmacological  characteristics,  oral  BDP may  have  utility  in  treating  other  conditions  of  the  gastrointestinal  tract  having  an  inflammatory
component. We have an issued U.S. patent 8,263,582 claiming the use of oral BDP as a method of treating inflammatory disorders of the gastrointestinal
tract, including Crohn’s disease, and an issued U.S. patent 6,096,731 claiming the use of oral BDP as a method for preventing and treating the tissue damage
that  is  associated  with  both  GI  GVHD  following  hematopoietic  cell  transplantation,  as  well  as  GVHD  which  also  occurs  following  organ  allograft
transplantation. We also have European Patent EP 1392321 claiming the use of topically active corticosteroids in orally administered dosage forms that act
concurrently to treat inflammation in the upper and lower gastrointestinal tract. We are planning to pursue development programs in the treatment of pediatric
Crohn’s disease, acute radiation enteritis, chronic GI GVHD and GI ARS pending further grant funding. We are also exploring the possibility of testing oral
BDP for local inflammation associated with Ulcerative Colitis, among other indications. We believe the potential worldwide market for oral BDP is in excess
of $500 million for all GI applications, namely, pediatric Crohn’s disease, radiation enteritis, GI ARS, and chronic GI GVHD.

In  addition  to  issued  patents  and  pending  worldwide  patent  applications  held  by  or  exclusively  licensed  to  us,  oral  BDP  would  benefit  from  orphan  drug
designations in the U.S. and in Europe. Orphan drug designations provide for 7 and 10 years of market exclusivity upon approval in the U.S. and Europe,
respectively.

SGX203 –for Treating Pediatric Crohn’s Disease

SGX203  is  a  two  tablet  delivery  system  of  BDP  specifically  designed  for  oral  use  that  allows  for  administration  of  immediate  and  delayed  release  BDP
throughout the small bowel and the colon. The FDA has awarded SGX203 Orphan Drug designation for the treatment of pediatric Crohn's disease as well as
Fast  Track  designation.  Fast  Track  is  a  designation  that  the  FDA  reserves  for  a  drug  intended  to  treat  a  serious  or  life-threatening  condition  and  one  that
demonstrates the potential to address an unmet medical need for the condition. Fast track designation is designed to facilitate the development and expedite
the review of new drugs. For instance, should events warrant, we will be eligible to submit a New Drug Application (“NDA”) for SGX203 on a rolling basis,
permitting the FDA to review sections of the NDA prior to receiving the complete submission. Additionally, NDAs for Fast Track development programs
ordinarily will be eligible for priority review, which implies an abbreviated review time of six months.

We plan to initiate a Phase 1/2 pharmacokinetic clinical trial in pediatric Crohn’s disease in 2013.

About Pediatric Crohn's Disease

Crohn's disease is an ongoing disorder that causes inflammation of the GI tract. Crohn's disease can affect any area of the GI tract, from the mouth to the
anus, but it most commonly affects the lower part of the small intestine, called the ileum. The swelling caused by the disease extends deep into the lining of
the  affected  organ.  The  swelling  can  induce  pain  and  can  make  the  intestines  empty  frequently,  resulting  in  diarrhea.  Because  the  symptoms  of  Crohn's
disease are similar to other intestinal disorders, such as irritable bowel syndrome and ulcerative colitis, it can be difficult to diagnose. People of Ashkenazi
Jewish heritage have an increased risk of developing Crohn's disease.

Crohn's disease can appear at any age, but it is most often diagnosed in adults in their 20s and 30s. However, approximately 30% of people with Crohn's
disease develop symptoms before 20 years of age. Pediatric Crohn's disease is a subpopulation of approximately 80,000 patients in the U.S.. Crohn’s disease
tends to be both severe and extensive in the pediatric population and a relatively high proportion (~40%) of pediatric Crohn’s patients have involvement of
their upper gastrointestinal tract.

Crohn's disease presents special challenges for children and teens. In addition to bothersome and often painful symptoms, the disease can stunt growth, delay
puberty,  and  weaken  bones.  Crohn's  disease  symptoms  may  sometimes  prevent  a  child  from  participating  in  enjoyable  activities.  The  emotional  and
psychological issues of living with a chronic disease can be especially difficult for young people.

6

 
 
 
SGX201 –for Preventing Acute Radiation Enteritis

SGX201 is a delayed-release formulation of BDP specifically designed for oral use. We completed a Phase 1/2 clinical trial testing SGX201 in prevention of
acute radiation enteritis. Patients with rectal cancer scheduled to undergo concurrent radiation and chemotherapy prior to surgery were randomized to one of
four  dose  groups.  The  objectives  of  the  study  were  to  evaluate  the  safety  and  maximal  tolerated  dose  of  escalating  doses  of  SGX201,  as  well  as  the
preliminary  efficacy  of  SGX201  for  prevention  of  signs  and  symptoms  of  acute  radiation  enteritis.  The  study  demonstrated  that  oral  administration  of
SGX201 was safe and well tolerated across all four dose groups. There was also evidence of a potential dose response with respect to diarrhea, nausea and
vomiting  and  the  assessment  of  enteritis  according  to  National  Cancer  Institute  (“NCI”)  Common  Terminology  Criteria  for  Adverse  Events  for  selected
gastrointestinal events. In addition, the incidence of diarrhea was lower than that seen in recent published historical control data in this patient population.
This program was supported in part by a $500,000 two-year Small Business Innovation and Research (“SBIR”) grant awarded by the National Institutes of
Health (“NIH”). We are currently working with our Radiation Enteritis medical advisory board to determine potential next steps forward with the clinical
development program.

We have received Fast Track designation from the FDA for SGX201 for acute radiation enteritis.

About Acute Radiation Enteritis

External radiation therapy is used to treat most types of cancer, including cancer of the bladder, uterine, cervix, rectum, prostate, and vagina. During delivery
of treatment, some level of radiation will also be delivered to healthy tissue, including the bowel, leading to acute and chronic toxicities. The large and small
bowels are very sensitive to radiation and the larger the dose of radiation the greater the damage to normal bowel tissue. Radiation enteritis is a condition in
which the lining of the bowel becomes swollen and inflamed during or after radiation therapy to the abdomen, pelvis, or rectum. Most tumors in the abdomen
and pelvis need large doses, and almost all patients receiving radiation to the abdomen, pelvis, or rectum will show signs of acute enteritis.

Patients with acute enteritis may have nausea, vomiting, abdominal pain and bleeding, among other symptoms. Some patients may develop dehydration and
require hospitalization. With diarrhea, the gastrointestinal tract does not function normally, and nutrients such as fat, lactose, bile salts, and vitamin B12 are not
well absorbed.

Symptoms will usually resolve within 2-6 weeks after therapy has ceased. Radiation enteritis is often not a self-limited illness, as over 80% of patients who
receive abdominal radiation therapy complain of a persistent change in bowel habits. Moreover, acute radiation injury increases the risk of development of
chronic radiation enteropathy, and overall 5% to 15% of the patients who receive abdominal or pelvic irradiation will develop chronic radiation enteritis.

There are over 100,000 patients annually in the U.S. who receive abdominal or pelvic external beam radiation treatment for cancer, and these patients are at
risk of developing acute and chronic radiation enteritis.

orBec® –for Treating Chronic GI GVHD

orBec® is a two tablet delivery system of BDP specifically designed for oral use that allows for delivery of immediate and delayed release BDP to treat the
gastrointestinal manifestation of chronic GVHD, the organ system where GVHD is most frequently encountered and highly problematic. orBec® is intended
to reduce the need for systemic immunosuppressive drugs such as prednisone to treat chronic GI GVHD. The active ingredient in orBec® is BDP, a highly
potent, topically active corticosteroid that has a local effect on inflamed tissue. BDP has been marketed in the U.S. and worldwide since the early 1970s as the
active pharmaceutical ingredient in a nasal spray and in a metered-dose inhaler for the treatment of patients with allergic rhinitis and asthma. orBec® has been
awarded orphan drug designations in the U.S. and in Europe for the treatment of GI GVHD. In September 2012, we received a $300,000 two-year SBIR grant
awarded by the NIH to support a Phase 2 study for the treatment of chronic GI GVHD.

7

 
 
 
 
 
 
 
 
About Chronic GVHD

GVHD is a major complication of allogeneic hematopoietic cell transplantation. GVHD is an inflammatory disease initiated by T cells in the donor graft that
recognize histocompatibility and other tissue antigens of the host, and is mediated by a variety of effector cells and inflammatory cytokines. GVHD presents
in both acute and chronic forms. The symptoms of chronic GVHD typically present at between 100 days and three years post-transplant.

Chronic  GVHD  has  features  resembling  autoimmune  and  other  immunologic  disorders  such  as  scleroderma,  Sjögren  syndrome,  primary  biliary  cirrhosis,
wasting syndrome, bronchiolitis obliterans, immune cytopenias and chronic immunodeciency. The manifestations of chronic GVHD may be restricted to a
single  organ  or  tissue  or  may  be  widespread.  Chronic  GVHD  can  lead  to  debilitating  consequences,  e.g.,  joint  contractures,  loss  of  sight,  end-stage  lung
disease, or mortality resulting from profound chronic immune suppression leading to recurrent or life-threatening infections.

Treatment of chronic GVHD is a challenge because it can be refractory to frontline immunosuppression. High-dose systemic corticosteroids are used with
some  success  but  carry  significant  toxicity.  The  risks  of  prolonged  immunosuppression  include  local  and  disseminated  infections,  Epstein-Barr  virus
associated  lymphoproliferative  disease,  hypothalamic-pituitary-adrenal  (“HPA”)  axis  suppression,  myopathy,  glucose  intolerance,  neuropsychiatric  disease
and bone demineralization.

Vaccines/BioDefense Overview

ThermoVax™ – Thermostability Technology

Our thermostability technology, ThermoVax™, is a novel method of rendering aluminum salt, (known colloquially as Alum), adjuvanted vaccines stable at
elevated temperatures. Alum is the most widely employed adjuvant technology in the vaccine industry. The value of ThermoVax™ lies in its potential ability
to eliminate the need for cold-chain production, transportation, and storage for Alum adjuvanted vaccines. This would relieve companies of the high costs of
producing  and  maintaining  vaccines  under  refrigerated  conditions.  The  World  Health  Organization  (“WHO”)  reports  that  50%  of  all  vaccines  around  the
world are wasted due to thermostability issues. This is due to the fact that most Alum adjuvanted vaccines need to be maintained at between 2 and 8 degrees
Celsius  (“C”)  and  even  brief  excursions  from  this  temperature  range  (especially  below  freezing)  usually  necessitates  the  destruction  of  the  product  or  the
initiation  of  costly  stability  programs  specific  for  the  vaccine  lots  in  question.  The  savings  realized  from  the  elimination  of  cold  chain  costs  and  related
product losses would in turn significantly increase the profitability of vaccine products. Elimination of the cold chain would also further facilitate the use of
these  vaccines  in  the  lesser  developed  parts  of  the  world.  ThermoVax™  has  the  potential  to  facilitate  easier  storage  and  distribution  of  strategic  national
stockpile vaccines in emergency settings.

ThermoVax™ development is being supported pursuant to our $9.4 million National Institute of Allergy and Infectious Diseases (“NIAID”) grant enabling
development of thermo-stable ricin (RiVax™) and anthrax (VeloThrax™) vaccines. Proof-of-concept preclinical studies with ThermoVax™ indicate that it is
able to produce stable vaccine formulations using adjuvants, protein immunogens, and other components that ordinarily would not withstand long temperature
variations exceeding customary refrigerated storage conditions. These studies were conducted with our aluminum-adjuvanted ricin toxin vaccine, RiVax™,
made  under  precise  lyophilization  conditions  using  excipients  that  aid  in  maintaining  native  protein  structure  of  the  ricin  A  chain,  the  immunogenic
compound of the vaccine. When RiVax™ was kept at 40 degrees C for over three months, all of the animals vaccinated with the lyophilized RiVax™ vaccine
developed potent and high titer neutralizing antibodies. Confirmatory results have extended the stability to more than three months when the vaccine is kept at
40 degrees C. In contrast, animals that were vaccinated with the liquid RiVax™ vaccine kept at 40 degrees C did not develop neutralizing antibodies and were
not protected against ricin exposure. The ricin A chain is extremely sensitive to temperature and rapidly loses the ability to induce neutralizing antibodies
when exposed to temperatures higher than 8 degrees C.

8

 
 
 
 
Near term progress with ThermoVax™ will allow us to seek out potential partnerships with companies marketing FDA/ex-U.S. health authority approved
Alum adjuvanted vaccines that are interested in eliminating the need for cold chain for their products. ThermoVax™ will further enable Soligenix to expand
its vaccine development expertise beyond biodefense into the infectious disease space and also has the potential to allow for the development of multivalent
vaccines (e.g., combination ricin-anthrax vaccine).

ThermoVax™ is the subject of U.S. patent application number 12/532,225 filed January 29, 2010 entitled “Method of Preparing an Immunologically-Active
Adjuvant-Bound  Dried  Vaccine  Composition”  and  also  U.S.  patent  application  number  13/474,661  filed  May  17,  2012  entitled  “Thermostable  Vaccine
Compositions and Methods of Preparing Same.” These patents and their corresponding foreign filings are pending and licensed to Soligenix by the University
of  Colorado  (“UC”)  and  they  address  the  use  of  adjuvants  in  conjunction  with  vaccines  that  are  formulated  to  resist  thermal  inactivation.  The  license
agreement covers thermostable vaccines for biodefense as well as other potential vaccine indications.

RiVax™ – Ricin Toxin Vaccine

RiVax™ is our proprietary vaccine developed to protect against exposure to ricin toxin, and is the first ricin. With RiVax™, we are a world leader in ricin
toxin  vaccine  research.  The  immunogen  in  RiVax™  induces  a  protective  immune  response  in  animal  models  of  ricin  exposure  and  functionally  active
antibodies in humans. The immunogen consists of a genetically inactivated subunit ricin A chain that is enzymatically inactive and lacks residual toxicity of
the  holotoxin.  Two  Phase  1  human  clinical  trials  have  been  completed.  The  development  of  RiVax™  has  been  sponsored  through  a  series  of  overlapping
challenge  grants,  UC1,  and  cooperative  grants,  U01,  from  the  NIH,  granted  to  Soligenix  and  to  the  University  of  Texas  Southwestern  Medical  Center
(“UTSW”) where the vaccine originated. The second clinical trial was supported by a grant from the FDA's Office of Orphan Products to UTSW. Soligenix
and  UTSW  have  collectively  received  approximately  $25  million  in  grant  funding  from  the  NIH  for  RiVax™.  Results  of  the  first  Phase  1  human  trial  of
RiVax™ established that the immunogen was safe and induced antibodies anticipated to protect humans from ricin exposure. The antibodies generated from
vaccination,  concentrated  and  purified,  were  capable  of  conferring  immunity  passively  to  recipient  animals,  indicating  that  the  vaccine  was  capable  of
inducing functionally active antibodies in humans. The outcome of this study was published in the Proceedings of the National Academy of Sciences (Vitetta
et al., 2006, PNAS, 105:2268-2273). The second trial, sponsored by UTSW, evaluated a more potent formulation of RiVax™ that contained an aluminum
adjuvant (Alum), was completed in September 2012. The results of the Phase 1B study indicated that Alum adjuvanted RiVax™ was safe and well tolerated,
and  induced  greater  ricin  neutralizing  antibody  levels  in  humans  than  adjuvant-free  RiVax™.  The  outcomes  of  this  second  study  were  published  in  the
Clinical  and  Vaccine  Immunology  (Vitetta  et  al.,  2012,  Clin.  Vaccine  Immunol.  10:1697-9).  We  have  adapted  the  original  manufacturing  process  for  the
immunogen  contained  in  RiVax™  for  large  scale  manufacturing  and  are  further  establishing  correlates  of  the  human  immune  response  in  non-human
primates.

RiVax™ is the subject of three issued U.S. patent numbers 6,566,500, 6,960,652, and 7,829,668, all entitled "Compositions and methods for modifying toxic
effects of proteinaceous compounds." This patent family includes composition of matter claims for the modified ricin toxin A chain which is the immunogen
contained in RiVax™, and issued in 2003, 2005 and 2010 respectively. The initial filing date of these patents is March 2000 and they are expected to expire in
March  2020.  The  issued  patents  contain  claims  that  describe  alteration  of  sequences  within  the  ricin  A  chain  that  affect  vascular  leak,  one  of  the  deadly
toxicities  caused  by  ricin  toxin.  Another  U.S.  patent  number  7,175,848  entitled  “Ricin  A  chain  mutants  lacking  enzymatic  activity  as  vaccines  to  protect
against aerosolized ricin,” was filed in October of 2000 and is expected to expire in October 2020. RiVax™ has also been granted Orphan Drug designation
by the FDA for the prevention of ricin intoxication.

9

 
 
 
 
 
About Ricin Toxin

Ricin toxin can be cheaply and easily produced, is stable over long periods of time, is toxic by several routes of exposure and thus has the potential to be used
as a biological weapon against military and/or civilian targets. As a bioterrorism agent, ricin could be disseminated as an aerosol, by injection, or as a food
supply contaminant. The potential use of ricin toxin as a biological weapon of mass destruction has been highlighted in a Federal Bureau of Investigations
Bioterror report released in November 2007 entitled Terrorism 2002-2005, which states that “Ricin and the bacterial agent anthrax are emerging as the most
prevalent agents involved in WMD investigations” (http://www.fbi.gov/stats-services/publications/terrorism-2002-2005/terror02_05.pdf).

The Centers for Disease Control (“CDC”) has classified ricin toxin as a Category B biological agent. Ricin works by first binding to glycoproteins found on
the exterior of a cell, and then entering the cell and inhibiting protein synthesis leading to cell death. Once exposed to ricin toxin, there is no effective therapy
available  to  reverse  the  course  of  the  toxin.  Currently,  there  is  no  FDA  approved  vaccine  to  protect  against  the  possibility  of  ricin  toxin  being  used  in  a
terrorist attack, or its use as a weapon on the battlefield, nor is there a known antidote for ricin toxin exposure.

In  January  of  2012,  a  Request  for  Information  (“RFI”)  was  issued  by  the  Chemical  Biological  Medical  Systems  –  Joint  Vaccine  Acquisition  Program
(“CBMS-JVAP”) of the Department of Defense (“DoD”). This RFI was entitled “Development of a Ricin Toxin Vaccine to FDA Approval”, and marks the
first time any agency of the U.S. government has specifically indicated an interest in development of a vaccine against ricin toxin. We intend to pursue this
avenue of funding to the fullest extent.

VeloThrax™ – Anthrax Vaccine

VeloThrax™  is  our  newly  acquired  proprietary  vaccine  based  on  a  recombinant  Protective  Antigen  (“rPA)  derivative  intended  for  use  against  anthrax.
Soligenix has entered into an exclusive license option with Harvard College to license VeloThrax™ (also known as DNI for dominant negative inhibitor).
VeloThrax™ is a translocation-deficient mutant of PA with double mutations of K397D and D425K that impede the conformational changes necessary for
endosomal  membrane  translocation  into  the  cell  cytoplasm.  In  the  absence  of  that  PA  translocation  step,  anthrax  toxin  trafficking  and  function  cease.
VeloThrax™  is  also  considered  a  more  immunogenic  candidate  than  native  rPA.  This  apparent  increase  in  immunogenicity  suggests  that  the  DNI  rPA  is
processed and presented to the immune system more efficiently by cellular antigen processing pathways, which is consistent with known properties of the
molecule.

DNI  versions  of  rPA  such  as  VeloThrax™  are  also  capable  of  inducing  antibodies  that  neutralize  the  activity  of  the  anthrax  toxin  complex.  Unlike  fully-
functional  rPA,  VeloThrax™  might  be  given  to  a  patient  post-exposure  without  risk  of  enhancing  intoxication  during  an  infection,  although  clinical  tests
involving  intravenous  administration  of  potentially  therapeutic  levels  of  DNI  rPA  resulted  in  serious  adverse  events  and  so  further  development  of  this
product as a therapeutic biological for blocking the effects of infection by B. anthracis was discontinued. Soligenix intends to test VeloThrax™ at a 1,000 fold
lower dose than previously tested for an intramuscular or intradermal vaccine.

VeloThrax™’s  greater  immunogenicity  could  lead  to  a  vaccine  that  can  be  administered  in  the  fewest  possible  doses  to  induce  the  highest  level  of  toxin
neutralizing antibodies. Utilizing ThermoVax™, we believe that we will be able to develop VeloThrax™ into a vaccine with an improved stability profile, an
issue  that  has  proven  challenging  in  the  development  of  other  anthrax  vaccines.  Extended  stability  at  ambient  temperatures  would  be  a  significant
improvement  for  stockpiled  vaccines  and  one  which  is  not  expected  from  conventional  vaccines.  Further,  a  large-scale,  Good  Manufacturing  Practice
(“cGMP”)  production  methodology  has  already  been  completed.  Assuming  long-term  stability  can  be  met,  VeloThrax™  could  be  stockpiled  for  general
prophylactic as well as a post exposure use.

10

 
 
 
 
 
The overall objective of the VeloThrax™ program is to rapidly and efficiently develop a next generation anthrax vaccine which combines a well established,
safe  and  relatively  low  risk  vaccine  development  and  dosing  approach  with  targeted,  proven  innovative  strategies.  VeloThrax™  will  potentially  be  a
combination  of  a  stable,  readily  manufactured  mutant  rPA  subunit  antigen  with  next  generation,  clinically  compatible  adjuvants  which  have  been
demonstrated to enhance potency and reduce the time and number of vaccine doses required to achieve protective titer using a variety of vaccine antigens.
This blend of proven yet innovative technologies will provide the Public Health Emergency Medical Countermeasures Enterprise (“PHEMCE”) and the DoD
with a safe and stable alternative to the existing licensed anthrax vaccine product. Soligenix also proposes to adapt newly developed glassification technology
(initially  developed  under  an  ongoing  NIAID  grant  to  stabilize  exceptionally  unstable  ricin  toxin/adjuvant  formulations)  to  enable  a  thermostable,  dried,
single vial, pre-formulated adjuvanted rPA vaccine which is suitable for both long term storage and field use without typical cold chain constraints.

About Anthrax

Anthrax is an acute infectious disease that is easily transmitted to humans by environmentally durable spores that are produced by Bacillus anthracis. Because
the  spores  are  robust  and  contagious,  anthrax  is  considered  a  Category  A  bioterror  threat.  Anthrax  infection  can  occur  in  three  forms:  cutaneous  (skin),
inhalation, and gastrointestinal. Inhaled spores can cause a rapidly progressing form of anthrax since the spores are transported to lymph nodes near the lungs
where  they  germinate,  releasing  vegetative  bacteria  into  the  bloodstream.  Bacteria  synthesize  a  complex  series  of  toxin  components  that  make  up  anthrax
toxin, resulting in overwhelming toxemia that causes shock and organ failure. Treatment of anthrax involves long-term antibiotic therapy, since ungerminated
spores can lie dormant in the lungs for up to 60 days. Only a few inhaled spores can cause inhalational anthrax. Once the toxin has entered the bloodstream,
antibiotics are ineffective, and only toxin-specific therapy is effective. Passively transferred antibodies can neutralize anthrax toxins and can be used post-
exposure in conjunction with antibiotics. Because of the long residence time of spores in the lung, it is possible to vaccinate post-exposure, but the onset of
neutralizing antibodies must occur during the period of antibiotic therapy.

OrbeShield™ –for Treating GI ARS

OrbeShield™ (an oral immediate and delayed release formulation of the topically active corticosteroid BDP) is being developed for the treatment of GI ARS.
Corticosteroids are the best understood and most widely used class of anti-inflammatory drugs. BDP is a corticosteroid with predominantly topical activity
that is approved for use in asthma, psoriasis and allergic rhinitis.

OrbeShield™  has  demonstrated  positive  preclinical  results  in  a  canine  GI  ARS  model  which  indicate  that  dogs  treated  with  OrbeShield™  demonstrated
statistically  significant  (p=0.04)  improvement  in  survival  with  dosing  at  either  2  hours  or  24  hours  after  exposure  to  lethal  doses  of  total  body  irradiation
(“TBI”) when compared to control dogs. OrbeShield™ appears to significantly mitigate the damage to the GI epithelium caused by exposure to high doses of
radiation using a well-established canine model of GI ARS.

The GI tract is highly sensitive to ionizing radiation and the destruction of epithelial tissue is one of the first effects of radiation exposure. The rapid loss of
epithelial cells leads to inflammation and infection that are often the primary cause of death in acute radiation injury. This concept of GI damage also applies
to the clinical setting of oncology, where high doses of radiation cannot be administered effectively to the abdomen because radiation is very toxic to the
intestines.  This  is  the  same  type  of  toxicity  that  occurs  in  Soligenix’s  acute  radiation  enteritis  clinical  program  with  SGX201.  As  a  result,  there  is  a  dual
avenue  of  development  for  Soligenix,  and  OrbeShield™  is  potentially  a  “dual  use”  compound,  a  desirable  characteristic  which  is  a  specific  priority  of
Biomedical Advanced Research and Development Authority(“BARDA”) for ARS and other medical countermeasure indications. BARDA  recently  invited
Soligenix to submit a full contract proposal for a potential multi-year, multi-million dollar contract to develop OrbeShield™ from its current level of technical
readiness to potential FDA approval. In response, Soligenix submitted its contract proposal in February 2013. We expect a response in the second half of
2013.

The FDA has cleared the Investigational New Drug (“IND”) application for OrbeShield™ for the mitigation of morbidity and mortality associated with GI
ARS. Previously, development of OrbeShield™ had been largely supported by a $1 million NIH grant to Soligenix’s academic partner, the Fred Hutchinson
Cancer  Research  Center.  In  July  2012,  the  Company  received  an  SBIR  grant  from  NIAID  of  approximately  $600,000  to  support  further  preclinical
development  of  OrbeShield™  for  the  treatment  of  acute  GI  ARS.  The  FDA  has  awarded  OrbeShield™  Orphan  Drug  and  Fast  Track  designation  for  the
prevention of death following a potentially lethal dose of total body irradiation during or after a radiation disaster.

11

 
 
 
 
 
 
 
About GI ARS

ARS occurs after toxic radiation exposure and involves several organ systems, notably the bone marrow, the GI tract and later the lungs. In the event of a
nuclear  disaster  or  terrorist  detonation  of  a  nuclear  bomb,  casualties  exposed  to  >2  Gy  are  at  high  risk  for  development  of  clinically  significant  ARS.
Exposure to high doses of radiation exceeding 10-12 Gy causes acute GI injury which can result in death in 5-15 days. The GI tract is highly sensitive due to
the requirement for incessant proliferation of crypt stem cells and production of mucosal epithelium. The extent of injury to the bone marrow and the GI tract
are the principal determinants of survival after exposure to TBI. Although the hematopoietic syndrome can be rescued by bone marrow transplantation or
growth factor administration, there is no established treatment or preventive measure for the GI damage that occurs after high-dose radiation. Therefore, there
is an urgent need to develop specific medical counter measures against the lethal pathophysiological manifestations of radiation-induced GI injury.

The Drug Approval Process

Before  marketing,  each  of  our  products  must  undergo  an  extensive  regulatory  approval  process  conducted  by  the  FDA  and  applicable  agencies  in  other
countries. Testing, manufacturing, commercialization, advertising, promotion, export and marketing, among other things, of the proposed products are subject
to extensive regulation by government authorities in the U.S. and other countries. All products must go through a series of tests, including advanced human
clinical trials, which the FDA is allowed to suspend as it deems necessary to protect the safety of patients.

Our products will require regulatory clearance by the FDA and by comparable agencies in other countries, prior to commercialization. The nature and extent
of regulation differs with respect to different products. In order to test, produce and market certain therapeutic products in the U.S., mandatory procedures and
safety standards, approval processes, manufacturing and marketing practices established by the FDA must be satisfied.

An IND application is required before human clinical testing in the U.S. of a new drug compound or biological product can commence. The IND application
includes  results  of  pre-clinical  animal  studies  evaluating  the  safety  and  efficacy  of  the  drug  and  a  detailed  description  of  the  clinical  investigations  to  be
undertaken.

Clinical trials are normally done in three phases, although the phases may overlap. Phase 1 trials are smaller trials concerned primarily with metabolism and
pharmacologic actions of the drug and with the safety of the product. Phase 2 trials are designed primarily to demonstrate effectiveness and safety in treating
the disease or condition for which the product is indicated. These trials typically explore various doses and regimens. Phase 3 trials are expanded clinical
trials intended to gather additional information on safety and effectiveness needed to clarify the product’s benefit-risk relationship and generate information
for  proper  labeling  of  the  drug,  among  other  things.  The  FDA  receives  reports  on  the  progress  of  each  phase  of  clinical  testing  and  may  require  the
modification, suspension or termination of clinical trials if an unwarranted risk is presented to patients. When data is required from long-term use of a drug
following its approval and initial marketing, the FDA can require Phase 4, or post-marketing, studies to be conducted.

With certain exceptions, once successful clinical testing is completed, the sponsor can submit an NDA for approval of a drug. The process of completing
clinical trials for a new drug is likely to take a number of years and require the expenditure of substantial resources. Furthermore, the FDA or any foreign
health authority may not grant an approval on a timely basis, if at all. The FDA may deny the approval of an NDA, in its sole discretion, if it determines that
its  regulatory  criteria  have  not  been  satisfied  or  may  require  additional  testing  or  information.  Among  the  conditions  for  marketing  approval,  is  the
requirement  that  the  prospective  manufacturer’s  quality  control  and  manufacturing  procedures  conform  to  good  manufacturing  practice  regulations.  In
complying with standards contained in these regulations, manufacturers must continue to expend time, money and effort in the area of production, quality
control and quality assurance to ensure full technical compliance. Manufacturing facilities, both foreign and domestic, also are subject to inspections by, or
under the authority of, the FDA and by other federal, state, local or foreign agencies.

12

 
 
 
 
 
 
Even after initial FDA or foreign health authority approval has been obtained, further studies, including Phase 4 post-marketing studies, may be required to
provide additional data on safety and will be required to gain approval for the marketing of a product as a treatment for clinical indications other than those
for which the product was initially tested. Also, the FDA or foreign regulatory authority will require post-marketing reporting to monitor the side effects of
the drug. Results of post-marketing programs may limit or expand the further marketing of the products. Further, if there are any modifications to the drug,
including any change in indication, manufacturing process, labeling or manufacturing facility, an application seeking approval of such changes will likely be
required to be submitted to the FDA or foreign regulatory authority.

In the U.S., the Federal Food, Drug, and Cosmetic Act, the Public Health Service Act, the Federal Trade Commission Act, and other federal and state statutes
and regulations govern or influence the research, testing, manufacture, safety, labeling, storage, record keeping, approval, advertising and promotion of drug,
biological,  medical  device  and  food  products.  Noncompliance  with  applicable  requirements  can  result  in,  among  other  things,  fines,  recall  or  seizure  of
products, refusal to permit products to be imported into the U.S., refusal of the government to approve product approval applications or to allow the Company
to enter into government supply contracts, withdrawal of previously approved applications and criminal prosecution. The FDA may also assess civil penalties
for violations of the Federal Food, Drug, and Cosmetic Act involving medical devices.

For  biodefense  development,  such  as  with  RiVax™  and  OrbeShield™,  the  FDA  has  instituted  policies  that  are  expected  to  result  in  shorter  pathways  to
market. This potentially includes approval for commercial use utilizing the results of animal efficacy trials, rather than efficacy trials in humans. However, the
Company will still have to establish that the vaccine and countermeasures it is developing are safe in humans at doses that are correlated with the beneficial
effect  in  animals.  Such  clinical  trials  will  also  have  to  be  completed  in  distinct  populations  that  are  subject  to  the  countermeasures;  for  instance,  the  very
young  and  the  very  old,  and  in  pregnant  women,  if  the  countermeasure  is  to  be  licensed  for  civilian  use.  Other  agencies  will  have  an  influence  over  the
benefit-risk scenarios for deploying the countermeasures and in establishing the number of doses utilized in the Strategic National Stockpile. We may not be
able  to  sufficiently  demonstrate  the  animal  correlation  to  the  satisfaction  of  the  FDA,  as  these  correlates  are  difficult  to  establish  and  are  often  unclear.
Invocation of the animal rule may raise issues of confidence in the model systems even if the models have been validated. For many of the biological threats,
the animal models are not available and the Company may have to develop the animal models, a time-consuming research effort. There are few historical
precedents, or recent precedents, for the development of new countermeasure for bioterrorism agents. Despite the Animal Rule, the FDA may require large
clinical trials to establish safety and immunogenicity before licensure and it may require safety and immunogenicity trials in additional populations. Approval
of biodefense products may be subject to post-marketing studies, and could be restricted in use in only certain populations.

Marketing Strategies

On December 20, 2012, we re-acquired the North American and European commercial rights to oral BDP through an amendment of our collaboration and
supply  agreement  with  Sigma-Tau  Pharmaceuticals,  Inc  (“Sigma-Tau”).  The  amendment  requires  us  to  make  certain  approval  and  commercialization
milestone payments to Sigma-Tau which could reach up to $6 million. In addition, the Company has agreed to pay Sigma-Tau: (a) a royalty amount equal to
3% of all net sales of oral BDP made directly by the Company, and any third-party partner and/or their respective affiliates in the U.S., Canada, Mexico and in
each country in the European Territory for the later to occur of: (i) a period of ten years from the first commercial sale of oral BDP in each country, or (ii) the
expiration of the Company’s patents and patent applications relating to oral BDP in such country; and (b) 15% of all up-front payments, milestone payments
and any other consideration (exclusive of equity payments) received by the Company and/or a potential partner from the Company’s and/or potential partner’s
licensees, distributors and agents for oral BDP in each relevant country in the territory, which amount will be paid on a product-by-product and a country-by-
country basis for the Payment Period.

13

 
 
 
 
 
 
 
We intend to seek partners to out-license all or portions of our programs. We are keen to advance our products through development and into the market in as
many indications as possible.

We  have  had  and  are  having  strategic  discussions  with  a  number  of  pharmaceutical  companies  regarding  the  partnering  or  sale  of  our  biodefense  vaccine
products. We may market our biodefense vaccine products directly to government agencies. We believe that both military and civilian health authorities of the
U.S. and other countries will increase their stockpiling of therapeutics and vaccines to treat and prevent diseases and conditions that could ensue following a
bioterrorism attack.

Competition

Our  competitors  are  pharmaceutical  and  biotechnology  companies,  most  of  whom  have  considerably  greater  financial,  technical,  and  marketing  resources
than we currently have. Another source of competing technologies is universities and other research institutions, including the U.S. Army Medical Research
Institute of Infectious Diseases, and we face competition from other companies to acquire rights to those technologies.

SGX94/942 Competition

SGX94  has  a  unique  mechanism  of  action  in  combating  bacterial  infections  and  is  complementary  to  the  use  of  antibiotics.  Thus  there  are  no  direct
competitors  at  this  time.  Bacterial  infections  are  routinely  treated  with  antibiotics  and  SGX94  treatment  is  anticipated  to  be  utilized  primarily  where
antibiotics  are  insufficient  (e.g.,  due  to  antibiotic  resistance)  or  contra-indicated  (e.g.,  in  situations  where  the  development  of  antibiotic  resistance  is  a
significant  concern).  Many  groups  are  working  on  the  antibiotic  resistance  problem  and  research  into  the  innate  immune  system  is  intensifying,  making
emerging competition likely (e.g. Celtaxsys, Innaxon Therapeutics, Innate Pharma).

There is currently one drug approved for the treatment of oral mucositis in hematological cancer only (palifermin). There are currently no approved drugs for
treatment of oral mucositis in cancers with solid tumors (e.g., head and neck cancer). There are at least 5 drugs in clinical development for oral mucositis – 1
in phase 3 (under development by Daewoong Pharmaceutical Co., Ltd), 3 in phase 2 (under development by ActoGenix N.V., BioAlliance Pharma S.A. and
Alder Biopharmaceuticals Inc.) and 1 in phase 1 (under development by PolyMedix, Inc.). In addition, there are medical devices approved for the treatment of
oral mucositis including MuGard, GelClair, Episil and Caphosol. These devices attempt to create a protective barrier around the oral ulceration; however,
none of these devices are biologically based.

Oral BDP Competition

There  are  currently  approximately  41  compounds  either  on  the  market  or  in  clinical  development  for  Crohn’s  disease  of  which  14  are  biologics,  6
immunomodulators, 3 cell-based therapies, 2 steroids, 2 anti-inflammatory, 2 5-ASAs, 1 antibiotic, and 11 others that are unclassified. In the U.S., there are
24 compounds on market or in development including 4 compounds in Phase 3.

There  are  4  compounds  currently  in  development  or  on  the  market  specifically  for  pediatric  Crohn’s  disease.  Of  these,  Remicade  (infliximab)  is  the  only
compound  currently  with  an  indication  in  pediatric  Crohn’s  disease.  There  are  two  other  marketed  biologics,  Cimzia  (certolizumab)  and  Tysabri
(natalizumab),  in  Phase  2  for  pediatric  Crohn’s.  Entocort  (enteric-coated  budesonide)  is  also  currently  in  Phase  3  trials  in  pediatric  Crohn’s  disease.  We
believe that SGX203’s unique release characteristics, intended to deliver topically active therapy to both the upper and lower gastrointestinal systems, should
make SGX203 an attractive alternative to existing therapies for inflammatory diseases of the gastrointestinal tract.

14

 
 
 
 
 
 
Competition is also intense in the gastroenterology and transplant areas. Companies are attempting to develop technologies to treat GVHD by suppressing the
immune system through various mechanisms. Some companies, including Osiris, Abgenix, and PDL BioPharma, Inc., are developing monoclonal antibodies
to treat GVHD. Novartis, Medimmune, and Ariad are developing both gene therapy products and small molecules to treat GVHD. All of these products are in
various stages of development. Kiadis Pharma is also developing products for the treatment of GVHD. In addition, there are investigator-sponsored clinical
trials exploring the use of approved drugs such as Enbrel®, which has been approved by the FDA for the treatment of rheumatoid arthritis, in the treatment of
GVHD.

Additionally, Chiesi Pharmaceuticals markets, in certain countries in Europe, a delayed-release oral formulation of beclomethasone dipropionate, the active
ingredient of orBec®, called CLIPPER™ for ulcerative colitis.

ThermoVaxTM Competition

Multiple  groups  and  companies  are  working  to  address  the  unmet  need  of  vaccine  thermostability  using  a  variety  of  technologies.  In  addition,  both  non-
governmental  organizations  such  as  the  Bill  and  Melinda  Gates  Foundation  and  PATH,  as  well  as  academic  organizations  such  as  the  Kansas  University
Macromolecular and Vaccine Stabilization Center have programs designed to advance technologies which may address this need.

The majority of stabilization technologies currently being developed involve mixing vaccine antigen +/- adjuvant with various proprietary excipients or co-
factors that either serve to stabilize the vaccine or biological product in a liquid or dried (lyophilized) form. Examples of these approaches include the use of
various plant-derived sugars and macromolecules being developed by companies such as Stabilitech and synthetic polymers such as Pluronic F127 (Endo
Pharmaceuticals under Gates Foundation funding). VBI (Variation Biotechnologies, Inc) intends to employ a lipid system (resembling liposomes) to stabilize
viral antigens, including virus-like particles (VLPs), and apply it to a conventional influenza vaccine among others

Other approaches involve process variations to freeze-dry live virus vaccines. For example, PaxVax intends to employ a spray drying technology in concert
with enteric coating to achieve formulations for room temperature stability of live virus vaccines using adenovirus vectors. VBI has the capacity to utilize
their  proprietary  stabilization  technology  for  a  number  of  vaccines  (as  a  co-development  service,  similar  to  the  business  model  being  developed  by
Stabilitech), whereas PaxVax is applying the technology to their own proprietary vaccine development programs. Stabilitech uses combinations of excipients,
which include glassifying sugars similar to the ThermoVax™ technology, and variations in drying cycles during lyophilization, as does the ThermoVax™
technology.  Another  Soligenix  competitor,  Endo  Pharmaceuticals  is  working  to  identify  Pluronic  polymer-based  formulations  that  stabilize  measles  and
hepatitis B vaccines from -10°C to 45°C.

Additionally, companies like Pharmathene, Panacea Biotech, and Compass Biotech are developing proprietary vaccines with the application of some form of
stabilization technology.

Vaccines/BioDefense Competition

We face competition in the area of biodefense product development from various public and private companies, universities and governmental agencies, such
as the U.S. Army, some of whom may have their own proprietary technologies which may directly compete with the our technologies.

The currently available anthrax vaccine known as BioThrax® (Anthrax Vaccine Adsorbed or AVA) marketed by Emergent BioSolutions, Inc. was developed
nearly 50 years ago from a culture filtrate derived from anthrax bacteria. Consequently, it contains a number of different proteins, some of which are believed
to potentially contribute to the adverse events that have been reported in the literature (up to 7-8% serious adverse events) and which prompted agencies like
the Institute of Medicine to recommend adoption of newer and safer anthrax vaccines. BioThrax® is FDA approved for the prevention of anthrax infection,
but requires five doses over a period of eighteen months to achieve protective immunity.

15

 
 
 
 
With  respect  to  the  development  of  PA-based  vaccines  and  therapeutics  such  as  VeloThrax™,  there  are  a  number  of  other  companies  in  preclinical  and
clinical development including Emergent, Pharmathene, Dynavax, Panacea Biotech, Paxvax, Elusys, and Pfenex.

Cangene is currently developing an anthrax immune globulin therapeutic based on plasma collected from military personnel who have been vaccinated with
BioThrax®. Human Genome Sciences is developing a monoclonal antibody to Bacillus anthracis, referred to as ABthrax™, as a post-exposure therapeutic for
anthrax infection. Elusys Therapeutics is developing a monoclonal antibody to Bacillus anthracis, known as Anthim™, as a pre-exposure and post-exposure
prophylaxis against anthrax infection, as well as an active treatment of the disease. Pharmathene and Medarex are collaborating to develop a human antibody
to anthrax, known as Valortim™. Bavarian Nordic is developing a multivalent combination vaccine against both anthrax and smallpox.

The  only  potential  competition  to  RiVax™  is  being  developed  by  the  U.S.  Army  Medical  Research  Institute  of  Infectious  Diseases  (“USAMRIID”),  the
DoD’s lead laboratory for medical research to counter biological threats. Development of this product, known as RVEc™, is proceeding under a program led
by  Dr.  Len  Smith,  who  has  been  working  for  many  years  to  develop  a  ricin  vaccine  candidate.  Similar  to  RiVax™,  RVEc™  has  been  shown  to  be  fully
protective  in  mice  exposed  to  lethal  doses  of  ricin  toxin  by  the  aerosol  route.  Further  studies,  in  both  rabbits  and  nonhuman  primates,  were  successfully
conducted to evaluate RVEc™’s safety as well as its immunogenicity.

In  the  area  of  radiation-protective  antidotes  such  as  OrbeShield™,  various  companies,  such  as  Cleveland  Biolabs,  Aeolus  Pharmaceuticals,  Boulder
Biotechnology, RxBio, Inc., Avaxia Biologics, Exponential Biotherapies Inc., Osiris Therapeutics, Inc., ImmuneRegen BioSciences, Inc., Neumedicines, Inc.,
Cellerant  Therapeutics,  Onconova  Therapeutics,  Inc.,  Araim  Pharmaceuticals,  Inc.,  EVA  Pharmaceuticals,  Terapio,  Cangene  Corporation,  Humanetics
Corporation  and  the  University  of  Arkansas  Medical  Sciences  Center  are  developing  biopharmaceutical  products  that  may  directly  compete  with
OrbeShield™, even though their approaches to such treatment are different.

RxBio, Avaxia Biologics and the University of Arkansas have programs specifically for GI ARS. RxBio’s Rx100 is a stem cell protectant designed as a single
dose (oral or injection) which has shown promise in nonhuman primate studies. Avaxia’s is developing an orally delivered anti-TNF antibody as a treatment
agent for exposure to radiation following a nuclear accident, attack or explosion. Pasireotide, a drug in development by Novartis for Cushing’s disease, is
being developed at the University of Arkansas to protect the intestine by reducing pancreatic secretions that exacerbate intestinal inflammation.

Patents and Other Proprietary Rights

Our goal is to obtain, maintain and enforce patent protection for our products, formulations, processes, methods and other proprietary technologies, preserve
our trade secrets, and operate without infringing on the proprietary rights of other parties, both in the U.S. and in other countries. Our policy is to actively
seek to obtain, where appropriate, the broadest intellectual property protection possible for our product candidates, proprietary information and proprietary
technology through a combination of contractual arrangements and patents, both in the U.S. and elsewhere in the world.

We also depend upon the skills, knowledge and experience of our scientific and technical personnel, as well as that of our advisors, consultants and other
contractors, none of which is patentable. To help protect our proprietary knowledge and experience that is not patentable, and for inventions for which patents
may be difficult to enforce, we rely on trade secret protection and confidentiality agreements to protect our interests. To this end, we require all employees,
consultants,  advisors  and  other  contractors  to  enter  into  confidentiality  agreements,  which  prohibit  the  disclosure  of  confidential  information  and,  where
applicable, require disclosure and assignment to us of the ideas, developments, discoveries and inventions important to our business.

16

 
 
 
 
We  are  the  exclusive  licensee  of  issued  U.S.  patents  8,263,582  and  6,096,731  that  cover  the  use  of  oral  BDP  for  treating  inflammatory  disorders  of  the
gastrointestinal tract and the prevention and treatment of GI GVHD, respectively. We also have European patent EP 1392321 claiming the use of topically
active corticosteroids in orally administered dosage forms that act concurrently to treat inflammation in the upper and lower gastrointestinal tract, as well as
European patent EP 2242477 claiming the use of orally ingested BDP for treatment of interstitial lung disease.

The subject of U.S. patent application number 12/633,631 filed December 8, 2009 and corresponding European patent application number 09836727.9 is the
use of topically active BDP in radiation and chemotherapeutics injury.

Recently, we have expanded our patent portfolio to include innate defense regulation through the acquisition of the novel drug technology, known as SGX94.
By  binding  to  the  pivotal  regulatory  protein  p62,  also  known  as  sequestosome-1,  SGX94  regulates  the  innate  immune  system  to  reduce  inflammation,
eliminate infection and enhance healing. As part of the acquisition, we acquired all rights, including composition of matter patents for SGX94 as well as other
analogs and crystal structures of SGX94 with its protein target p62, including U.S. patent 8,124,721 and additional pending applications.

In addition to issued and pending patents, we also have “Orphan Drug” designations for SGX203 in the U.S. for pediatric Crohn’s disease, OrbeShield™ in
the U.S. for GI ARS, orBec® in the U.S. and Europe (E.U.) for GI GVHD, as well as for RiVax™ in the U.S. Our Orphan Drug designations provide for
seven years of post approval marketing exclusivity in the U.S. and ten years exclusivity in Europe. We have pending patent applications for this indication
that, if granted, may extend our anticipated marketing exclusivity beyond the U.S. seven year or E.U. 10 year post-approval exclusivity provided by Orphan
Drug legislation.

Oral BDP License Agreement

On November 24, 1998, the Company, known at the time as Enteron Pharmaceuticals, Inc. (“Enteron”) and George B. McDonald (“Dr. McDonald”) entered
into an exclusive license agreement for the rights to intellectual property, including know-how, relating to orBec®/oral BDP. The Company has an exclusive
license to commercially exploit the covered products worldwide, subject to Dr. McDonald’s right to make and use the technology for research purposes and
the U.S. Government’s right to use the technology for government purposes. In consideration for the license, the Company has paid to Dr. McDonald a license
fee in the amount of $20,000 and is required to (i) reimburse Dr. McDonald for certain out-of-pocket expenses incurred by Dr. McDonald in connection with
the patent applications and issued patents, (ii) pay Dr. McDonald a milestone payment in the amount of $300,000; (iii) issue Dr. McDonald shares of common
stock equal to 8% of the Company’s outstanding common stock as of November 24, 1998, with certain anti-dilution protection, and (iv) pay Dr. McDonald
royalty payments equal to 6% of net sales of the covered products.

Additionally, in the event that the Company sublicenses its rights under this license agreement, the Company will be required to pay Dr. McDonald 25% of
any sublicense fees and royalty payments paid by the sublicense to the Company.

The term of this agreement expires upon the expiration of the licensed patent applications or patents. After five years from the date of the agreement, Dr.
McDonald has the right to terminate this agreement in its entirety or to terminate exclusivity under the agreement if the Company or its sublicense has not
commercialized or are not actively attempting to commercialize a covered product.

Additionally,  the  agreement  terminates:  (i)  automatically  upon  the  Company  becoming  insolvent;  (ii)  upon  30  days  notice,  if  the  Company  breaches  any
obligation under the agreement without curing such breach during the notice period; and (iii) upon 90 days notice by the Company. After any termination, the
Company will have the right to sell its inventory for a period not to exceed three months following the date of termination, subject to the payment of the
amounts owed under the agreement.

17

 
 
 
 
 
On July 26, 2011, the Company, Enteron, and Dr. McDonald entered into an amendment to their exclusive license agreement. Under the license agreement,
Dr. McDonald would have been entitled to receive (i) $1,250,000 upon the closing of the July 26, 2011 amendment executed by the Company and Sigma-Tau;
and (ii) $250,000 upon an approval of orBec® by the EMEA. Pursuant to the amendment, the Company agreed to pay Dr. McDonald (i) $612,500 in cash and
$400,000  in  common  stock  of  the  Company  (based  upon  the  closing  price  of  the  Company’s  common  stock  on  July  26,  2011)  upon  the  closing  of  the
amendment between the Company and Sigma-Tau and (ii) $400,000 in cash upon an approval of orBec® by the EMEA.

On  December  20,  2012,  the  Company,  Enteron,  and  Dr.  McDonald  entered  into  an  amendment  to  their  exclusive  license  agreement.  Under  the  license
agreement, Dr. McDonald would have been entitled to receive (i) royalty payments equal to 6% of net sales of the covered products, and (ii) 25% of any
sublicense  fees  and  royalty  payments  paid  by  the  sublicense  to  the  Company.  Pursuant  to  the  amendment,  the  Company  agreed  to  pay  Dr.  McDonald  (i)
royalty payments equal to 3% of the net sales of the covered products and (ii) 10% of any sublicense fees and royalty payments paid by the sublicense to the
Company.

SGX 94 License Agreements

On December 18, 2012, we announced the acquisition of a novel drug technology, known as SGX94, representing a unique approach to modulation of the
innate immune system. SGX94 is an IDR that regulates the innate immune system to reduce inflammation, eliminate infection and enhance tissue healing by
binding to the pivotal regulatory protein p62, also known as sequestosome-1. As part of the acquisition, Soligenix acquired all rights, including composition
of matter patents, preclinical and Phase 1 clinical study datasets for SGX94. We also assumed a license agreement with UBC to advance the research and
development of the SGX94 technology. The license agreement with UBC provides us with exclusive worldwide rights to manufacture, distribute, market sell
and/or license or sublicense products derived or developed from this technology. Under the license agreement we are obligated to pay UBC (i) an annual
license maintenance fee of CAN $1,000, and (ii) milestone payments which could reach up to CAN $1.2 million.

ThermoVaxTM License Agreement

On September 1, 2009, we executed a worldwide exclusive option to license patent applications with the UC for ThermoVax™ which is the subject of U.S.
patent application number 60/896,429 filed on March 22, 2007 entitled “Method of Preparing an Immunologically-Active Adjuvant-Bound Dried Vaccine
Composition.” This patent and its corresponding foreign filings are pending and licensed to Soligenix by the UC and they address the use of adjuvants in
conjunction with vaccines that are formulated to resist thermal inactivation. The license agreement also covers thermostable vaccines for biodefense as well
as other potential vaccine indications. In addition, Soligenix in conjunction with UC, filed a provisional patent application number 61/487,206 on May 17,
2011 entitled: “Thermostable Vaccine Compositions and Methods of Preparing Same.”

RiVax™ License Agreement

In January 2003, we executed a worldwide exclusive option to license patent applications with UTSW for the nasal, pulmonary and oral uses of a non-toxic
ricin vaccine. In June 2004, we entered into a license agreement with UTSW for the injectable rights to the ricin vaccine and, in October 2004, we negotiated
the remaining oral rights to the ricin vaccine. Our license obligates us to pay $50,000 in annual license fees. Through this license, we have rights to the issued
patent number 7,175,848 entitled “Ricin A chain mutants lacking enzymatic activity as vaccines to protect against aerosolized ricin.” This patent includes
methods of use and composition claims for RiVax™.

VeloThrax™ License Option Agreement

In December of 2011, we optioned a license to the VeloThrax™ patent from the President and Fellows of Harvard College. VeloThrax™ is the subject of U.S.
patent No. 7,037,503, issued on May 2, 2006 and entitled, “Compounds and Methods for the Treatment and Prevention of Bacterial Infection”, along with any
reissue, renewal, reexamination, substitution or extension thereof. The PCT application patent was filed in May 2001 and will expire in May 2021 (barring
any patent term extensions).

18

 
 
 
 
Research and Development Expenditure

We  spent  approximately  $2.6  million  and  $6.3  million  in  the  years  ended  December  31,  2012  and  2011,  respectively,  on  research  and  development.  The
amounts we spent on research and development per product during the years ended December 31, 2012 and 2011 are set forth in “Management’s Discussion
and Analysis of Financial Condition and Results of Operations” in this Annual Report on Form 10-K.

Employees

As of December 31, 2012, we had 10 full-time employees, 4 of whom are MDs/PhDs.

Available Investor Information

We  file  electronically  with  the  Securities  and  Exchange  Commission  (“SEC”)  our  annual  reports  on  Form  10-K,  quarterly  reports  on  Form  10-Q,  current
reports  on  Form  8-K,  and  amendments  to  those  reports  filed  or  furnished  pursuant  to  Section  13(a)  of  15(d)  of  the  Securities  Exchange  Act  of  1934,  as
amended.  We  make  available  through  our  website,  free  of  charge,  copies  of  these  reports  as  soon  as  reasonably  practicable  after  we  electronically  file  or
furnish them to the SEC. Our website is located at http://www.soligenix.com. You can also request copies of such documents by contacting the company at
(609) 538-8200 or sending an email to info@soligenix.com.

Item 1A. Risk factors

You should carefully consider the risks, uncertainties and other factors described below before you decide whether to buy shares of our common stock. Any of
the factors could materially and adversely affect our business, financial condition, operating results and prospects and could negatively impact the market
price of our common stock. Below are the significant risks and uncertainties of which we are aware. Additional risks and uncertainties that we do not yet
know of, or that we currently think are immaterial, may also impair our business operations. You should also refer to the other information contained in this
Annual Report.

Risks Related to our Business

We  have  had  significant  losses  and  anticipate  future  losses;  if  additional  funding  cannot  be  obtained,  we  may  reduce  or  discontinue  our  product
development and commercialization efforts.

We have experienced significant losses since inception and have a significant accumulated deficit. We expect to incur additional operating losses in the future
and  expect  our  cumulative  losses  to  increase.  As  of  December  31,  2012,  we  have  approximately  $3.4  million  in  cash  available.  Based  on  our  projected
budgetary needs and funding from existing grants over the next two years, we expect to be able to maintain the current level of our operations into the second
quarter of 2014.

We have sufficient funds through our existing biodefense grant facilities from the NIAID, a division of the NIH, to finance our biodefense projects for the
next  several  years.  In  September  2009,  we  received  a  NIAID  grant  for  approximately  $9.4  million  for  the  development  of  our  biodefense  programs  and
recently received an additional SBIR grant from NIAD for $600,000. Our biodefense grants have an overhead component that allows us an agency-approved
percentage over our incurred costs. We estimate that the overhead component, which is approximately 21% above our subcontracted expenses, will finance
some fixed costs for direct employees working on the grants and other administrative costs.

19

 
 
 
 
 
 
 
 
Our products are positioned for or are currently in clinical trials, and we have not yet generated any significant revenues from sales or licensing of them. From
inception through December 2012, we have expended approximately $46.7 million developing our current product candidates for pre-clinical research and
development  and  clinical  trials,  and  we  currently  expect  to  spend  at  least  $3  million over  the  next  two  years  in  connection  with  the  development  of  our
therapeutic and vaccine products, licenses, employment agreements, and consulting agreements. Unless and until we are able to generate sales or licensing
revenue from one of our product candidates, we will require additional funding to meet these commitments, sustain our research and development efforts,
provide for future clinical trials, and continue our operations. There can be no assurance we can raise such funds. If additional funds are raised through the
issuance of equity securities, stockholders may experience dilution of their ownership interests, and the newly issued securities may have rights superior to
those of the common stock. If additional funds are raised by the issuance of debt, we may be subject to limitations on our operations. If we cannot raise such
additional funds, we may have to delay or stop some or all of our drug development programs.

If we are unsuccessful in developing our products, our ability to generate revenues will be significantly impaired.

To be profitable, our organization must, along with corporate partners and collaborators, successfully research, develop and commercialize our technologies
or  product  candidates.  Our  current  product  candidates  are  in  various  stages  of  clinical  and  pre-clinical  development  and  will  require  significant  further
funding, research, development, pre-clinical and/or clinical testing, regulatory approval and commercialization, and are subject to the risks of failure inherent
in the development of products based on innovative or novel technologies. Specifically, each of the following is possible with respect to any of our product
candidates:

●
●
●
●

we may not be able to maintain our current research and development schedules;
we may be unsuccessful in our efforts to secure profitable procurement contracts from the U.S. government or others for our biodefense products;
we may encounter problems in clinical trials; or
the technology or product may be found to be ineffective or unsafe.

If  any  of  the  risks  set  forth  above  occur,  or  if  we  are  unable  to  obtain  the  necessary  regulatory  approvals  as  discussed  below,  we  may  not  be  able  to
successfully develop our technologies and product candidates and our business will be seriously harmed. Furthermore, for reasons including those set forth
below, we may be unable to commercialize or receive royalties from the sale of any other technology we develop, even if it is shown to be effective, if:

●
●
●
●
●
●
●

it is not economical or the market for the product does not develop or diminishes;
we are not able to enter into arrangements or collaborations to manufacture and/or market the product;
the product is not eligible for third-party reimbursement from government or private insurers;
others hold proprietary rights that preclude us from commercializing the product;
we are not able to manufacture the product reliably;
others have brought to market similar or superior products; or
the product has undesirable or unintended side effects that prevent or limit its commercial use.

Our business is subject to extensive governmental regulation, which can be costly, time consuming and subjects us to unanticipated delays.

Our  business  is  subject  to  very  stringent  U.S.,  federal,  foreign,  state  and  local  government  laws  and  regulations,  including  the  Federal  Food,  Drug  and
Cosmetic  Act,  the  Environmental  Protection  Act,  the  Occupational  Safety  and  Health  Act,  and  state  and  local  counterparts  to  these  acts.  These  laws  and
regulations may be amended, additional laws and regulations may be enacted, and the policies of the FDA and other regulatory agencies may change.

20

 
 
 
 
The regulatory process applicable to our products requires pre-clinical and clinical testing of any product to establish its safety and efficacy. This testing can
take many years and require the expenditure of substantial capital and other resources. For example, our confirmatory Phase 3 clinical trial for orBec® (oral
BDP) in the treatment of GI GVHD was stopped on September 15, 2011 at the recommendation of an independent Data Safety Monitoring Board (“DSMB”)
as it was highly unlikely to achieve the predetermined end point of efficacy based on the interim results. Although no safety concerns were raised by the
DSMB, preliminary findings indicated that there were no significant differences between the orBec® group and placebo group for the primary endpoint or for
the pre-specified secondary endpoints. Given the outcome of the Phase 3 study, the Company terminated the development of orBec® for the treatment of acute
GI GVHD. Although we hope to obtain FDA approval for oral BDP in similar indications, such as treatment of chronic GI GVHD, treatment of pediatric
Crohn's disease acute radiation enteritis, and GI ARS, there can be no assurances that the FDA will ever approve oral BDP for market launch in any of these
indications.

We  may  not  be  able  to  obtain,  or  we  may  experience  difficulties  and  delays  in  obtaining,  necessary  domestic  and  foreign  governmental  clearances  and
approvals to market a product. Also, even if regulatory approval of a product is granted, that approval may entail limitations on the indicated uses for which
the product may be marketed.

Following any regulatory approval, a marketed product and its manufacturer are subject to continual regulatory review. Later discovery of problems with a
product or manufacturer may result in restrictions on such product or manufacturer. These restrictions may include withdrawal of the marketing approval for
the  product.  Furthermore,  the  advertising,  promotion  and  export,  among  other  things,  of  a  product  are  subject  to  extensive  regulation  by  governmental
authorities in the U.S. and other countries. If we fail to comply with applicable regulatory requirements, we may be subject to fines, suspension or withdrawal
of regulatory approvals, product recalls, seizure of products, operating restrictions and/or criminal prosecution.

There may be unforeseen challenges in developing our biodefense products.

For development of biodefense vaccines and therapeutics, the FDA has instituted policies that are expected to result in accelerated approval. This includes
approval for commercial use using the results of animal efficacy trials, rather than efficacy trials in humans. However, we will still have to establish that the
vaccines  we  are  developing  are  safe  in  humans  at  doses  that  are  correlated  with  the  beneficial  effect  in  animals.  Such  clinical  trials  will  also  have  to  be
completed  in  distinct  populations  that  are  subject  to  the  countermeasures;  for  instance,  the  very  young  and  the  very  old,  and  in  pregnant  women,  if  the
countermeasure is to be licensed for civilian use. Other agencies will have an influence over the risk benefit scenarios for deploying the countermeasures and
in establishing the number of doses utilized in the Strategic National Stockpile. We may not be able to sufficiently demonstrate the animal correlation to the
satisfaction of the FDA, as these correlates are difficult to establish and are often unclear. Invocation of the animal rule may raise issues of confidence in the
model systems even if the models have been validated. For many of the biological threats, the animal models are not available and we may have to develop
the animal models, a time-consuming research effort. There are few historical precedents, or recent precedents, for the development of new countermeasure
for bioterrorism agents. Despite the Animal Rule, the FDA may require large clinical trials to establish safety and immunogenicity before licensure and it may
require safety and immunogenicity trials in additional populations. Approval of biodefense products may be subject to post-marketing studies, and could be
restricted in use in only certain populations. The government’s biodefense priorities can change, which could adversely affect the commercial opportunity for
the products we are developing.

We will be dependent on government funding, which is inherently uncertain, for the success of our biodefense operations.

We are subject to risks specifically associated with operating in the biodefense industry, which is a new and unproven business area. We do not anticipate that
a significant commercial market will develop for our biodefense products. Because we anticipate that the principal potential purchasers of these products, as
well as potential sources of research and development funds, will be the U.S. government and governmental agencies, the success of our biodefense division
will  be  dependent  in  large  part  upon  government  spending  decisions.  The  funding  of  government  programs  is  dependent  on  budgetary  limitations,
congressional appropriations and administrative allotment of funds, all of which are inherently uncertain and may be affected by changes in U.S. government
policies resulting from various political and military developments. Our successful receipt of government funding is also dependent on our ability to adhere to
the terms and provisions of the original grant documents and other regulations.

21

 
 
 
 
If  the  parties  we  depend  on  for  supplying  our  drug  substance  raw  materials  and  certain  manufacturing-related  services  do  not  timely  supply  these
products and services, it may delay or impair our ability to develop, manufacture and market our products. We do not have or are anticipating having
internal manufacturing capabilities.

We  rely  on  suppliers  for  our  drug  substance  raw  materials  and  third  parties  for  certain  manufacturing-related  services  to  produce  material  that  meets
appropriate  content,  quality  and  stability  standards,  which  material  will  be  used  in  clinical  trials  of  our  products  and,  after  approval,  for  commercial
distribution. To succeed, clinical trials require adequate supplies of drug substance and drug product, which may be difficult or uneconomical to procure or
manufacture. We and our suppliers and vendors may not be able to (i) produce our drug substance or drug product to appropriate standards for use in clinical
studies, (ii) perform under any definitive manufacturing, supply or service agreements with us or (iii) remain in business for a sufficient time to successfully
produce  and  market  our  product  candidates.  If  we  do  not  maintain  important  manufacturing  and  service  relationships,  we  may  fail  to  find  a  replacement
supplier  or  required  vendor  or  develop  our  own  manufacturing  capabilities  which  could  delay  or  impair  our  ability  to  obtain  regulatory  approval  for  our
products and substantially increase our costs or deplete profit margins, if any. If we do find replacement manufacturers and vendors, we may not be able to
enter into agreements with them on terms and conditions favorable to us and, there could be a substantial delay before a new facility could be qualified and
registered with the FDA and foreign regulatory authorities.

The  manufacturing  of  our  products  is  a  highly  exacting  process,  and  if  we  or  one  of  our  materials  suppliers  encounter  problems  manufacturing  our
products, our business could suffer.

The  FDA  and  foreign  regulators  require  manufacturers  to  register  manufacturing  facilities.  The  FDA  and  foreign  regulators  also  inspect  these  facilities  to
confirm  compliance  with  current  cGMP  or  similar  requirements  that  the  FDA  or  foreign  regulators  establish.  We,  or  our  materials  suppliers,  may  face
manufacturing  or  quality  control  problems  causing  product  production  and  shipment  delays  or  a  situation  where  we  or  the  supplier  may  not  be  able  to
maintain compliance with the FDA’s cGMP requirements, or those of foreign regulators, necessary to continue manufacturing our drug substance. Any failure
to comply with cGMP requirements or other FDA or foreign regulatory requirements could adversely affect our clinical research activities and our ability to
market and develop our products.

We do not have sales and marketing experience and our lack of experience may restrict our success in commercializing some of our product candidates.

We  do  not  have  experience  in  marketing  or  selling  pharmaceutical  products  whether  in  the  U.S.  or  internationally.  To  obtain  the  expertise  necessary  to
successfully market and sell any of our products, the development of our own commercial infrastructure and/or collaborative commercial arrangements and
partnerships will be required. Our ability to make that investment and also execute our current operating plan is dependent on numerous factors, including, the
performance of third party collaborators with whom we may contract.

Our products, if approved, may not be commercially viable due to change in health care practice and third party reimbursement limitations.

Recent initiatives to reduce the federal deficit and to change health care delivery are increasing cost-containment efforts. We anticipate that Congress, state
legislatures and the private sector will continue to review and assess alternative benefits, controls on health care spending through limitations on the growth of
private health insurance premiums and Medicare and Medicaid spending, price controls on pharmaceuticals, and other fundamental changes to the health care
delivery  system.  Any  changes  of  this  type  could  negatively  impact  the  commercial  viability  of  our  products,  if  approved.  Our  ability  to  successfully
commercialize our product candidates, if they are approved, will depend in part on the extent to which appropriate reimbursement codes and authorized cost
reimbursement levels of these products and related treatment are obtained from governmental authorities, private health insurers and other organizations, such
as health maintenance organizations. In the absence of national Medicare coverage determination, local contractors that administer the Medicare program may
make  their  own  coverage  decisions.  Any  of  our  product  candidates,  if  approved  and  when  commercially  available,  may  not  be  included  within  the  then
current  Medicare  coverage  determination  or  the  coverage  determination  of  state  Medicaid  programs,  private  insurance  companies  or  other  health  care
providers. In addition, third-party payers are increasingly challenging the necessity and prices charged for medical products, treatments and services.

22

 
 
 
 
 
Federal and/or state health care reform initiatives could negatively affect our business.

The availability of reimbursement by governmental and other third-party payers affects the market for any pharmaceutical product. These third-party payers
continually attempt to contain or reduce the costs of healthcare. There have been a number of legislative and regulatory proposals to change the healthcare
system  and  further  proposals  are  likely.  Medicare's  policies  may  decrease  the  market  for  our  products.  Significant  uncertainty  exists  with  respect  to  the
reimbursement status of newly approved healthcare products.

In addition, third-party payers are increasingly challenging the price and cost-effectiveness of medical products and services. Once approved, we might not be
able  to  sell  our  products  profitably  or  recoup  the  value  of  our  investment  in  product  development  if  reimbursement  is  unavailable  or  limited  in  scope,
particularly for product candidates addressing small patient populations.

In addition, in some foreign countries, the proposed pricing for a drug must be approved before it may be lawfully marketed. The requirements governing
drug  pricing  vary  widely  from  country  to  country.  We  expect  that  there  will  continue  to  be  a  number  of  U.S.  federal  and  state  proposals  to  implement
governmental pricing controls. While we cannot predict whether such legislative or regulatory proposals will be adopted, the adoption of such proposals could
have a material adverse effect on our business, financial condition and profitability.

On  July  15,  2008,  the  Medicare  Improvements  for  Patients  and  Providers  Act  of  2008  became  law  with  a  number  of  Medicare  and  Medicaid  reforms  to
establish  a  bundled  Medicare  payment  rate  that  includes  services  and  drug/labs  that  are  currently  separately  billed.  Bundling  initiatives  that  have  been
implemented  in  other  healthcare  settings  have  occasionally  resulted  in  lower  utilization  of  services  that  had  not  previously  been  a  part  of  the  bundled
payment. We cannot speculate on the potential sales impact to orBec® based on the new rule.

We may not be able to retain rights licensed to us by third parties to commercialize key products or to develop the third party relationships we need to
develop, manufacture and market our products.

We currently rely on license agreements from the University of Texas Southwestern Medical Center, the University of British Columbia, Harvard University,
the University of Colorado, and George B. McDonald, MD for the rights to commercialize key product candidates. We may not be able to retain the rights
granted under these agreements or negotiate additional agreements on reasonable terms, if at all.

Furthermore,  we  currently  have  very  limited  product  development  capabilities  and  no  manufacturing,  marketing  or  sales  capabilities.  For  us  to  research,
develop  and  test  our  product  candidates,  we  need  to  contract  or  partner  with  outside  researchers,  in  most  cases  with  or  through  those  parties  that  did  the
original research and from whom we have licensed the technologies. If products are successfully developed and approved for commercialization, then we will
need to enter into additional collaboration and other agreements with third parties to manufacture and market our products. We may not be able to induce the
third parties to enter into these agreements, and, even if we are able to do so, the terms of these agreements may not be favorable to us. Our inability to enter
into  these  agreements  could  delay  or  preclude  the  development,  manufacture  and/or  marketing  of  some  of  our  product  candidates  or  could  significantly
increase  the  costs  of  doing  so.  In  the  future,  we  may  grant  to  our  development  partners  rights  to  license  and  commercialize  pharmaceutical  and  related
products developed under the agreements with them, and these rights may limit our flexibility in considering alternatives for the commercialization of these
products. Furthermore, third-party manufacturers or suppliers may not be able to meet our needs with respect to timing, quantity and quality for the products.

23

 
 
 
 
 
 
 
 
Additionally, if we do not enter into relationships with additional third parties for the marketing of our products, if and when they are approved and ready for
commercialization,  we  would  have  to  build  our  own  sales  force  or  enter  into  commercialization  agreements  with  other  companies.  Development  of  an
effective sales force in any part of the world would require significant financial resources, time and expertise. We may not be able to obtain the financing
necessary to establish a sales force in a timely or cost effective manner, if at all, and any sales force we are able to establish may not be capable of generating
demand for our product candidates, if they are approved.

We may suffer product and other liability claims; we maintain only limited product liability insurance, which may not be sufficient.

The clinical testing, manufacture and sale of our products involves an inherent risk that human subjects in clinical testing or consumers of our products may
suffer serious bodily injury or death due to side effects, allergic reactions or other unintended negative reactions to our products. As a result, product and other
liability claims may be brought against us. We currently have clinical trial and product liability insurance with limits of liability of $5 million, which may not
be  sufficient  to  cover  our  potential  liabilities.  Because  liability  insurance  is  expensive  and  difficult  to  obtain,  we  may  not  be  able  to  maintain  existing
insurance or obtain additional liability insurance on acceptable terms or with adequate coverage against potential liabilities. Furthermore, if any claims are
brought against us, even if we are fully covered by insurance, we may suffer harm such as adverse publicity.

We may not be able to compete successfully with our competitors in the biotechnology industry.

The  biotechnology  industry  is  intensely  competitive,  subject  to  rapid  change  and  sensitive  to  new  product  introductions  or  enhancements.  Most  of  our
existing  competitors  have  greater  financial  resources,  larger  technical  staffs,  and  larger  research  budgets  than  we  have,  as  well  as  greater  experience  in
developing products and conducting clinical trials. Our competition is particularly intense in the gastroenterology and transplant areas and is also intense in
the  therapeutic  area  of  inflammatory  bowel  diseases.  We  face  intense  competition  in  the  biodefense  area  from  various  public  and  private  companies  and
universities as well as governmental agencies, such as the U.S. Army, which may have their own proprietary technologies that may directly compete with our
technologies. In addition, there may be other companies that are currently developing competitive technologies and products or that may in the future develop
technologies and products that are comparable or superior to our technologies and products. We may not be able to compete successfully with our existing
and future competitors.

We  may  be  unable  to  commercialize  our  products  if  we  are  unable  to  protect  our  proprietary  rights,  and  we  may  be  liable  for  significant  costs  and
damages if we face a claim of intellectual property infringement by a third party.

Our success depends in part on our ability to obtain and maintain patents, protect trade secrets and operate without infringing upon the proprietary rights of
others.  In  the  absence  of  patent  and  trade  secret  protection,  competitors  may  adversely  affect  our  business  by  independently  developing  and  marketing
substantially equivalent or superior products and technology, possibly at lower prices. We could also incur substantial costs in litigation and suffer diversion
of attention of technical and management personnel if we are required to defend ourselves in intellectual property infringement suits brought by third parties,
with or without merit, or if we are required to initiate litigation against others to protect or assert our intellectual property rights. Moreover, any such litigation
may not be resolved in our favor.

Although we and our licensors have filed various patent applications covering the uses of our product candidates, patents may not be issued from the patent
applications already filed or from applications that we might file in the future. Moreover, the patent position of companies in the pharmaceutical industry
generally involves complex legal and factual questions, and recently has been the subject of much litigation. Any patents we have obtained, or may obtain in
the  future,  may  be  challenged,  invalidated  or  circumvented.  To  date,  no  consistent  policy  has  been  developed  in  the  U.S.  Patent  and  Trademark  Office
regarding the breadth of claims allowed in biotechnology patents.

24

 
 
 
 
In addition, because patent applications in the U.S. are maintained in secrecy until patents issue, and because publication of discoveries in the scientific or
patent  literature  often  lags  behind  actual  discoveries,  we  cannot  be  certain  that  we  and  our  licensors  are  the  first  creators  of  inventions  covered  by  any
licensed  patent  applications  or  patents  or  that  we  or  they  are  the  first  to  file.  The  Patent  and  Trademark  Office  may  commence  interference  proceedings
involving patents or patent applications, in which the question of first inventorship is contested. Accordingly, the patents owned or licensed to us may not be
valid or may not afford us protection against competitors with similar technology, and the patent applications licensed to us may not result in the issuance of
patents.

It is also possible that our patented technologies may infringe on patents or other rights owned by others, licenses to which may not be available to us. We
may not be successful in our efforts to obtain a license under such patent on terms favorable to us, if at all. We may have to alter our products or processes,
pay licensing fees or cease activities altogether because of patent rights of third parties.

In addition to the products for which we have patents or have filed patent applications, we rely upon unpatented proprietary technology and may not be able
to meaningfully protect our rights with regard to that unpatented proprietary technology. Furthermore, to the extent that consultants, key employees or other
third parties apply technological information developed by them or by others to any of our proposed projects, disputes may arise as to the proprietary rights to
this information, which may not be resolved in our favor.

Our business could be harmed if we fail to retain our current personnel or if they are unable to effectively run our business.

We  currently  have  only  10  employees  and  we  depend  upon  these  employees  to  manage  the  day-to-day  activities  of  our  business.  Because  we  have  such
limited personnel, the loss of any of them or our inability to attract and retain other qualified employees in a timely manner would likely have a negative
impact on our operations. We will not be successful if our management team cannot effectively manage and operate our business.

Instability and volatility in the financial markets could have a negative impact on our business, financial condition, results of operations, and cash flows.

During  recent  months,  there  has  been  substantial  volatility  in  financial  markets  due  at  least  in  part  to  the  uncertainty  with  regard  to  the  global  economic
environment and the potential impact of the so-called “fiscal cliff” arising from the combination of tax increases and automatic spending cuts scheduled to
take effect at the end of calendar 2012 and in early calendar 2013 in the U.S. In addition, there has been substantial uncertainty in the capital markets and
access to additional financing is uncertain. Moreover, customer spending habits may be adversely affected by current and future economic conditions. These
conditions could have an adverse effect on our industry and business, including our financial condition, results of operations, and cash flows.

To  the  extent  that  we  do  not  generate  sufficient  cash  from  operations,  we  may  need  to  issue  stock  or  incur  indebtedness  to  finance  our  plans  for  growth.
Recent turmoil in the credit markets and the potential impact on the liquidity of major financial institutions may have an adverse effect on our ability to fund
our  business  strategy  through  borrowings,  under  either  existing  or  newly  created  instruments  in  the  public  or  private  markets  on  terms  we  believe  to  be
reasonable, if at all.

25

 
 
 
 
 
Risks Related to our Common Stock 

Our common stock price is highly volatile.

The  market  price  of  our  common  stock,  like  that  of  many  other  research  and  development  public  pharmaceutical  and  biotechnology  companies,  has  been
highly volatile and may continue to be so in the future due to a wide variety of factors, including:

●
●

●
●
●
●
●
●
●
●
●

announcements by us or others of results of pre-clinical testing and clinical trials;
announcements of technological innovations, more important bio-threats or new commercial therapeutic products by us, our collaborative partners or
our present or potential competitors;
our quarterly operating results and performance;
developments or disputes concerning patents or other proprietary rights;
acquisitions;
litigation and government proceedings;
adverse legislation;
changes in government regulations;
our available working capital;
economic and other external factors; and
general market conditions.

Since January 1, 2012, the closing stock price (split adjusted) has fluctuated between a high of $2.05 per share to a low of $0.23 per share. As of February 19,
2013, our common stock closed at $1.88 per share. The fluctuation in the price of our common stock has sometimes been unrelated or disproportionate to our
operating performance. In addition, potential dilutive effects of future sales of shares of common stock by the Company, as well as potential sale of common
stock by the holders of warrants and options, could have an adverse effect on the market price of our shares.

Our common stock trades on the Over-the-Counter Bulletin Board.

Our common stock trades on the OTCQB securities market under the symbol “SNGX.” The OTCQB is a decentralized market regulated by the Financial
Industry  Regulatory  Authority  in  which  securities  are  traded  via  an  electronic  quotation  system  that  serves  more  than  3,000  companies.  On  the  OTCQB,
securities  are  traded  by  a  network  of  brokers  or  dealers  who  carry  inventories  of  securities  to  facilitate  the  buy  and  sell  orders  of  investors,  rather  than
providing the order matchmaking service seen in specialist exchanges. OTCQB securities include national, regional, and foreign equity issues. Companies
traded on the OTCQB must be current in their reports filed with the SEC and other regulatory authorities.

If our common stock is not listed on a national exchange or market, the trading market for our common stock may become illiquid. Our common stock is
subject to the penny stock rules of the SEC, which generally are applicable to equity securities with a price of less than $5.00 per share, other than securities
registered  on  certain  national  securities  exchanges  provided  that  current  price  and  volume  information  with  respect  to  transactions  in  such  securities  is
provided by the exchange or system. The penny stock rules require a broker-dealer, before a transaction in a penny stock not otherwise exempt from the rules,
to deliver a standardized risk disclosure document prepared by the SEC that provides information about penny stocks and the nature and level of risks in the
penny stock market. The broker-dealer also must provide the customer with bid and ask quotations for the penny stock, the compensation of the broker-dealer
and  its  salesperson  in  the  transaction  and  monthly  account  statements  showing  the  market  value  of  each  penny  stock  held  in  the  customer’s  account.  In
addition, the penny stock rules require that, before a transaction in a penny stock that is not otherwise exempt from such rules, the broker-dealer must make a
special written determination that the penny stock is a suitable investment for the purchaser and receive the purchaser’s written agreement to the transaction.
As a result of these requirements, our common stock could be priced at a lower price and our stockholders could find it more difficult to sell their shares.

26

 
 
 
 
Shareholders may suffer substantial dilution related to issued stock warrants and options.

We have a number of agreements or obligations that may result in dilution to investors. These include:

●

●

warrants to purchase a total of approximately 2,843,338 shares of our common stock at a current weighted average exercise price of approximately
$3.13; and
options to purchase approximately 1,457,724 shares of our common stock at a current weighted average exercise price of approximately $3.20.

To the extent that warrants or options are exercised, our stockholders will experience dilution and our stock price may decrease.

Anti-takeover provisions in our stockholder rights plan and under Delaware law could make a third party acquisition of the Company difficult.

Our stockholder rights plan contains provisions that could make it more difficult for a third party to acquire us, even if doing so might be deemed beneficial
by our stockholders. These provisions could limit the price that investors might be willing to pay in the future for shares of our common stock. We are also
subject  to  certain  provisions  of  Delaware  law  that  could  delay,  deter  or  prevent  a  change  in  control  of  the  Company.  The  rights  issued  pursuant  to  our
stockholder  rights  plan  will  become  exercisable  the  tenth  day  after  a  person  or  group  announces  acquisition  of  15%  or  more  of  our  common  stock  or
commences, or announces an intention to make, a tender or exchange offer the consummation of which would result in ownership by the person or group of
15% or more of our common stock. If the rights become exercisable, the holders of the rights (other than the person acquiring 15% or more of our common
stock) will be entitled to acquire, in exchange for the rights’ exercise price, shares of our common stock or shares of any company in which we are merged,
with a value equal to twice the rights’ exercise price.

Our shares of common stock are thinly traded, so stockholders may be unable to sell at or near ask prices or at all if they need to sell shares to raise
money or otherwise desire to liquidate their shares.

Our common stock has from time to time been “thinly-traded,” meaning that the number of persons interested in purchasing our common stock at or near ask
prices at any given time may be relatively small or non-existent. This situation is attributable to a number of factors, including the fact that we are a small
company that is relatively unknown to stock analysts, stock brokers, institutional investors and others in the investment community that generate or influence
sales volume, and that even if we came to the attention of such persons, they tend to be risk-averse and would be reluctant to follow an unproven company
such as ours or purchase or recommend the purchase of our shares until such time as we become more seasoned and viable. As a consequence, there may be
periods of several days or more when trading activity in our shares is minimal or non-existent, as compared to a seasoned issuer which has a large and steady
volume of trading activity that will generally support continuous sales without an adverse effect on share price. We cannot give stockholders any assurance
that a broader or more active public trading market for our common shares will develop or be sustained, or that current trading levels will be sustained.

Item 1B. Unresolved Staff Comments

None.

Item 2. Properties

We  currently  lease  approximately  5,250  square  feet  of  office  space  at  29  Emmons  Drive,  Suite  C-10,  Princeton,  New  Jersey  08540.  This  office  space
currently serves as our corporate headquarters. On February 7, 2012, we entered into a lease agreement through March 31, 2015 for our existing office space.
The rent for the first 12 months is approximately $8,000 per month, or approximately $18.25 per square foot on an annualized basis. This rent increases to
approximately $8,310 per month, or approximately $19.00 per square foot on an annualized basis, for the remaining 24 months. Our office space is sufficient
to satisfy our current needs.

Item 3. Legal Proceedings

From time to time, we are a party to claims and legal proceedings arising in the ordinary course of business. Our management evaluates our exposure to these
claims and proceedings individually and in the aggregate and allocates additional monies for potential losses on such litigation if it is possible to estimate the
amount of loss and if the amount of the loss is probable.

27

 
 
 
 
 
 
Item 5. Market for Registrant’s Common Equity, Related Stockholder Matters and Issuer Purchases of Equity Securities

Our common stock is quoted on the OTCQB under the symbol "SNGX." The following table sets forth, as adjusted for the reverse stock split of 1-for-20
effective February 1, 2012, for the periods indicated, the high and low sales prices per share of our common stock as reported by the OTCQB.

PART II

Year Ended December 31, 2011:

Period

First Quarter
Second Quarter
Third Quarter
Fourth Quarter

Year Ended December 31, 2012:

First Quarter
Second Quarter
Third Quarter
Fourth Quarter

Price Range

High

Low

  $
  $
  $
  $

  $
  $
  $
  $

4.40    $
5.20    $
6.80    $
1.00    $

1.01    $
0.53    $
0.55    $
0.77    $

3.20 
3.60 
0.80 
0.60 

0.44 
0.23 
0.26 
0.38 

As  of  February  19,  2013,  the  last  reported  price  of  our  common  stock  quoted  on  the  OTCQB  was  $1.88  per  share.  The  OTCQB  prices  set  forth  above
represent inter-dealer quotations, without adjustment for retail mark-up, mark-down or commission, and may not represent the prices of actual transactions.
As of February 19, 2013, we have approximately 940 stockholders of record of our common stock.

Dividends

We have never declared nor paid any cash dividends, and currently intend to retain all our cash and any earnings for use in our business and, therefore, do not
anticipate  paying  any  cash  dividends  in  the  foreseeable  future.  Any  future  determination  to  pay  cash  dividends  will  be  at  the  discretion  of  the  Board  of
Directors and will be dependent upon our consolidated financial condition, results of operations, capital requirements and such other factors as the Board of
Directors deems relevant.

Item 6. Selected Financial Data

Not applicable.

Item 7. Management’s Discussion and Analysis of Financial Condition and Results of Operations.

Cautionary Note Regarding Forward-Looking Statements

This Annual Report on Form 10-K contains forward-looking statements that reflect our current expectations about our future results, performance, prospects
and  opportunities.  These  forward-looking  statements  are  subject  to  significant  risks,  uncertainties,  and  other  factors,  including  those  identified  in  “Risk
Factors” above, which may cause actual results to differ materially from those expressed in, or implied by, any forward-looking statements. The forward-
looking statements within this Form 10-K may be identified by words such as “believes,” “anticipates,” “expects,” “intends,” “may,” “would,” “will” and
other  similar  expressions.  However,  these  words  are  not  the  exclusive  means  of  identifying  these  statements.  In  addition,  any  statements  that  refer  to
expectations,  projections  or  other  characterizations  of  future  events  or  circumstances  are  forward-looking  statements.  Except  as  expressly  required  by  the
federal securities laws, we undertake no obligation to publicly update or revise any forward-looking statements to reflect events or circumstances occurring
subsequent to the filing of this Form 10-K with the SEC or for any other reason. You should carefully review and consider the various disclosures we make in
this report and our other reports filed with the SEC that attempt to advise interested parties of the risks, uncertainties and other factors that may affect our
business.

28

 
 
 
 
 
 
   
 
 
 
 
 
 
Our Business Overview

Soligenix, Inc. was incorporated in Delaware in 1987. We are a development stage biopharmaceutical company that is focused on developing products to treat
serious gastrointestinal diseases where there remains an unmet medical need, as well as developing several biodefense vaccines and therapeutics. We maintain
two active business segments: BioTherapeutics and Vaccines/BioDefense.

Our BioTherapeutics business segment intends to develop oral beclomethasone dipropionate (“oral BDP”) indications such as pediatric Crohn’s disease and
acute  radiation  enteritis.  Our  Vaccines/BioDefense  business  segment  includes  active  development  programs  for  RiVaxTM,  our  ricin  toxin  vaccine,  and
VeloThrax™, our anthrax vaccine, and OrbeShield™, our gastrointestinal acute radiation syndrome (“GI ARS”) therapeutic. The advanced development of
our vaccine programs is currently supported by our heat stabilization technology, known as ThermoVax™, under existing and on-going government grant
funding.

An outline of our business strategy follows:

● Initiate a Phase 1/2 clinical trial of oral BDP, known as SGX203 for the treatment of pediatric Crohn’s disease;
● Initiate a Phase 2 clinical trial of SGX942 for the treatment of oral mucositis in head and neck cancer;
● Evaluate  the  effectiveness  of  oral  BDP  in  other  therapeutic  indications  involving  inflammatory  conditions  of  the  gastrointestinal  (“GI”)  tract  such  as

prevention of acute radiation enteritis, prevention of acute radiation syndrome, and treatment of chronic graft-versus-host disease (“GVHD”);

● Develop RiVax™ and VeloThrax™ in combination with our proprietary vaccine heat stabilization technology, known as ThermoVax™, to develop new

heat stable vaccines in biodefense and infectious diseases with the potential to collaborate and/or partner with other companies in these areas;

● Continue  to  apply  for  and  secure  additional  government  funding  for  each  of  our  BioTherapeutics  and  Vaccines/BioDefense  programs  through  grants,

contracts and/or procurements; and

● Explore other business development and merger/acquisition strategies.

Critical Accounting Policies

Our  discussion  and  analysis  of  our  financial  condition  and  results  of  operations  are  based  upon  our  consolidated  financial  statements,  which  have  been
prepared in accordance with accounting principles generally accepted in the U.S. The preparation of these financial statements requires us to make estimates
and judgments that affect the reported amounts of assets, liabilities and expenses, and related disclosure of contingent assets and liabilities. We evaluate these
estimates and judgments on an on-going basis.

Intangible Assets

One of the most significant estimates or judgments that we make is whether to capitalize or expense patent and license costs. We make this judgment based on
whether  the  technology  has  alternative  future  uses,  as  defined  in  Financial  Accounting  Standards  Board  (“FASB”)  Accounting  Standards  Codification
(“ASC”) 730, Research and Development. Based on this consideration, we capitalized payments made to legal firms that are engaged in filing and protecting
rights to intellectual property rights for our current products in both the domestic and international markets. We believe that patent rights are one of our most
valuable  assets.  Patents  and  patent  applications  are  key  components  of  intellectual  property,  especially  in  the  early  stage  of  product  development,  as  their
purchase and maintenance gives us access to key product development rights from our academic and industrial partners. These rights can also be sold or sub-
licensed  as  part  of  our  strategy  to  partner  our  products  at  each  stage  of  development  as  the  intangible  assets  have  alternative  future  use.  The  legal  costs
incurred for these patents consist of work associated with filing new patents designed to protect, preserve, maintain and perhaps extending the lives of the
patents. Therefore, our policy is to capitalize these costs and amortize intangibles over their expected useful life, generally a period of 11 to 16 years.

29

 
 
 
 
 
These intangible assets are reviewed for impairment whenever events or changes in circumstances indicate that the carrying amount may not be recoverable
or if the underlying program is no longer being pursued. If the sum of the expected undiscounted cash flows is less than the carrying value of the related asset
or group of assets, a loss is recognized for the difference between the fair value and carrying value of the related asset or group of assets.

Research and Development Costs

Research  and  development  costs  are  charged  to  expense  when  incurred  in  accordance  with  FASB  ASC  730,  Research  and  Development.  Research  and
development  includes  costs  such  as  clinical  trial  expenses,  contracted  research  and  license  agreement  fees  with  no  alternative  future  use,  supplies  and
materials,  salaries  stock  based  compensation,  employee  benefits,  equipment  depreciation  and  allocation  of  various  corporate  costs.  Purchased  in-process
research and development expense represents the value assigned or paid for acquired research and development for which there is no alternative future use as
of the date of acquisition.

Revenue Recognition

Principally  our  revenues  are  generated  from  National  Institutes  of  Health  (“NIH”)  grants  and  revenues  from  licensing  activities  and  the  achievement  of
licensing  milestones  (in  prior  periods).  Recording  of  revenue  is  applied  in  accordance  with  FASB  ASC  605,  Revenue  Recognition,  ASC  605-25  and/or
Accounting  Standard  Update,  ASU,  2009-13,  Revenue  Recognition  –  Multiple  Element  Arrangements.  The  revenue  from  NIH  grants  is  based  upon
subcontractor costs and internal costs incurred that are specifically covered by the grant, plus a facilities and administrative rate that provides funding for
overhead expenses. These revenues are recognized when expenses have been incurred by subcontractors or when we incur internal expenses that are related to
the grant. Licensing and associated milestone revenues are recorded when earned.

Accounting for Warrants

We considered FASB ASC 815, Evaluating Whether an Instrument is Considered Indexed to an Entity’s Own Stock, which provides guidance for determining
whether an equity-linked financial instrument (or embedded feature) issued by an entity is indexed to the entity’s stock, and therefore, qualifying for the first
part  of  the  scope  exception  in  paragraph  815-10-15.  We  evaluated  the  warrants’  provisions  and  determined  that  they  were  indexed  to  our  own  stock  and
therefore to be accounted for as an equity instrument for 2012 and 2011.

Stock-Based Compensation

From time to time, we issue restricted shares of common stock to vendors and consultants as compensation for services performed. These shares are typically
issued as restricted stock, unless issued to non-affiliates under the 2005 Equity Incentive Plan, where the stock may be issued as unrestricted. The restricted
stock can only have the restrictive legend removed if the shares underlying the certificate are sold pursuant to an effective registration statement, which we
must file and have approved by the SEC, if the shares underlying the certificate are sold pursuant to Rule 144, provided certain conditions are satisfied, or if
the shares are sold pursuant to another exemption from the registration requirements of the Securities Act of 1933, as amended (the “Securities Act”).

We determine stock-based compensation expense for options, warrants and shares of common stock granted to non-employees in accordance with FASB ASC
718, Stock Compensation, and FASB ASC 505-50, Equity-Based Payments to Non-Employees, and represents the fair value of the consideration received, or
the fair value of the equity instruments issued, whichever may be more reliably measured. For options that vest over future periods, the fair value of options
granted  to  non-employees  is  amortized  as  the  options  vest.  The  option’s  price  is  remeasured  using  the  Black-Scholes  model  at  the  end  of  each  quarterly
reporting period. Stock-based compensation expense recognized during the period is based on the value of the portion of share-based payment awards that is
ultimately expected to vest during the period.

30

 
 
 
 
Material Changes in Results of Operations

Year Ended December 31, 2012 Compared to 2011

For the year ended December 31, 2012, we had a net loss of $4,163,008 as compared to a net loss of $2,378,594 for the prior year, representing an increased
loss  of  $1,784,414  or  75%.  This  increase  in  the  net  loss  is  attributable  to  a  decrease  in  revenue  of  $4,518,202  primarily  related  to  receipt  in  2011  of
$5,000,000 from Sigma-Tau Pharmaceuticals, Inc. (“Sigma-Tau”) as payment on the execution of our expanded license agreement into the European territory
(the “Sigma-Tau Agreement”), decreased expenses in research and development related to the conduct of the confirmatory Phase 3 clinical trial of orBec® for
the  treatment  of  acute  GI  GVHD  in  2011  and  an  increase  in  general  and  administrative  expenses  of  $390,799  related  to  professional  fees  and  non-cash
expenses for replacing previously issued warrants to Sigma-Tau upon reacquiring the rights to orBec® and accelerating the vesting of certain stock options
issued to a former employee.

For the year ended December 31, 2012, revenues and associated costs relate to NIH grants awarded in support of the development of ThermoVax™, GI-ARS
and orBec® . For the year ended December 31, 2012, we had revenues of $3,144,620 as compared to $7,662,822 for the prior year, representing a decrease of
$4,518,202.  The  decrease  in  revenues  were  a  result  of  $5,000,000  received  in  2011  relating  to  the  Sigma-Tau  Agreement  offset  by  increases  in  NIH
drawdowns and the associated development work underlying them. Grant revenues increased by $481,798 or 18%, relating to ThermoVax™ and recently
awarded SBIR grants for GI-ARS and Chronic GI GVHD.

We  incurred  costs  related  to  grant  revenue  in  the  year  ended  December  31,  2012  and  2011  of  $2,593,075  and  $2,108,228,  respectively,  representing  an
increase of $484,847, or 23%. These costs primarily relate to payments made to subcontractors in connection with research performed pursuant to grants. The
cost changes are due to work performed on the NIH grant revenues discussed above.

Our gross profit for the year ended December 31, 2012 was $551,545 as compared to $5,554,594 for the prior year, representing a decrease of $5,003,049.
This decrease is due primarily to the Sigma-Tau Agreement and a 2011 reimbursement of certain period salary costs for which there is no current period cost.

Research and development spending decreased by $3,663,375 or 58%, to $2,609,241 for the year ended December 31, 2012 as compared to $6,272,616 for
the prior year. This decrease is primarily related to expenses incurred in 2011for the confirmatory Phase 3 clinical trial of orBec® for the treatment of acute GI
GVHD.

General and administrative expenses increased by $390,799, or 17%, to $2,632,972 for the year ended December 31, 2012, as compared to $2,242,173 for the
prior year. This increase related to professional fees and non-cash expenses for replacing previously issued warrants to Sigma-Tau upon reacquiring the rights
to orBec® and accelerating the vesting of certain stock options issued to a former employee. These non-cash charges totaled $268,128.

Net interest income for the year ended December 31, 2012 was $6,202 as compared to $7,444 for the prior year, representing a decrease of $1,242, or 17%.
This decrease was due to reductions in our cash position during 2012.

During  the  year  ended  December  31,  2012,  in  accordance  with  the  State  of  New  Jersey’s  Technology  Business  Tax  Certificate  Program,  which  allowed
certain high technology and biotechnology companies to sell unused net operating loss (“NOL”) carryforwards to other New Jersey-based corporate taxpayers
based in New Jersey, we sold New Jersey NOL carryforwards, resulting in the recognition of $521,458 of income tax benefit, net of transaction costs. There
can be no assurance as to the continuation or magnitude of this program in future years.

31

 
 
 
 
 
 
 
Business Segments

We maintain two active business segments for the year ended December 31, 2012 and December 31, 2011: Vaccines/BioDefense and BioTherapeutics.

Revenues for the Vaccines/BioDefense business segment for the year ended December 31, 2012 were $2,919,677 as compared to $2,010,234 for the year
ended December 31, 2011, representing an increase of 909,443 or 45%. This increase is attributable to NIH grant revenue for work towards our ThermoVax™
vaccine technology and GI-ARS. Revenues for the BioTherapeutics business segment for the year ended December 31, 2012 were $224,943 as compared to
$5,652,588 for the year ended December 31, 2011, representing a decrease of $5,427,645. This significant decrease is primarily related to the $5,000,000
received for the Sigma-Tau Agreement and a decrease in NIH grant revenue related to the orBec® Orphan grant.

Loss from operations for the Vaccines/BioDefense business segment for the year ended December 31, 2012 was $33,636 as compared to $154,395 for the
year ended December 31, 2011, representing a decreased loss of $120,759. This decrease is primarily attributed to NIH grant revenue for work towards our
ThermoVax™ vaccine technology and GI-ARS. Loss from operations for the BioTherapeutics business segment for the year ended December 31, 2012 was
$2,203,721 as compared to $1,278,156 for the year ended December 31, 2011, representing a increase of $925,565. This increased loss is due to a significant
decrease in research and development spending and the receipt in 2011 of $5,000,000 relating to the Sigma-Tau Agreement.

Amortization and depreciation expense for the Vaccines/BioDefense business segment for the year ended December 31, 2012 was $38,589 as compared to
$42,640 for the year ended December 31, 2011, representing a decrease of $4,051, or 10%. Amortization and depreciation expense for the BioTherapeutics
business  segment  for  the  year  ended  December  31,  2012  was  $190,003  as  compared  to  $181,213  for  the  year  ended  December  31,  2011,  representing  an
increase of $8,790, or 5%.

Financial Condition and Liquidity

Cash and Working Capital

As of December 31, 2012, we had cash and cash equivalents of $3,356,380 as compared to $5,996,668 as of December 31, 2011, representing a decrease of
$2,640,228 or 44%. As of December 31, 2012, we had working capital of $2,682,383 as compared to working capital of $5,696,444 as of December 31, 2011,
representing a decrease of $3,014,061 or 53%. The decrease in working capital was the result of the cash used in operating and investing activities over the
period. For the year ended December 31, 2012, our cash used in operating activities was $2,635,533, as compared to $1,951,738 for the same period in 2011.
Excluding the proceeds of $5,000,000 received from Sigma-Tau for the European territory license in the third quarter of 2011, for the year ended December
31,  2012,  we  experienced  a  decrease  in  cash  used  in  operating  activities  of  $4,316,205.  This  decrease  was  attributable  to  the  decrease  in  research  and
development expenses related to the 2011 orBec® Phase 3 clinical trial.

Based on our current rate of cash outflows, cash on hand, proceeds from our grant-funded programs, reductions in headcount and expected proceeds from the
State  of  New  Jersey  Technology  Business  Tax  Certificate  Transfer  Program,  management  believes  that  our  current  cash  will  be  sufficient  to  meet  our
anticipated cash needs for working capital and capital expenditures into the second quarter of 2014.

Our plans with respect to our liquidity management include, but are not limited to, the following:

● We have instituted a cost reduction plan which has reduced headcount and will continue to reduce costs wherever possible.
● We have approximately $3.8 million in active grant funding still available to support our associated research programs in 2014 and beyond. We plan to

submit additional grant applications for further support of these programs with various funding agencies.

32

 
 
 
 
 
 
 
● We have continued to use equity instruments to provide a portion of the compensation due to vendors and collaboration partners and expect to continue to

do so for the foreseeable future.

● We will pursue NOL sales in the State of New Jersey, pursuant to its Technology Business Tax Certificate Transfer Program. Based on the receipt of
$521,458 in proceeds from the sale of NJ NOL in 2012, we expect to participate in this program during 2013 and beyond as the program is available; and
● We may seek additional capital in the private and/or public equity markets to continue our operations, respond to competitive pressures, develop new
products and services, and to support new strategic partnerships. We are currently evaluating additional equity financing opportunities and may execute
them  when  appropriate.  However,  there  can  be  no  assurances  that  we  can  consummate  such  a  transaction,  or  consummate  a  transaction  at  favorable
pricing.

Reverse Stock Split

On February 1, 2012, we completed a reverse stock split of its issued and outstanding shares of common stock at a ratio of 1-for-20, whereby, every 20 shares
of  our  common  stock  was  exchanged  for  one  share  of  our  common  stock.  Our  common  stock  began  trading  on  the  OTCQB  on  a  reverse  split  basis  on
February 2, 2012. All share and per share data have been restated to reflect this reverse stock split.

Expenditures

Under our budget and based upon our existing product development agreements and license agreements pursuant to letters of intent and option agreements,
we  expect  our  total  research  and  development  expenditures  for  the  next  12  months  to  be  approximately  $3.8  million  before  any  grant  reimbursements,  of
which $1.2 million relates to the BioTherapeutics business and $2.6 million relates to the Vaccines/BioDefense business. We anticipate grant revenues in the
next  12  months  of  approximately  $3.0  million  to  offset  research  and  development  expenses,  primarily  for  the  development  of  our  ThermoVax™  vaccine
technology.

The table below details our costs for research and development by program and amounts reimbursed for the years ended December 31, 2012 and 2011:

Research & Development Expenses

orBec®
RiVax™ & ThermoVax™  Vaccines
SGX94/Other
Total

Reimbursed under NIH Grants

orBec®
RiVax™ & ThermoVax™ Vaccines

Total

Grand Total

Contractual Obligations

2012 

2011 

 $

 $

 $

 $
 $

903,820 
1,307,589 
397,832 
2,609,241 

209,152 
2,383,923 
 2,593,075 
 5,202,316 

 $

 $

 $

 $
 $

3,935,737 
1,831,593 
505,286 
6,272,616 

616,783 
1,491,445 
 2,108,228 
 8,380,844 

We  have  commitments  of  approximately  $425,000  at  December  31,  2012  for  several  licensing  agreements  with  consultants  and  universities,  which  upon
clinical or commercialization success may require the payment of milestones and/or royalties if and when achieved. However, there can be no assurance that
clinical or commercialization success will occur.

On  February  7,  2012,  we  entered  into  a  lease  agreement  through  March  31,  2015  for  our  existing  office  space.  The  rent  for  the  first  12  months  is
approximately $8,000 per month, or approximately $18.25 per square foot. This rent increases to approximately $8,310 per month, or approximately $19.00
per square foot on, for the remaining 24 months. Rent expense is recognized on a straight-line basis.

33

 
 
 
 
 
   
     
 
  
  
  
  
 
   
      
  
   
      
  
  
  
 
 
In February 2007, our Board of Directors authorized the issuance of the following number of shares to each of Dr. Schaber and Dr. Brey immediately prior to
completion of a transaction, or series or a combination of related transactions negotiated by our Board of Directors whereby, directly or indirectly, a majority
of our capital stock or a majority of our assets are transferred from us and/or our stockholders to a third party: 50,000 common shares to Dr. Schaber; and
10,000 common shares to Dr. Brey. The amended agreement with Dr. Schaber includes our obligation to issue shares if such event occurs. 

Employees with employment contracts have severance agreements that will provide separation benefits from the Company if they are involuntarily separated
from employment. On February 15, 2012, Mr. Myrianthopoulos’ employment agreement was terminated. However, he continues to serve the Company as a
consultant on business development and other related matters.

As a result of the above agreements, we have future contractual obligations over the next five years as follows:

Year
2013
2014
2015
2016
2017
Total

Research and
Development   
100,000   $
100,000    
75,000    
75,000    
75,000    
425,000   $

Property and
Other Leases   
105,000   $
101,200    
25,000    
-    
-    
231,200   $

 $

 $

Total 
205,000 
201,200 
100,000 
75,000 
75,000 
656,200 

Item 8. Financial Statements and Supplementary Data

The information required by this Item 8 is contained on pages F-1 through F-22 of this Annual Report on Form 10-K and is incorporated herein by reference.

Item 9. Changes in and Disagreements with Accountants on Accounting and Financial Disclosure

None.

Item 9A. Controls and Procedures

Evaluation of Disclosure Controls and Procedures

Disclosure controls and procedures are the Company’s controls and other procedures that are designed to ensure that information
required to be disclosed by us in the reports that we file or submit under the Securities Exchange Act of 1934, as amended (the
“Exchange Act”) is recorded, processed, summarized and reported within the time periods specified in the SEC’s rules and forms.
Disclosure  controls  and  procedures  include,  without  limitation,  controls  and  procedures  designed  to  ensure  that  information
required  to  be  disclosed  by  us  in  the  reports  that  we  file  under  the  Exchange  Act  is  accumulated  and  communicated  to  our
management,  including  our  principal  executive  officer  and  principal  financial  officer,  as  appropriate,  to  allow  timely  decisions
regarding  required  disclosure.  Our  management  recognizes  that  any  controls  and  procedures,  no  matter  how  well  designed  and
operated, can only provide reasonable assurance of achieving their objectives and management necessarily applies its judgment in
evaluating the possible controls and procedures.

Our  management  has  evaluated,  with  the  participation  of  our  principal  executive  officer  and  principal  financial  officer,  the
effectiveness  of  our  disclosure  controls  and  procedures  (as  such  term  is  defined  in  Rules  13a-15(e)  and  15d-15(e)  under  the
Exchange  Act)  as  of  the  end  of  the  period  covered  by  this  report.  Based  upon  that  evaluation,  our  management,  including  our
principal executive officer and principal financial officer, has concluded that, as of the end of the period covered by this report, the
Company’s disclosure controls and procedures were effective at the reasonable assurance level.

34

 
 
 
 
  
  
  
  
 
 
Management’s Annual Report on Internal Control over Financial Reporting

Company management is responsible for establishing and maintaining adequate internal control over financial reporting. Internal
control over financial reporting is a process designed by, or under the supervision of, our principal executive and principal financial
officers  and  effected  by  the  Company’s  Board  of  Directors,  management  and  other  personnel  to  provide  reasonable  assurance
regarding the reliability of financial reporting and the preparation of financial statements for external purposes in accordance with
generally accepted accounting principles and includes those policies and procedures that:

  ● pertain  to  the  maintenance  of  records  that  in  reasonable  detail  accurately  and  fairly  reflect  the  transactions  and  dispositions  of  the  assets  of  the

Company;

  ● provide reasonable assurance that transactions are recorded as necessary to permit preparation of financial statements in accordance with generally
accepted  accounting  principles,  and  that  receipts  and  expenditures  of  the  Company  are  being  made  only  in  accordance  with  authorizations  of
management and directors of the Company; and

  ● provide reasonable assurance regarding prevention or timely detection of unauthorized acquisition, use or disposition of the Company’s assets that

could have a material effect on the financial statements.

Because of inherent limitations, internal control over financial reporting may not prevent or detect misstatements. Projections of
any evaluation of effectiveness to future periods are subject to the risks that controls may become inadequate because of changes in
conditions, or that the degree of compliance with the policies or procedures may deteriorate.

Management  assessed  the  effectiveness  of  the  Company’s  internal  control  over  financial  reporting  as  of  December  31,  2012.  In
making this assessment, management used the criteria set forth by the Committee of Sponsoring Organizations of the Treadway
Commission (“COSO”) in Internal Control-Integrated Framework.

Based on our assessment, management has concluded that, as of December 31, 2012, the Company’s internal control over financial
reporting is effective.

This report does not include an attestation report of our registered public accounting firm regarding internal control over financial
reporting. Management’s report was not subject to attestation by our registered public accounting firm pursuant to temporary rules
of the SEC that permit us to provide only management’s report in this report.

Changes in Internal Control over Financial Reporting

There were no changes in the Company’s internal control over financial reporting identified in connection with the evaluation of
such internal control that occurred during the Company’s last fiscal quarter that have materially affected, or are reasonably likely to
materially affect, the Company’s internal control over financial reporting.

On February 15, 2012, the employment agreement of Mr. Myrianthopoulos, Chief Financial Officer and Senior Vice-President was
terminated and Mr. Joseph M. Warusz was appointed the Acting Chief Financial Officer.

Item 9B. Other Information

None.

35

 
 
 
 
Item 10. Directors, Executive Officers and Corporate Governance

PART III

The table below contains information regarding the current members of the Board of Directors and executive officers. The ages of individuals are provided as
of February 22, 2013:

Name

Christopher J. Schaber, PhD
Keith L. Brownlie, CPA
Gregg A. Lapointe, CPA
Robert J. Rubin, MD
Jerome Zeldis, MD, PhD
Robert N. Brey, PhD
Kevin J. Horgan, MD
Joseph M. Warusz, CPA

Age
46
60
54
67
62
62
53
56

Position

  Chairman of the Board, Chief Executive Officer and President
  Director
  Director
  Director
  Director
  Chief Scientific Officer and Senior Vice President
  Chief Medical Officer and Senior Vice President
  Vice President of Finance, Acting Chief Financial Officer and Corporate Secretary

Christopher J. Schaber, PhD has over 23 years of experience in the pharmaceutical and biotechnology industry. Dr. Schaber has been our President
and Chief Executive Officer and a director since August 2006. He was appointed Chairman of the Board on October 8, 2009. He also serves on the board of
directors  of  the  Biotechnology  Council  of  New  Jersey  (“BioNJ”)  since  January  2009,  and  is  a  member  of  the  corporate  councils  of  both  the  National
Organization for Rare Diseases (“NORD”) and the American Society for Blood and Marrow Transplantation (“ASBMT”) since October 2009 and July 2009,
respectively.  Prior  to  joining  Soligenix,  Dr.  Schaber  served  from  1998  to  2006  as  Executive  Vice  President  and  Chief  Operating  Officer  of  Discovery
Laboratories, Inc., where he was responsible for overall pipeline development and key areas of commercial operations, including regulatory affairs, quality
control and assurance, manufacturing and distribution, pre-clinical and clinical research, and medical affairs, as well as coordination of commercial launch
preparation activities. During his tenure at Discovery Laboratories, Inc., Dr. Schaber played a significant role in raising over $150 million through both public
offerings  and  private  placements.  From  1996  to  1998,  Dr.  Schaber  was  a  co-founder  of  Acute  Therapeutics,  Inc.,  and  served  as  its  Vice  President  of
Regulatory Compliance and Drug Development. From 1994 to 1996, Dr. Schaber was employed by Ohmeda PPD, Inc., as Worldwide Director of Regulatory
Affairs and Operations. From 1989 to 1994, Dr. Schaber held a variety of regulatory, development and operations positions with The Liposome Company,
Inc., and Elkins-Sinn Inc., a division of Wyeth-Ayerst Laboratories. Dr. Schaber received his BA degree from Western Maryland College, his MS degree in
Pharmaceutics from Temple University School of Pharmacy and his PhD degree in Pharmaceutical Sciences from the Union Graduate School. Dr. Schaber
was  selected  to  serve  as  a  member  of  our  Board  of  Directors  because  of  his  extensive  experience  in  drug  development  and  pharmaceutical  operations,
including his experience as an executive senior officer with our Company and Discovery Laboratories, Inc., and as a member of the board of directors of
BioNJ; because of his proven ability to raise funds and provide access to capital; and because of his advanced degrees in science and business.

Keith L. Brownlie, CPA has been a director since June 2011. Mr. Brownlie currently serves as a member of the Board of Directors of Epicept Corporation, a
publicly traded, specialty pharmaceutical company focused on the clinical development and commercialization of pharmaceutical products for the treatment
of  cancer  and  pain,  a  position  he  has  held  since  April  2011.  Mr.  Brownlie  also  serves  on  the  Board  of  Directors  of  RXi  Pharmaceuticals  Corporation,  a
publicly traded biotechnology company involved in the research and development of RNAi products for the diagnosis, prevention and treatment of human
diseases, a position he has held since June 2012. From 1974 to 2010, Mr. Brownlie worked with the accounting firm of Ernst & Young LLP where he served
as audit partner for numerous public companies and was the Life Sciences Industry Leader for the New York metro area where he was involved with over 100
public and private financings and M&A transactions. Mr. Brownlie received a BS in Accounting from Lehigh University and is a Certified Public Accountant
in the state of New Jersey. Mr. Brownlie co-founded the New Jersey Entrepreneur of the Year Program and was Vice President and Trustee of the New Jersey
Society of CPAs. In addition, he served as accounting advisor to the board of the Biotechnology Council of New Jersey. Mr. Brownlie was selected to serve as
a member of our Board of Directors because of his vast experience as an audit partner for numerous public companies and as a director of a publicly traded
specialty pharmaceutical and biotechnology companies.

36

 
 
 
 
 
 
 
 
 
 
 
 
 
 
Gregg  Lapointe,  CPA  has  been  a  director  since  March  2009.  Mr.  Lapointe  has  served  on  the  Board  of  Directors  of  the  Pharmaceuticals  Research  and
Manufacturers of America (“PhRMA”) and SciClone Pharmaceuticals, Inc., and has been a member of the Corporate Council of NORD for several years. He
previously served in varying roles for Sigma-Tau Pharmaceuticals, Inc, a private biopharmaceutical company, from September 2001 through March 2012,
including  Chief  Operating  Officer  from  November  2003  to  April  2008  and  Chief  Executive  Officer  from  April  2008  to  March  2012.  From  May,  1996  to
August, 2001, he served as Vice President of Operations and Vice President, Controller of AstenJohnson, Inc. (formerly JWI Inc.). Prior to that, Mr. Lapointe
spent several years in the Canadian medical products industry in both distribution and manufacturing. Mr. Lapointe began his career at Price Waterhouse. Mr.
Lapointe received his B.A. degree in Commerce from Concordia University in Montreal, Canada, a graduate diploma in Accountancy from McGill University
and his M.B.A. degree from Duke University. He is a C.P.A. in the state of Illinois and a Chartered Accountant in Ontario, Canada. Mr. Lapointe was selected
to serve as a member of our Board of Directors because of his significant experience in the areas of global strategic planning and implementation, business
development,  corporate  finance,  and  acquisitions,  and  his  experience  as  an  executive  officer  and  board  member  in  the  pharmaceutical  medical  products
industries.

Robert J. Rubin, MD has been a director since October 2009. Dr. Rubin was a clinical professor of medicine at Georgetown University from1995 until 2012
when  he  was  appointed  a  Distinguished  Professor  of  Medicine.  From  1987  to  2001,  he  was  president  of  the  Lewin  Group  (purchased  by  Quintiles
Transnational Corp. in 1996), an international health policy and management consulting firm. From 1994 to 1996, Dr. Rubin served as Medical Director of
ValueRx, a pharmaceutical benefits company. From 1992 to 1996, Dr. Rubin served as President of Lewin-VHI, a health care consulting company. From 1987
to 1992, he served as President of Lewin-ICF, a health care consulting company. From 1984 to 1987, Dr. Rubin served as a principal of ICF, Inc., a health care
consulting company. From 1981 to 1984, Dr. Rubin served as the Assistant Secretary for Planning and Evaluation at the Department of Health and Human
Services and as the Assistant Surgeon General in the United States Public Health Service. Dr. Rubin has served on the Board of CardioNet, Inc. since 2007.
He is a board certified nephrologist and internist. Dr. Rubin received an undergraduate degree in Political Science from Williams College and his medical
degree from Cornell University Medical College. Dr. Rubin was selected to serve as a member of our Board of Directors because of his vast experience in the
health  care  industry,  including  his  experience  as  a  nephrologist,  internist,  clinical  professor  of  medicine  and  Assistant  Surgeon  General,  and  his  business
experience in the pharmaceutical industry.

Jerome Zeldis, MD, PhD has been a director since June 2011. Dr. Zeldis is currently Chief Executive Officer of Celgene Global Health and Chief Medical
Officer of Celgene Corporation, a publicly traded, fully integrated biopharmaceutical company, where he has been employed since 1997. From September
1994 to February 1997, Dr. Zeldis worked at Sandoz Research Institute and the Janssen Research Institute in both clinical research and medical development.
He  has  been  a  board  member  of  several  biotechnology  companies  and  is  currently  on  the  boards  of  the  NJ  Chapter  of  the  Arthritis  Foundation,  the
Castleman’s  Disease  Organization  and  PTC  Therapeutics.  Additionally,  he  has  served  as  Assistant  Professor  of  Medicine  at  the  Harvard  Medical  School
(from July 1987 to September 1988), Associate Professor of Medicine at University of California, Davis from (September 1988 to September 1994), Clinical
Associate  Professor  of  Medicine  at  Cornell  Medical  School  (January  1995  to  December  2003)  and  Professor  of  Clinical  Medicine  at  the  Robert  Wood
Johnson  Medical  School  (July  1998  to  June  2010).  Dr.  Zeldis  received  a  BA  and  an  MS  from  Brown  University,  and  an  M  Phil,  an  MD,  and  a  PhD  in
Molecular Biophysics and Biochemistry from Yale University. Dr. Zeldis trained in Internal Medicine at the UCLA Center for the Health Sciences and in
Gastroenterology  at  the  Massachusetts  General  Hospital  and  Harvard  Medical  School.  He  has  published  116  peer  reviewed  articles  and  24  reviews,  book
chapters, and editorials. Dr. Zeldis was selected to serve as a member of our Board of Directors because of his experience as an executive officer of a publicly
traded biopharmaceutical company and in clinical research and medical development, and his experience in the health care industry, including his experience
as an internist, gastroenterologist and professor of medicine.

37

 
 
 
 
Robert N. Brey, PhD has been with the Company since January 1996 and is currently our Chief Scientific Officer and Senior Vice President. He has also
held the positions of Vice President Vaccine Development and Vice President of Research and Development. He also has held Scientific, Management and
Project Management positions in the Lederle-Praxis division of American Cyanamid, now a division of Wyeth, in which he participated in the successful
development of a vaccine for Haemophilius nfluenza meningitis, and a vaccine for pneumonia. While at Lederle-Praxis, Dr. Brey was Manager of Molecular
Biology Research for vaccines and Project Manager for development of oral vaccines from 1985 through 1993. From 1993 through 1994, Dr. Brey served as
Director of Research and Development of Vaxcel, in which he was responsible for developing adjuvant technology and formulations for improved vaccines.
From 1994 through 1996, Dr. Brey established an independent consulting group, Vaccine Design Group, to identify and develop novel vaccine technologies
and platforms. Before entering into drug and vaccine delivery, he held senior scientific positions at Genex Corporation from 1982 through 1986. Dr. Brey
received  a  B.S.  degree  in  Biology  from  Trinity  College  in  Hartford,  Connecticut,  his  PhD  degree  in  Microbiology  from  the  University  of  Virginia  and
performed postdoctoral studies at MIT with Nobel Laureate Salvador Luria.

Kevin  J.  Horgan,  MD  has  been  with  the  Company  since  January  2011  and  is  currently  our  Chief  Medical  Officer.  Dr.  Horgan  is  a  board-certified
gastroenterologist with more than 25 years academic and pharmaceutical experience. He has conducted research in cellular immunology and has experience
in the care of patients with inflammatory bowel disease, including GVHD. Prior to joining Soligenix, Dr. Horgan served from 1997 to 2005 as Senior Director
of Clinical Research at Merck & Co., Inc., where he led the development of the first neurokinin-1 receptor antagonist, EMEND® , which was approved for the
prevention of chemotherapy-induced nausea and vomiting. From 2006 to 2008, he was Vice President of Clinical Immunology at Centocor Ortho Biotech
Inc.,  where  he  designed  and  conducted  gastroenterology  clinical  studies  for  new  compounds  and  indications  including  REMICADE™.  From  2008  until
joining  Soligenix,  Dr.  Horgan  was  Head  of  Internal  Medicine  Research  and  Development  in  medical  imaging  with  specific  focus  on  oncology  and
neuroscience with GE Healthcare (a unit of General Electric Company). Dr. Horgan received his medical degree from University College, Cork, Ireland and
completed training in internal medicine with Queen Elizabeth Hospital, Birmingham, United Kingdom and Johns Hopkins Hospital, Baltimore, MD, followed
by  an  immunology  research  fellowship  with  the  National  Cancer  Institute  in  Bethesda,  MD.  His  research  on  human  T-cell  differentiation,  activation  and
migration with emphasis on integrin adhesion molecules provided a framework for subsequent validation of three therapeutic targets. Dr. Horgan then did a
fellowship in gastroenterology with University of California at Los Angeles and was then an Assistant Professor of Medicine there, where his research focus
was gastrointestinal inflammatory disorders.

Joseph M. Warusz, CPA has more than 28 years of financial management experience in public and private life science companies as well as large pharma.
Prior to joining Soligenix on June 1, 2011 as Vice President of Administration and Controller, he held senior financial positions with Amicus Therapeutics,
Inc., Orchid Cellmark, Inc., and NexMed, Inc., as well as consulting assignments at Ardea BioSciences, Inc., and NovaDel Pharma, Inc., all R&D-focused
companies  in  the  biotechnology  and  specialty  pharmaceuticals  arenas.  On  February  15,  2012,  he  was  appointed  Acting  Chief  Financial  Officer  of  the
Company. Prior to 1998, Mr. Warusz also held management positions in financial analysis, accounting, reporting and auditing at Bristol-Myers Squibb and
Peat Marwick Main & Company. He received his BS in accounting and MBA in finance at Drexel University and is a Certified Public Accountant.

Board Leadership Structure

Our Board of Directors believes that Dr. Schaber’s service as both the Chairman of our Board of Directors and our Chief Executive Officer is in the best
interest of our Company and our stockholders. Dr. Schaber possesses detailed and in-depth knowledge of the issues, opportunities and challenges facing our
Company and our business and, therefore, is best positioned to develop agendas that ensure that the Board of Directors’ time and attention are focused on the
most important matters. His combined role enables decisive leadership, ensures clear accountability, and enhances our ability to communicate our message
and strategy clearly and consistently to our stockholders, employees, and collaborative partners.

38

 
 
 
 
 
 
 
Messrs. Brownlie, Lapointe Dr. Rubin, and Dr. Zeldis are independent and the Board of Directors believes that the independent directors provide effective
oversight of management. Moreover, in addition to feedback provided during the course of meeting of the Board of Directors, the independent directors hold
executive sessions. Following an executive session of independent directors, the independent directors’ report back to the full Board of Directors regarding
any specific feedback or issues, provides the Chairman with input regarding agenda items for Board of Directors and Committee meetings, and coordinates
with the Chairman regarding information to be provided to the independent directors in performing their duties. The Board of Directors believes that this
approach appropriately and effectively complements the combined Chairman/Chief Executive Officer structure.

Although the Company believes that the combination of the Chairman and Chief Executive Officer roles is appropriate under the current circumstances, our
corporate governance guidelines do not establish this approach as a policy, and the Board of Directors may determine that it is more appropriate to separate
the roles in the future.

Section 16(a) Beneficial Ownership Reporting Compliance

We are required to identify each person who was an officer, director or beneficial owner of more than 10% of our registered equity securities during our most
recent fiscal year and who failed to file on a timely basis reports required by Section 16(a) of the Securities Exchange Act of 1934.

To  our  knowledge,  based  solely  on  review  of  these  filings  and  written  representations  from  the  certain  reporting  persons,  we  believe  that  during  the  year
ended December 31, 2012, our officers, directors and significant stockholders have timely filed the appropriate form under Section 16(a) of the Exchange
Act.

Code of Ethics

We have adopted a code of ethics that applies to all of our executive officers and senior financial officers (including our chief executive officer, chief financial
officer,  chief  accounting  officer  and  any  person  performing  similar  functions).  A  copy  of  our  code  of  ethics  is  publicly  available  on  our  website  at
http://www.soligenix.com under the “Investors” section. If we make any substantive amendments to our code of ethics or grant any waiver, including any
implicit waiver, from a provision of the code to our chief executive officer, chief financial officer or chief accounting officer, we will disclose the nature of
such amendment or waiver in a Current Report on Form 8-K.

Diversity Considerations in Identifying Director Nominees

We  do  not  have  a  formal  diversity  policy  or  set  of  guidelines  in  selecting  and  appointing  directors  that  comprise  our  Board  of  Directors.  However,  when
making recommendations to our Board of Directors regarding the size and composition of our Board of Directors, our Nominating Committee does consider
each individual director’s qualifications, skills, business experience and capacity to serve as a director and the diversity of these attributes for the Board of
Directors as a whole.

Audit Committee Financial Expert

We have an audit committee comprised of Messrs. Brownlie (Chair) and Lapointe and Dr. Rubin. The board of directors has determined that Mr. Brownlie
qualifies as an “audit committee financial expert,” as defined under the rules of the Securities and Exchange Commission. The board of directors has also
determined that the members of the Audit Committee are qualified to serve on the committee and have the experience and knowledge to perform the duties
required of the committee.

The board of directors has determined that Messrs. Brownlie and Lapointe and Dr. Rubin are “independent directors” within the meaning of The NASDAQ
Stock Market LLC (“Nasdaq”) corporate governance rules and the regulations under the Securities Exchange Act of 1934 (“Exchange Act”) applicable to
audit committees.

39

 
 
 
 
 
Item 11. Executive Compensation

Summary Compensation

The following table contains information concerning the compensation paid during each of the two years ended December 31, 2012 to our Chief Executive
Officer and each of the four other most highly compensated executive officers during 2012 (collectively, the “Named Executive Officers”).

Summary Compensation

Name

Position

Christopher J. Schaber1   CEO & President

Robert N. Brey2

  CSO & Senior VP  

Kevin J. Horgan3

Joseph M. Warusz4

CMO & Senior
VP

 VP & Acting
CFO

Year
2012
2011
2012
2011

2012
2011

2012
2011

  $
  $
  $
  $

  $
  $

  $
  $

Salary

Bonus

Option
Awards

All Other
Compensation   

Total

390,000     
370,000    $
210,000     
210,000    $

-     
50,000    $
-     
13,000    $

-    $
68,400    $
-    $
19,950    $

290,000     
281,589    $

-     
16,000    $

-    $
203,575    $

180,000     
104,028    $

-     
7,000    $

-    $
152,620    $

38,006 
35,529 
23,375 
21,853 

26,214 
22,543 

38,006 
19,627 

 $
 $
 $
 $

 $
 $

 $
 $

428,006 
523,929 
233,375 
264,803 

316,214 
523,707 

218,006 
283,275 

1 Dr.  Schaber  deferred  payment  of  his  2011  annual  bonus  of  $50,000  until  January  15,  2012.  Option  award  figures  include  the  value  of  common  stock
option awards at grant date as calculated under FASB ASC 718. Other compensation represents health insurance costs paid by the Company. In 2012, no
bonus was awarded or option awards issued.

2 Dr. Brey deferred payment of his 2011 annual bonus of $13,000 until January 15, 2012. Option award figures include the value of common stock option
awards at grant date as calculated under FASB ASC 718. Other compensation represents health insurance costs paid by the Company. In 2012, no bonus
was awarded or option awards issued

3 Dr.  Horgan  deferred  payment  of  his  2011  annual  bonus  of  $13,000  until  January  15,  2012.  Option  award  figures  include  the  value  of  common  stock
option awards at grant date as calculated under FASB ASC 718. Other compensation represents health insurance costs paid by the Company. In 2012, no
bonus was awarded or option awards issued

4 Mr. Warusz deferred payment of his 2011 annual bonus of $7,000 until January 15, 2012. Option award figures include the value of common stock option
awards at grant date as calculated under FASB ASC 718. Other compensation represents health insurance costs paid by the Company. In 2012, no bonus
was awarded or option awards issued

Employment and Severance Agreements

In August 2006, we entered into a three-year employment agreement with Christopher J. Schaber, PhD. Pursuant to this employment agreement we agreed to
pay Dr. Schaber a base salary of $300,000 per year and a minimum annual bonus of $100,000. This employment agreement was renewed in December 27,
2007  for  an  additional  term  of  three  years.  We  agreed  to  issue  him  options  to  purchase  125,000  shares  of  our  common  stock,  with  one  third  immediately
vesting and the remainder vesting over three years. Upon termination without “Just Cause” as defined by this agreement, we would pay Dr. Schaber nine
months of severance, as well as any accrued bonuses, accrued vacation, and we would provide health insurance and life insurance benefits for Dr. Schaber
and his dependants. No unvested options shall vest beyond the termination date. Dr. Schaber’s monetary compensation (base salary of $300,000 and bonus of
$100,000) remained unchanged from 2006 with the 2007 renewal. Upon a change in control of the Company due to merger or acquisition, all of Dr. Schaber’s
options shall become fully vested, and be exercisable for a period of five years after such change in control (unless they would have expired sooner pursuant
to their terms). In the event of his death during the term of the agreement, all of his unvested options shall immediately vest and remain exercisable for the
remainder  of  their  term  and  become  the  property  of  Dr.  Schaber’s  immediate  family.  This  agreement  automatically  renewed  in  December  2010  for  an
additional term of three years.

40

 
 
 
 
 
 
   
   
   
 
 
 
   
 
 
   
 
 
 
 
   
 
 
 
 
   
 
 
 
 
 
 
On June 22, 2011, the Compensation Committee approved the increase in salary for Dr. Schaber to $390,000. Additionally, his fixed minimum annual bonus
payable was eliminated and revised to an annual targeted bonus of his annual base salary. Dr. Schaber’s targeted bonus is 40%. On December 6, 2012, the
Compensation Committee approved the increase in salary for Dr. Schaber to $402,000.

In January 2011, we entered into a two-year employment agreement with Dr. Kevin J. Horgan. Pursuant to this employment agreement we agreed to pay Dr.
Horgan a base salary of $290,000 per year, a one-time signing bonus of $15,000 and a targeted annual bonus of 30% of base salary. We agreed to issue him
options to purchase 62,500 shares of our common stock, with one third immediately vesting and the remainder vesting over three years. Upon termination
without “Just Cause” as defined by this agreement, we would pay Dr. Horgan six months of severance, as well as any accrued bonuses, accrued vacation, and
we would provide health insurance benefits for Dr. Horgan and his dependants. No unvested options shall vest beyond the termination date. On December 6,
2012, the Compensation Committee approved the increase in salary for Dr. Horgan to $300,000.

We do not currently have an employment agreement with Dr. Robert N. Brey, our Chief Scientific Officer and Senior Vice President. Dr. Brey’s compensation
is determined by our Board of Directors and our Compensation Committee. On December 6, 2012, the Compensation Committee approved the increase in
salary for Dr. Brey to $214,000.

In May 2011, we entered into a one-year employment agreement with Mr. Joseph M. Warusz, our Acting Chief Financial Officer, Vice President Finance and
Chief  Accounting  Officer.  Pursuant  to  the  agreement,  we  have  agreed  to  pay  Mr.  Warusz  $175,000  per  year  and  a  targeted  annual  bonus  of  20%  of  base
salary. We also agreed to issue him options to purchase 40,000 shares of our common stock with one-third immediately vesting and the remainder vesting
over three years. Upon termination without “Just Cause”, as defined in this agreement, we would pay Mr. Warusz three months of severance, accrued bonuses
and  vacation,  and  health  insurance  benefits.  No  unvested  options  vest  beyond  the  termination  date.  On  December  1,  2011,  the  Compensation  Committee
increased  the  salary  of  Mr.  Warusz  to  $180,000.  On  December  6,  2012,  the  Compensation  Committee  approved  the  increase  in  salary  for  Mr.  Warusz  to
$186,000.

In February 2007, our Board of Directors authorized the issuance of the following number of shares to each of Dr. Schaber and Dr. Brey immediately prior to
the  completion  of  a  transaction,  or  series  or  a  combination  of  related  transactions  negotiated  by  our  Board  of  Directors  whereby,  directly  or  indirectly,  a
majority of our capital stock or a majority of our assets are transferred from the Company and/or our stockholders to a third party: 50,000 common shares to
Dr. Schaber and 10,000 common shares to Dr. Brey. The amended agreement with Dr. Schaber includes our obligation to issue such shares to him if such
event occurs.

41

 
 
 
 
 
Outstanding Equity Awards at Fiscal Year-End

The  following  table  contains  information  concerning  unexercised  options,  stock  that  has  not  vested,  and  equity  incentive  plan  awards  for  the  Named
Executive Officers outstanding at December 31, 2012. We have never issued Stock Appreciation Rights.

Christopher J. Schaber

Name

Robert N. Brey

Kevin J. Horgan

Joseph M. Warusz

Outstanding Equity Awards at Fiscal Year-End

Number of Securities
Underlying Unexercised
Options
 (#)
  Exercisable     Unexercisable    

Equity Incentive Plan
Awards: Number of 
Securities Underlying
Unexercised Unearned   
Options (#)

Option
Exercise
Price
($)

- 
- 
- 
20,625 
60,000 

- 
- 
- 
7,971 
17,498 

19,533 
30,000 

15,000 
15,000 

125,000 
45,000 
140,000 
89,375 
60,000 

30,000 
10,000 
40,000 
34,529 
17,502 

42,976 
30,000 

25,000 
15,000 

42

- 
- 
- 
20,625 
60,000 

- 
- 
- 
7,971 
17,498 

19,533 
30,000 

15,000 
15,000 

 $
 $
 $
 $
 $

 $
 $
 $
 $
 $

 $
 $

 $
 $

5.40 
9.40 
1.20 
4.64 
0.64 

6.60 
9.40 
1.20 
4.64 
0.64 

3.44 
0.64 

4.10 
0.64 

Option
Expiration
Date
8/28/2016
8/9/2017
12/17/2018
6/30/2020
11/30/2021

5/10/2016
8/9/2017
12/17/2018
6/30/2020
11/30/2021

1/30/2021
11/30/2021

5/30/2021
11/30/2021

 
 
 
 
 
 
 
   
 
   
 
  
  
  
 
  
  
  
 
  
  
  
 
  
  
  
 
  
  
  
 
   
      
      
      
    
  
  
  
 
  
  
  
 
  
  
  
 
  
  
  
 
  
  
  
 
   
      
      
      
    
  
  
  
 
  
  
  
 
   
      
      
      
    
  
  
  
 
  
  
  
 
 
Compensation of Directors

The following table contains information concerning the compensation of the non-employee directors during the fiscal year ended December 31, 2012.

Compensation of Directors

Name

Keith Brownlie
Tamar D. Howson3
Gregg A. Lapointe
Robert J. Rubin
Virgil D. Thompson3
Jerry Zeldis

Fees Earned
Paid in Cash1    

Option
Awards2

Total

  $
  $
  $
  $
  $
  $

56,250    $
22,500     
42,500    $
54,375    $
24,375     
47,500    $

7,500    $
-    $
7,500    $
7,500    $
-    $
7,500    $

63,750 
22,500 
50,000 
61,875 
24,375 
55,500 

 1 Directors  who  are  compensated  as  full-time  employees  receive  no  additional  compensation  for  service  on  our  Board  of  Directors.  Each  independent
director  who  is  not  a  full-time  employee  is  paid  $35,000  annually,  on  a  prorated  basis,  for  their  service  on  our  Board  of  Directors,  the  chairman  of
our Audit  Committee  is  paid  $15,000  annually,  on  a  prorated  basis,  and  the  chairmen  of  our  Compensation  and  Nominating  Committees  will  be  paid
$10,000 annually, on a prorated basis. Additionally, Audit Committee members are paid $7,500 annually and Compensation and Nominating Committee
members are paid $5,000 annually. This compensation is paid quarterly.

2 We maintain a stock option grant program pursuant to the nonqualified stock option plan, whereby members of our Board of Directors or its committees
who  are  not  full-time  employees  receive  an  initial  grant  of  fully  vested  options  to  purchase  15,000  shares  of  common  stock.  Upon  re-election  to  the
Board,  each  Board  member  will  receive  25,000  stock  options  which  vest  at  the  rate  of  25%  per  quarter,  commencing  with  the  first  quarter  after  each
annual meeting of stockholders.

3 Ms. Howson and Mr. Thompson did not stand for re-election to the Board of Directors at our June 21, 2012 Annual Meeting of Stockholders.

Stock Ownership Policy

In April 2012, our Board of Directors adopted a stock ownership policy applicable to our non-employee directors to strengthen the link between director and
stockholder interests. Pursuant to the stock ownership policy, each non-employee director is required to hold a minimum ownership position in the common
stock equal to the annual cash compensation paid for service on the Board of Directors, exclusive of cash compensation paid for service as a chair or member
of any committees of the Board of Directors.

Stock counted toward the ownership requirement includes common stock held by the director, unvested and vested restricted stock, and all shares of common
stock  beneficially  owned  by  the  director  held  in  a  trust  and  by  a  spouse  and/or  minor  children  of  the  director.  The  policy  provides  that  the  ownership
requirement must be attained within three years after the later of June 21, 2012 and the date a director is first elected or appointed to the Board of Directors.
To  monitor  progress  toward  meeting  the  requirement,  the  Nominating  Committee  will  review  director  ownership  levels  at  the  end  of  March  of  each  year.
Non-employee directors are prohibited from selling any shares of common stock unless such director is in compliance with the stock ownership policy. A
copy of our director compensation and stock ownership policy is publicly available on our website at www.soligenix.com under the “Investors” section.

43

 
 
 
   
 
 
 
 
 
Item 12. Security Ownership of Certain Beneficial Owners and Management and Related Stockholder Matters

The table below provides information regarding the beneficial ownership of the common stock as of April 1, 2013, of (1) each person or entity who owns
beneficially 5% or more of the shares of our outstanding common stock, (2) each of our directors, (3) each of the Named Executive Officers, and (4) our
directors and officers as a group. Except as otherwise indicated, and subject to applicable community property laws, we believe the persons named in the table
have sole voting and investment power with respect to all shares of common stock held by them.

Beneficial Ownership

Name of Beneficial Owner

Paolo Cavazza1
Claudio Cavazza (deceased)2
Sigma-Tau Pharmaceuticals, Inc. 3
Christopher J. Schaber 4
Gregg A. Lapointe 5
Robert N. Brey 6
Robert J. Rubin 7
Joseph Warusz 8
Kevin J. Horgan 9
Keith Brownlie10
Jerry Zeldis 11
All directors and executive officers as a group (8 persons)

Shares of
Common
Stock
Beneficially
Owned**

Percent of
Class

3,379,952     
3,068,461     
3,068,461     
532,759     
132,636     
139,531     
70,349     
44,375     
80,623     
33,750     
33,750     
1,067,773     

29.08%
26.60%
26.6.0%
4.57%
* 
* 
* 
* 
* 
* 
* 
8.80%

1

2

3

4

5

6

7

8

9

10

Includes (a) 2,711,392 shares of common stock and warrants to purchase 357,069 shares of common stock exercisable within 60 days of January 31,
2013 held by Sigma-Tau Pharmaceuticals, Inc., (b) 223,685 shares of common stock and warrants to purchase 87,854 shares held by SINAF SA, and (c)
59,539 shares held by Mr. Paolo Cavazza. Sigma-Tau Pharmaceuticals, Inc. is a direct wholly-owned subsidiary of Sigma-Tau America S.A., which is a
direct wholly-owned subsidiary of Sigma-Tau International S.A., which is a direct wholly-owned subsidiary of Sigma-Tau Finanziaria S.p.A. Mr. Paolo
Cavazza directly and indirectly owns 38% of Sigma-Tau Finanziaria S.p.A. SINAF SA is an indirect wholly owned subsidiary of Aptafin S.p.A., which is
owned by Mr. Paolo Cavazza and members of his family. Accordingly, Mr. Paolo Cavazza may be deemed to beneficially own the shares beneficially
owned by Sigma-Tau Pharmaceuticals, Inc. and Chaumiere Sarl. Mr. Paolo Cavazza’s address is Via Tesserte, 10, Lugano, Switzerland.
Includes 2,711,392 shares of common stock and warrants to purchase 357,072 shares of common stock exercisable within 60 days of January 31, 2013
held by Sigma-Tau Pharmaceuticals, Inc. Sigma-Tau Pharmaceuticals, Inc. is a direct wholly-owned subsidiary of Sigma-Tau America S.A., which is a
direct wholly-owned subsidiary of Sigma-Tau International S.A., which is a direct wholly-owned subsidiary of Sigma-Tau Finanziaria S.p.A. Mr. Claudio
Cavazza directly and indirectly owns 57% of Sigma-Tau Finanziaria S.p.A. Accordingly, Mr. Claudio Cavazza may be deemed to beneficially own the
shares beneficially owned by Sigma-Tau Pharmaceuticals, Inc. Mr. Claudio Cavazza’s address is Via Sudafrica, 20, Rome, Italy 00144. The address of
Sigma-Tau Pharmaceuticals, Inc. is c/o Sigma-Tau Pharmaceuticals, Inc., 9841 Washingtonian Boulevard, Suite 500, Gaithersburg, Maryland 20878.
Includes 2,280,962 shares of common stock and warrants to purchase 98,814 shares of common stock exercisable within 60 days of January 31, 2013.
The amount does not include 77,344 shares of common stock held by Paolo Cavazza, one of the principal owners of Sigma-Tau. The address of Sigma-
Tau Pharmaceuticals, Inc. is c/o Sigma-Tau Pharmaceuticals, Inc., 9841 Washingtonian Boulevard, Suite 500, Gaithersburg, Maryland 20878.
Includes  50,158  shares  of  common  stock  owned  by  Dr.  Schaber,  options  to  purchase  480,625  shares  of  common  stock  exercisable  within  60  days  of
January 31, 2013, and warrants to purchase 1,976 shares of common stock exercisable within 60 days of January 31, 2013. The address of Dr. Schaber is
c/o Soligenix, 29 Emmons Drive, Suite C-10, Princeton, New Jersey 08540.
Includes  48,781  shares  of  common  stock,  options  to  purchase  50,837  shares  of  common  stock  exercisable  within  60  days  of  January  31,  2013,  and
warrants to purchase 29,268 shares of common stock exercisable within 60 days of January 31, 2013. The address of Mr. Lapointe is c/o Soligenix, 29
Emmons Drive, Suite C-10, Princeton, New Jersey 08540.
Includes options to purchase 139,531 shares of common stock exercisable within 60 days of January 31, 2013. The address of Dr. Brey is c/o Soligenix,
29 Emmons Drive, Suite C-10, Princeton, New Jersey 08540.
Includes  12,195  shares  of  common  stock,  options  to  purchase  50,837  shares  of  common  stock  exercisable  within  60  days  of  January  31,  2013,  and
warrants  to  purchase  7,317  shares  of  common  stock  exercisable  within  60  days  of  January  31,  2013.  The  address  of  Dr.  Rubin  is  c/o  Soligenix,  29
Emmons Drive, Suite C-10, Princeton, New Jersey 08540.
Includes options to purchase 44,375 shares of common stock owned by Mr. Warusz exercisable within 60 days of January 31, 2013. The address of Mr.
Warusz is c/o Soligenix, 29 Emmons Drive, Suite C-10, Princeton, New Jersey 08540.
Includes options to purchase 80,623 shares of common stock owned by Dr. Horgan exercisable within 60 days of January 31, 2013. The address of Dr.
Horgan is c/o Soligenix, 29 Emmons Drive, Suite C-10, Princeton, New Jersey 08540.
Includes  options  to  purchase  33,750  shares  of  common  stock  exercisable  within  60  days  of  January  31,  2013.  The  address  of  Mr.  Brownlie  is  c/o
Soligenix, 29 Emmons Drive, Suite C-10, Princeton, New Jersey 08540

44

 
 
 
   
 
  
  
  
  
  
  
  
  
  
  
  
  
 
 
 
11

Includes options to purchase 33,750 shares of common stock exercisable within 60 days of January 31, 2012. The address of Mr. Zeldis is c/o Soligenix,
29 Emmons Drive, Suite C-10, Princeton, New Jersey 08540
Indicates less than 1%.

*
** Beneficial ownership is determined in accordance with the rules of the SEC. Shares of common stock subject to options or warrants currently exercisable
or exercisable within 60 days of January 31, 2013 are deemed outstanding for computing the percentage ownership of the stockholder holding the options
or  warrants,  but  are  not  deemed  outstanding  for  computing  the  percentage  ownership  of  any  other  stockholder.  Percentage  of  ownership  is  based  on
11,179,968 shares of common stock outstanding as of January 31, 2013.

Equity Compensation Plan Information

In  December  2005,  our  Board  of  Directors  approved  the  2005  Equity  Incentive  Plan,  which  was  approved  by  stockholders  on  December  29,  2005.  In
September 2007, our stockholders approved an amendment to the 2005 Equity Incentive Plan to increase the maximum number of shares of our common
stock  available  for  issuance  under  the  plan  by  1,000,000  shares,  bringing  the  total  shares  reserved  for  issuance  under  the  plan  to  2,000,000  shares.  In
September  2010,  our  stockholders  approved  a  second  amendment  to  the  2005  Equity  Incentive  Plan  to  increase  the  maximum  number  of  shares  of  our
common stock available for issuance under the plan by 750,000 shares, bringing the total shares reserved for issuance under the plan to 1,750,000 shares. The
following table provides information, as of December 31, 2012 with respect to options outstanding under our 1995 Amended and Restated Omnibus Incentive
Plan and our 2005 Equity Incentive Plan.

Number of
Securities
to be Issued upon
Exercise
of Outstanding
Options, Warrants
and Rights

Weighted-Average
Exercise Price of
Outstanding Options,
Warrants and Rights    

Number of
Securities
Remaining
Available for
Future Issuance
Under Equity
Compensation
Plans
(excluding
securities reflected
in the first
column)

1,457,724 
- 
1,457,724 

 $

 $

3.20 
- 
3.20 

129,711 
- 
129,711 

Plan Category
Equity compensation plans approved by security holders1
Equity compensation plans not approved by security holders
Total

1

Includes  our  1995  Amended  and  Restated  Omnibus  Incentive  Plan  and  our  2005  Equity  Incentive  Plan.    Our  1995  Plan  expired  in  2005  and  thus  no
securities remain available for future issuance under that plan.

Item 13. Certain Relationships and Related Transactions and Director Independence

Related Party Transactions

Other than the employment agreements and compensation paid to our directors, we did not engage in any transactions with related
parties since January 1, 2011.  For a discussion of our employment agreements and compensation paid to our directors, see “Item
11. Executive Compensation.”

Director Independence

The  Board  of  Directors  has  determined  that  Keith  Brownlie,  Gregg  Lapointe,  Dr.  Robert  Rubin  and  Dr.  Jerome  Zeldis  are
“independent”  as  such  term  is  defined  by  the  applicable  listing  standards  of  Nasdaq.  Our  Board  of  Directors  based  this
determination primarily on a review of the responses of the Directors to questionnaires regarding their employment, affiliations and
family and other relationships.

45

 
 
 
 
   
 
  
  
  
  
  
  
  
 
 
 
Item 14. Principal Accountant Fees and Services

The following table highlights the aggregate fees billed during each of the two years ended December 31, 2012 by EisnerAmper, LLP.

Audit fees
Tax fees

Total

Other Fees

2012

2011

121,590 
8,400 

 $

137,847 
8,524 

129,990 

 $

146,371 

 $

 $

Our  principal  accountants  did  not  bill  us  for  any  services  or  products  other  than  as  reported  above  in  this  Item  14  during  each  of  the  two  years  ended
December 31, 2012.

Pre-Approval Policies and Procedures

The  audit  committee  has  adopted  a  policy  that  requires  advance  approval  of  all  audit  services  and  permitted  non-audit  services  to  be  provided  by  the
independent auditor as required by the Exchange Act. The audit committee must approve the permitted service before the independent auditor is engaged to
perform it. The audit committee approved all of the services described above in accordance with its pre-approval policies and procedures.

46

 
 
 
 
   
 
  
  
 
   
      
  
 
 
Item 15. Exhibits and Financial Statements Schedules

a. (1)     Consolidated Financial Statements:

Part IV

      The financial statements required to be filed by Item 8 of this Annual Report on Form 10-K and filed in this Item 15, are as follows:

Consolidated Balance Sheets as of December 31, 2012 and 2011
Consolidated Statements of Operations for the Years Ended December 31, 2012 and 2011
Consolidated Statements of Stockholders’ Deficiency for the Years Ended December 31, 2012 and 2011
Consolidated Statements of Cash Flows for the Years Ended December 31, 2012 and 2011
Notes to Consolidated Financial Statements
Reports of Independent Registered Public Accounting Firms

F-2
F-3
F-4
F-5
F-6
F-20

    (2)      Financial Statement Schedules

   Schedules are omitted because they are not applicable, or are not required, or because the information is included in the consolidated financial

statements and notes thereto.

    (3)      Exhibits:

2.1

3.1

3.2

4.1

4.2

4.3

4.4

4.5

4.6

Agreement  and  Plan  of  Merger,  dated  May  10,  2006  by  and  among  the  Company,  Corporate  Technology  Development,  Inc.,  Enteron
Pharmaceuticals, Inc. and CTD Acquisition, Inc. (incorporated by reference to Exhibit 2.1 included in our Registration Statement on Form SB-2 (File
No. 333-133975) filed on May 10, 2006).

Second Amended and Restated Certificate of Incorporation (incorporated by reference to Exhibit 3.1 included in our current report on Form 8-K filed
on June 22, 2012). 

By-laws (incorporated by reference to Exhibit 3.1 included in our Quarterly Report on Form 10-QSB, as amended, for the fiscal quarter ended June
30, 2003).

Rights Agreement dated June 22, 2007, between the Company and American Stock Transfer & Trust Company, as Rights Agent (incorporated by
reference to Exhibit 4.1 included in our current report on Form 8-K filed on June 22, 2007).

Form of Right Certificate (incorporated by reference to Exhibit 4.2 included in our current report on Form 8-K filed on June 22, 2007).

Form of Warrant issued to each investor in the January 2009 private placement (incorporated by reference to Exhibit 4.18 included in our Registration
Statement on Form S-1 (File No. 333-149239) filed on February 14, 2008).

Form of Warrant issued to each investor in the September 2009 private placement (incorporated by reference to Exhibit 10.2 included in our current
report on Form 8-K filed on September 29, 2009).

Warrant  dated  April  19,  2010,  issued  to  Fusion  Capital  Fund  II,  LLC  (incorporated  by  reference  to  Exhibit  4.10  included  in  our  Post-Effective
Amendment to Registration Statement on Form S-1 filed on April 20, 2010).

Form  of  Common  Stock  Purchase  Warrant  issued  to  each  investor  in  the  June  2010  private  placement  (incorporated  by  reference  to  Exhibit  10.2
included in our current report on Form 8-K filed on June 18, 2010).

10.1

Amended and Restated 1995 Omnibus Incentive Plan (incorporated by reference to Exhibit 10.1 included in our Quarterly Report on Form 10-QSB,
as amended, for the fiscal quarter ended September 30, 2003). **

47

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
10.2

10.3

10.4

10.5

License  Agreement  between  the  Company  and  the  University  of  Texas  Southwestern  Medical  Center  (incorporated  by  reference  to  Exhibit  10.9
included in our Annual Report on Form 10-KSB filed March 30, 2004, as amended, for the fiscal year ended December 31, 2004).

License Agreement between the Company and Thomas Jefferson University (incorporated by reference to Exhibit 10.9 included in our Annual Report
on Form 10-KSB, as amended, for the fiscal year ended December 31, 2004).

License Agreement between the Company and the University of Texas Medical Branch (incorporated by reference to Exhibit 10.10 included in our
Annual Report on Form 10-KSB, as amended, for the fiscal year ended December 31, 2004).

Consulting  Agreement  between  the  Company  and  Lance  Simpson  of  Thomas  Jefferson  University.  (incorporated  by  reference  to  Exhibit  10.43
included in our Annual Report on Form 10-KSB as amended for the fiscal year ended December 31, 2002).

10.6

2005 Equity Incentive Plan (incorporated by reference to Appendix D to our Proxy Statement filed December 12, 2005). **

10.7

10.8

10.9

Form S-8 Registration of Stock Options Plan dated December 30, 2005 (incorporated by reference to our registration statement on Form S-8 filed on
December 30, 2005).

Letter of Intent dated January 3, 2007 by and between the Company and Sigma-Tau Pharmaceuticals, Inc. (incorporated by reference to Exhibit 10.1
included in our current report on Form 8-K filed on January 4, 2007).

Letter from Sigma-Tau Pharmaceuticals, Inc. dated February 21, 2007 (incorporated by reference to Exhibit 10.1 included in our current report on
Form 8-K filed on February 23, 2007).

10.10 Letter  dated  May  3,  2007  between  the  Company  and  Sigma-Tau  Pharmaceuticals,  Inc.  (incorporated  by  reference  to  Exhibit  10.1  included  in  our

current report on Form 8-K filed on May 4, 2007).

10.11 Employment  Agreement  dated  December  27,  2007,  between  Christopher  J.  Schaber,  PhD  and  the  Company  (incorporated  by  reference  to  Exhibit

10.30 included in our Annual Report on Form 10-K for the fiscal year ended December 31, 2008). **

10.12 Employment Agreement dated December 27, 2007, between Evan Myrianthopoulos and the Company (incorporated by reference to Exhibit 10.31

included in our Annual Report on Form 10-K for the fiscal year ended December 31, 2008). **

10.13 Common Stock Purchase Agreement dated February 14, 2008, between the Company and Fusion Capital Fund II, LLC (incorporated by reference to

Exhibit 10.35 included in our Registration Statement on Form S-1 filed on February 14, 2008).

10.14 Registration  Rights  Agreement  dated  February  14,  2008,  between  the  Company  and  Fusion  Capital  Fund  II,  LLC  (incorporated  by  reference  to

Exhibit 10.35 included in our Registration Statement on Form S-1 (File No. 333-149239) filed on February 14, 2008).

10.15 Letter dated December 1, 2008, between the Company and Sigma-Tau Pharmaceuticals, Inc. (incorporated by reference to Exhibit 10.1 included in

our current report on Form 8-K filed on December 1, 2008).

10.16

Exclusive  License  Agreement  dated  November  24,  1998,  between  Enteron  Pharmaceuticals,  Inc.  and  George  B.  McDonald,  MD and amendments
(incorporated by reference to Exhibit 10.42 included in our Registration Statement on Form S-1 (File No. 333-157322) filed on February 13, 2009).

10.17

Collaboration  and  Supply  Agreement  dated  February  11,  2009,  between  the  Company  and  Sigma-Tau  Pharmaceuticals,  Inc.  (incorporated  by
reference to Exhibit 10.43 included in our Registration Statement on Form S-1 (File No. 333-157322) filed on February 13, 2009). †

48

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
10.18 First Amendment to Common Stock Purchase Agreement dated April 19, 2010 between the Company and Fusion Capital Fund II, LLC (incorporated
by reference to Exhibit 10.34 included in our Post-Effective Amendment to Registration Statement on Form S-1 (File No. 333-149239) filed on April
20, 2010).

10.19 Amendment to Employment Agreement dated as of January 4, 2011, between The Company and Evan Myrianthopoulos (incorporated by reference to

Exhibit 10.1 included in our current report on Form 8-K filed on January 6, 2011). **

10.20 Employment Agreement dated as of January 31, 2011 between Kevin Horgan, M.D., and The Company (incorporated by reference to Exhibit 10.1

included in our current report on Form 8-K filed on February 2, 2011). **

10.21 Employment Agreement dated as of May 31, 2011, between Joseph M. Warusz and The Company (incorporated by reference to Exhibit 10.1 of our

current report on Form 8-K filed on May 31, 2011).**

10.22 First Amendment to Employment Agreement dated as of July 12, 2011, between The Company and Christopher J. Schaber, PhD (incorporated by

reference to Exhibit 10.1 of our current report on Form 8-K filed on July 14, 2011).**

10.23 Second  Amendment  to  Employment  Agreement  dated  as  of  July  12,  2011,  between  The  Company  and  Evan  Myrianthopoulos  (incorporated  by

reference to Exhibit 10.2 of our current report on Form 8-K filed on July 14, 2011).**

10.24 Amendment  to  the  Collaboration  and  Supply  Agreement  dated  July  26,  2011,  between  Sigma-Tau  Pharmaceuticals,  Inc.  and  The  Company

(incorporated by reference to Exhibit 10.1 of our current report on Form 8-K filed on July 28, 2011).

10.25 Amendment  to  the  Exclusive  License  Agreement  dated  as  of  July  26,  2011,  between  George  McDonald,  MD  and  The  Company  (incorporated  by

reference to Exhibit 10.2 of our current report on Form 8-K filed on July 28, 2011).

10.26 Lease Agreement dated as of February 7, 2012, between CPP II , LLC and The Company (incorporated by reference to Exhibit 10.40 included in our

Annual Report on Form 10-K filed March 27, 2012, for the fiscal year ended December 31, 2011).

10.27 Separation  Agreement  dated  February  15,  2012,  between  Evan  Myrianthopoulos  and  The  Company  (incorporated  by  reference  to  Exhibit  10.28

included in our Registration Statement on Form S-1 (File No. 333-184762) filed on November 5, 2012). **

10.28 First  Amendment  to  Separation  Agreement  dated  July  2,  2012,  between  Evan  Myrianthopoulos  and  The  Company  (incorporated  by  reference  to

Exhibit 10.29 included in our Registration Statement on Form S-1 (File No. 333-184762) filed on November 5, 2012). **

10.29 Amendment  No.  2  to  the  Collaboration  and  Supply  Agreement  between  the  Company,  Enteron  and  Sigma-Tau  dated  as  of  December  20,  2012

(incorporated by reference to Exhibit 10.1 of our current report on Form 8-K filed on December 27, 2012). †

10.30 Warrant dated December 20, 2012 and issued to Sigma-Tau to purchase 357,069 shares of the Company’s common stock (incorporated by reference to

Exhibit 10.2 of our current report on Form 8-K filed on December 27, 2012).

10.31 Warrant dated December 20, 2012 and issued to SINAF S.A. to purchase 87,804 shares of the Company’s common stock (incorporated by reference

to Exhibit 10.3 of our current report on Form 8-K filed on December 27, 2012).

10.32 Amendment to Exclusive License Agreement dated as of December 20, 2012 between Enteron and McDonald (incorporated by reference to Exhibit

10.4 of our current report on Form 8-K filed on December 27, 2012).

10.33 Amendment to Consulting Agreement dated as of December 20, 2012 between Enteron and McDonald (incorporated by reference to Exhibit 10.5 of

our current report on Form 8-K filed on December 27, 2012).

10.34 Warrant dated December 20, 2012 and issued to McDonald to purchase 280,000 shares of the Company’s common stock (incorporated by reference to

Exhibit 10.6 of our current report on Form 8-K filed on December 27, 2012).

23.1

Consent of EisnerAmper LLP. *

31.1

Certification of the Chief Executive Officer pursuant to Exchange Act rule 13(a)-14(a) (under Section 302 of the Sarbanes-Oxley Act of 2002). *

31.2

Certification of the Chief Financial Officer pursuant to Exchange Act rule 13(a)-14(a) (under Section 302 of the Sarbanes-Oxley Act of 2002). *

32.1

Certification of the Chief Executive Officer pursuant to Section 906 of the Sarbanes-Oxley Act of 2002. *

32.2

Certification of the Chief Financial Officer pursuant to Section 906 of the Sarbanes-Oxley Act of 2002. *

*
**
†

Filed herewith.
Indicates management contract or compensatory plan.
Portions of this exhibit have been omitted pursuant to a request for confidential treatment.

49

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
SIGNATURES

In accordance with Section 13 or 15(d) of the Exchange Act, the registrant caused this report to be signed on its behalf by the undersigned, thereunto duly
authorized.

SOLIGENIX, INC.

By:  /s/ Christopher J. Schaber
Christopher J. Schaber, PhD
Chief Executive Officer and President

Date: February 26, 2013

In accordance with the Exchange Act, this report has been signed below by the following persons on behalf of the registrant and in the capacities indicated
and on the dates indicated.

Name

/s/ Christopher J. Schaber
Christopher J. Schaber, PhD

/s/ Keith L. Brownlie
Keith L. Brownlie, CPA

/s/ Gregg A. Lapointe
Gregg A. Lapointe, CPA

/s/ Robert J. Rubin
Robert J. Rubin, MD

/s/ Jerome Zeldis
Jerome Zeldis, MD, PhD

/s/ Joseph M. Warusz
Joseph M. Warusz, CPA

Capacity
Chairman of the Board, Chief Executive Officer and President
(principal executive officer)

Date

February 26, 2013

Director

Director

Director

Director

Vice President of Finance, Acting Chief
Financial Officer and Corporate Secretary
(principal accounting officer)

50

February 26, 2013

February 26, 2013

February 26, 2013

February 26, 2013

February 26, 2013

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
SOLIGENIX, INC. AND SUBSIDIARIES
CONSOLIDATED FINANCIAL STATEMENTS

Table of Contents

Consolidated Balance Sheets as of December 31, 2012 and 2011
Consolidated Statements of Operations for the Years Ended December 31, 2012 and 2011
Consolidated Statements of Changes in Shareholders’ Equity for the Years Ended December 31, 2012 and  2011
Consolidated Statements of Cash Flows for the Years Ended December 31, 2012 and 2011
Notes to Consolidated Financial Statements
Report of Independent Registered Public Accounting Firm

F-1

Page

F-2
F-3
F-4
F-5
F-6
F-19

 
 
          
 
 
 
 
 
Soligenix, Inc. and Subsidiaries
Consolidated Balance Sheets
As of December 31,

Assets
Current assets:

Cash and cash equivalents
Grants receivable
Taxes receivable
Prepaid expenses

Total current assets
Office furniture and equipment, net
Intangible assets, net
Total assets

Liabilities and shareholders’ equity
Current liabilities:

Accounts payable
Accrued compensation

Total current liabilities
Commitments and contingencies
Shareholders’ equity:

Preferred stock; 250,000 shares authorized; none issued or outstanding
Common stock, $.001 par value; 50,000,000  and  20,000,000 shares  authorized in 2012 and 2011, respectively;
11,168,905 shares and 11,105,532 shares issued and outstanding in 2012 and 2011, respectively (1)

       Additional paid-in capital  (1)
       Accumulated deficit
Total shareholders’ equity
Total liabilities and shareholders’ equity

2012

2011

 $

 $

 $

 $

 $

 $

3,356,380 
339,308 
- 
140,693 
3,836,381 
12,995 
855,728 
4,705,104 

1,124,503 
29,495 
1,153,998 

5,996,668 
362,473 
574,157 
195,762 
7,129,060 
15,032 
1,079,566 
8,223,658 

1,303,555 
129,061 
1,432,616 

- 

- 

11,169 
125,820,318 
(122,280,381)   
3,551,106 
4,705,104 

 $

11,106 
124,897,309 
(118,117,373)
6,791,042 
8,223,658 

 $

The accompanying notes are an integral part of these consolidated financial statements.

(1)   Adjusted to reflect the reverse stock split of 1 for 20 effective February 1, 2012.

F-2

 
 
 
 
 
 
 
 
   
     
 
  
  
  
  
  
  
  
  
  
  
  
  
 
   
      
  
   
      
  
   
      
  
  
  
  
  
   
      
  
   
      
  
  
  
  
  
  
  
  
  
  
 
 
 
 
Soligenix, Inc. and Subsidiaries
Consolidated Statements of Operations
For the Years Ended December 31,

Revenues:
   License revenue
   Grant revenue

Total revenues
Cost of  grant revenues
        Gross profit

Operating expenses:
        Research and development
        General and administrative
Total operating expenses

Loss from operations

Other income:
        Interest income
Total other income
Net loss before income taxes
Income tax benefit
Net loss

Basic and diluted net loss per share
Basic and diluted weighted average common shares outstanding(1)

2012

2011

 $

- 
3,144,620 

 $

5,000,000 
2,662,822 

3,144,620 
(2,593,075)   
551,545 

7,662,822 
(2,108,228)
5,554,594 

2,609,241 
2,632,972 
5,242,213 

6,272,616 
2,242,173 
8,514,789 

(4,690,668)   

(2,960,195)

6,202     
6,202 
(4,684,466)   
521,458 
(4,163,008)  $

7,444 
7,444 
(2,952,751)
574,157 
(2,378,594)

(0.37)  $

(0.22)

11,136,484 

10,957,676 

 $

 $

The accompanying notes are an integral part of these consolidated financial statements.

(1)   Adjusted to reflect the reverse stock split of 1 for 20 effective February 1, 2012.

F-3

 
 
 
 
 
 
 
   
     
 
  
  
 
   
      
  
  
  
  
  
  
 
   
      
  
   
      
  
  
  
  
  
  
  
 
   
      
  
  
 
   
      
  
   
      
  
  
  
  
  
  
  
  
  
 
 
 
Soligenix, Inc. and Subsidiaries
Consolidated Statements of Changes in Shareholders’ Equity
For the Years Ended December 31, 2012 and 2011

Balance, December 31, 2010
Issuance of common stock from collaboration agreement

Fair value of common stock warrants to vendors
Issuance of common stock pursuant to Fusion equity line
Issuance of common stock to vendors
Issuance of common stock to employee as severance
Settlement of broker fees associated with 2010 financing
Issuance of common stock for option and warrant exercises
Stock-based compensation expense
Net loss
Balance, December 31, 2011

Issuance of common stock to vendors
Issuance of common stock to employee
Fair value of common stock warrants to vendors
Stock-based compensation expense
Net loss
Balance, December 31, 2012

Common Stock

Shares (1)

    Par Value (1)

Additional
Paid–In
    Capital (1)

    Accumulated      
Deficit

10,813,087 
66,890 

- 
90,789 
29,297 
25,625 
- 
79,844 
- 
- 
11,105,532 

 $

46,706 
16,667 

-     
- 
- 
11,168,905 

 $

10,813 
67 

- 
91 
29 
26 
- 
80 
- 
- 
11,106 

123,085,757 
399,933 

11,184 
354,909 
14,971 
20,474 
40,743 
253,533 
715,805 
- 
 $ 124,897,309 

46 
17 

- 
- 
11,169 

20,954 
9,983 
429,902 
462,170 
- 
 $ 125,820,318 

(115,738,779)   

- 

- 
- 
- 
- 
- 
- 
- 

(2,378,594)   
 $ (118,117,373)  $

- 
- 
- 
- 

(4,163,008)   
 $ (122,280,381)  $

Total
7,357,791 
400,000 

11,184 
355,000 
15,000 
20,500 
40,743 
253,613 
715,805 
(2,378,594)
6,791,042 

21,000 
10,000 
429,902 
462,170 
(4,163,008)
3,551,106 

The accompanying notes are an integral part of these consolidated financial statements.

(1)   Adjusted to reflect the reverse stock split of 1 for 20 effective February 1, 2012.

F-4

 
 
 
   
 
 
 
   
   
 
  
  
  
  
  
  
  
  
  
 
   
      
      
      
      
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
 
   
      
      
      
      
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
 
 
Soligenix, Inc. and Subsidiaries
Consolidated Statements of Cash Flows
For the Years Ended December 31,

Operating activities:
Net loss
Adjustments to reconcile net loss to net cash used in operating activities:
    Amortization and depreciation
    Common stock issued for amended license agreement
    Common stock issued to employee
    Common stock issued in exchange for services
    Warrants replaced in exchange for renegotiated agreement
    Stock-based compensation
    Capitalized patent write-off
Change in operating assets and liabilities:
    Grants receivable
    Taxes receivable
    Prepaid expenses
    Accounts payable
    Accrued compensation
Total adjustments

    Net cash used in operating activities

Investing activities:
 Acquisition of intangible assets
 Purchase of office equipment
    Net cash used in investing activities

Financing activities:
Net proceeds from sale of common stock
Settlement of broker fees associated with 2010 financing
Proceeds from sale of common stock pursuant to equity line
Proceeds from exercise of options and warrants
    Net cash provided by financing activities

Net decrease in cash and cash equivalents
    Cash and cash equivalents at beginning of period
    Cash and cash equivalents at end of period

Supplemental information:

Cash paid for state income taxes

2012

2011

 $

(4,163,008)  $

(2,378,594)

230,630 
- 
10,000 
21,000 
429,902 
462,170 
- 

226,027 
400,000 
20,500 
26,184 
- 
715,805 
88,727 

23,165 
574,157 
55,069 
(179,053)    
(99,565)    

1,527,475 
(2,635,533)   

(241,686)
(322,293)
(8,268)
(370,620)
(107,520) 
426,856 
(1,951,738)

- 

(4,755)   
(4,755)   

(151,086)
(1,578)
(152,664)

- 
- 
- 
- 
- 

- 
40,743 
355,000 
253,613 
649,356 

(2,640,288)   
5,996,668 
3,356,380 

 $

(1,455,046)
7,451,714 
5,996,668 

2,730 

 $

2,750 

 $

 $

The accompanying notes are an integral part of these consolidated financial statements.

F-5

 
 
 
 
 
   
 
 
  
 
  
   
      
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
   
      
  
  
  
  
  
  
  
  
  
  
  
  
 
   
      
  
   
      
  
  
  
  
  
 
   
      
  
   
      
  
  
  
  
  
  
  
  
  
  
  
 
   
      
  
  
  
  
   
     
 
 
 
 
Soligenix, Inc. and Subsidiaries
Notes to Consolidated Financial Statements

Note 1. Nature of Business

Basis of Presentation

Soligenix, Inc. (the “Company”) is a development stage biopharmaceutical company that was incorporated in 1987 and is focused on developing products to
treat  the  life-threatening  side  effects  of  cancer  treatments  and  serious  gastrointestinal  diseases  where  there  remains  an  unmet  medical  need,  as  well  as
developing several biodefense vaccines and therapeutics. The Company maintains two active business segments: BioTherapeutics and Vaccines/BioDefense.
Soligenix’s  BioTherapeutics  business  segment  is  developing  proprietary  formulations  of  oral  beclomethasone  17,21-dipropionate  (“BDP”)  for  the
prevention/treatment of gastrointestinal (“GI”) disorders characterized by severe inflammation, including pediatric Crohn’s disease (SGX203), acute radiation
enteritis (SGX201) and chronic Graft-versus-Host disease (orBec®), as well as developing our novel innate defense regulator (“IDR”) technology (SGX942)
for  the  treatment  of  oral  mucositis.  On  September  15,  2011  the  Company’s  confirmatory  Phase  3  clinical  trial  for  orBec®  in  the  treatment  of  acute
gastrointestinal Graft-versus-Host disease (“GI GVHD”) was stopped at the recommendation of an independent Data Safety Monitoring Board (“DSMB”).
Our  Vaccines/BioDefense  business  segment  includes  RiVax™,  our  ricin  toxin  vaccine,  and  VeloThrax™,  our  anthrax  vaccine,  and  OrbeShield™,  our
gastrointestinal acute radiation syndrome (“GI ARS”) program. The advanced development of these programs will be supported by our existing and on-going
government grants, including our National Institutes of Health (“NIH”) grant for our heat stabilization technology ThermoVax™.

The Company generates revenues primarily from the NIH under four active grants.

The  Company  is  subject  to  risks  common  to  companies  in  the  biotechnology  industry  including,  but  not  limited  to,  development  of  new  technological
innovations, dependence on key personnel, protections of proprietary technology, compliance with FDA regulations, litigation, and product liability.

Liquidity

As of December 31, 2012, the Company had cash and cash equivalents of $3,356,380 as compared to $5,996,668 as of December 31, 2011, representing a
decrease of $2,640,288 or 44%. As of December 31, 2012, the Company had working capital of $2,682,383 as compared to working capital of $5,696,444 as
of December 31, 2011, representing a decrease of $3,014,061 or 53%. The decrease in working capital was primarily the result of the cash used in operating
and investing activities over the period. For the year ended December 31, 2012, the Company’s cash used in operating activities was $2,635,533 as compared
to  $1,951,738  for  the  same  period  in  2011,  representing  an  increase  of  $683,795.  Excluding  the  proceeds  of  $5,000,000  received  from  Sigma-Tau  for  the
European territory license in the third quarter of 2011, for the year ended December 31, 2012, the Company experienced a decrease in cash used in operating
activities of $4,316,205. This decrease was attributable to the decrease in research and development expenses related to the 2011 orBec® Phase 3 clinical trial.
Based  on  the  Company’s  current  rate  of  cash  outflows,  cash  on  hand  and  proceeds  from  its  grant  programs,  and  proceeds  from  the  State  of  New  Jersey
Technology Business Tax Certificate Transfer Program, management believes that its current cash will be sufficient to meet the anticipated cash needs for
working capital and capital expenditures into the second quarter of 2014.

Management’s business plan can be outlined as follows:

● Initiate a Phase 1/2 clinical trial of oral BDP, known as SGX203 for the treatment of pediatric Crohn’s disease;
● Initiate a Phase 2 clinical trial of SGX942 for the treatment of oral mucositis in head and neck cancer;
● Evaluate  the  effectiveness  of  oral  BDP  in  other  therapeutic  indications  involving  inflammatory  conditions  of  the  GI  tract  such  as  prevention  of  acute

radiation enteritis, prevention of acute radiation syndrome, and treatment of chronic GVHD;

F-6

 
 
 
 
 
 
● Develop RiVax™ and VeloThrax™ in combination with our proprietary vaccine heat stabilization technology, known as ThermoVax™, to develop new

heat stable vaccines in biodefense and infectious diseases with the potential to collaborate and/or partner with other companies in these areas;

● Continue  to  apply  for  and  secure  additional  government  funding  for  each  of  our  BioTherapeutics  and  Vaccines/BioDefense  programs  through  grants,

contracts and/or procurements; and

● Explore other business development and merger/acquisition strategies.

The Company’s plans with respect to its liquidity management include, but are not limited to the following:

● The Company has approximately $3.8 million in active grant funding still available to support its associated research programs through 2014 and beyond.

The Company plans to submit additional grant applications for further support of its programs with various funding agencies.

● The Company has continued to use equity instruments to provide a portion of the compensation due to vendors and collaboration partners and expects to

continue to do so for the foreseeable future.

● The Company will pursue Net Operating Losses (“NOLs”) sales in the State of New Jersey pursuant to its Technology Business Tax Certificate Transfer
Program. Based on the receipt of $521,458 in proceeds pursuant to NOLs sales in 2012, the Company expects to participate in the program during 2013
and beyond; and

● The  Company  may  seek  additional  capital  in  the  private  and/or  public  equity  markets  to  continue  its  operations,  respond  to  competitive  pressures,
develop  new  products  and  services,  and  to  support  new  strategic  partnerships.  The  Company  is  currently  evaluating  additional  equity  financing
opportunities and may execute them when appropriate. However, there can be no assurances that the Company can consummate such a transaction, or
consummate a transaction at favorable pricing.

Reverse Stock Split

On February 1, 2012, the Company completed a reverse stock split of its issued and outstanding shares of common stock at a ratio of 1-for-20, whereby, once
effective,  every  20  shares  of  its  common  stock  was  exchanged  for  one  share  of  its  common  stock.  Its  common  stock  began  trading  on  the  OTCBB  on  a
reverse split basis at the market opening on February 2, 2012. All share and per share data reflects this reverse stock split.

Note 2. Summary of Significant Accounting Policies

Principles of Consolidation

The  consolidated  financial  statements  include  Soligenix,  Inc.,  and  its  wholly  and  majority  owned  subsidiaries.  All  significant  intercompany  accounts  and
transactions have been eliminated as a result of consolidation.

Operating Segments

Operating segments are defined as components of an enterprise about which separate financial information is available that is evaluated on a regular basis by
the  chief  operating  decision  maker,  or  decision  making  group,  in  deciding  how  to  allocate  resources  to  an  individual  segment  and  in  assessing  the
performance of the segment. The Company divides its operations into two operating segments: BioTherapeutics and Vaccines/BioDefense.

Grants Receivable

Grants receivable consist of unbilled amounts due from various grants from the NIH for costs incurred prior to the period end under reimbursement contracts.
The amounts were billed to the NIH in the month subsequent to period end and collected shortly thereafter. Accordingly, no allowance for doubtful amounts
has been established. If amounts become uncollectible, they are charged to operations.

F-7

 
 
 
 
Intangible Assets

One of the most significant estimates or judgments that the Company makes is whether to capitalize or expense patent and license costs. The Company makes
this  judgment  based  on  whether  the  technology  has  alternative  future  uses,  as  defined  in  Financial  Accounting  Standards  Board  (“FASB”)  Accounting
Standards Codification (“ASC”) 730, Research and Development. Based on this consideration, the Company capitalizes payments made to legal firms that are
engaged in filing and protecting rights to intellectual property and rights for its current products in both the domestic and international markets. The Company
believes that patent rights are one of its most valuable assets. Patents and patent applications are a key component of intellectual property, especially in the
early  stage  of  product  development,  as  their  purchase  and  maintenance  gives  the  Company  access  to  key  product  development  rights  from  Soligenix’s
academic and industrial partners. These rights can also be sold or sub-licensed as part of its strategy to partner its products at each stage of development as the
intangible  assets  have  alternative  future  use.  The  legal  costs  incurred  for  these  patents  consist  of  work  associated  with  filing  new  patents  and  perhaps
extending the lives of the patents. The Company capitalizes such costs and amortizes intangibles over their expected useful life – generally a period of 11 to
16 years.

The Company did not  incur  any  capitalized  patent  related  costs  during  the  year  ended  December  31,  2012.  The  Company  capitalized  $151,086  in  patent
related costs during the year ended December 31, 2011.

During the year ended December 31, 2011, the Company incurred an $88,727 patent write off cost due to abandonment of patents related to Azathioprine.
These costs are reflected in research and development expense in the consolidated statement of operations.

Impairment of Long-Lived Assets

Office furniture and equipment and intangible assets are evaluated and reviewed for impairment whenever events or changes in circumstances indicate that
the carrying amount may not be recoverable. The Company recognizes impairment of long-lived assets in the event the net book value of such assets exceeds
the estimated future undiscounted cash flows attributable to such assets. If the sum of the expected undiscounted cash flows is less than the carrying value of
the related asset or group of assets, a loss is recognized for the difference between the fair value and the carrying value of the related asset or group of assets.
Such analyses necessarily involve significant judgment.

The Company did not record any impairment of long-lived assets for the years ended December 31, 2012 or 2011, except for the patent write-offs discussed in
Note 3.

Fair Value of Financial Instruments

Accounting principles generally accepted in the U.S. require that fair values be disclosed for the Company’s financial instruments. The carrying amounts of
the Company’s financial instruments, which include grants receivable and current liabilities, are considered to be representative of their respective fair values.

Revenue Recognition

Principally the Company’s revenues are generated from NIH grants and revenues from licensing activities and the achievement of licensing milestones (in
prior periods). Recording of revenue is applied in accordance with FASB ASC 605, Revenue Recognition, ASC 605-25 and/or Accounting Standard Update,
ASU, 2009-13, Revenue Recognition – Multiple Element Arrangements. The revenue from NIH grants is based upon subcontractor costs and internal costs
incurred that are specifically covered by the grants, plus a facilities and administrative rate that provides funding for overhead expenses. These revenues are
recognized when expenses have been incurred by subcontractors or when the Company incurs internal expenses that are related to the grant.

Licensing and associated milestone revenues are recorded when earned. On September 15, 2011, as a result of stopping the confirmatory Phase 3 clinical trial
as well as no future clinical development or performance obligations associated with the Sigma-Tau Agreement, the Company recognized license revenue of
$5,000,000 relating to the execution of an expanded license agreement with Sigma-Tau for the European territory.

F-8

 
 
 
 
Research and Development Costs

Research  and  development  costs  are  charged  to  expense  when  incurred  in  accordance  with  FASB  ASC  730,  Research  and  Development.  Research  and
development  includes  costs  such  as  clinical  trial  expenses,  contracted  research  and  license  agreement  fees  with  no  alternative  future  use,  supplies  and
materials,  salaries  stock  based  compensation,  employee  benefits,  equipment  depreciation  and  allocation  of  various  corporate  costs.  Purchased  in-process
research and development expense represents the value assigned or paid for acquired research and development for which there is no alternative future use as
of the date of acquisition.

Stock-Based Compensation

From time to time, the Company issues restricted shares of common stock to vendors and consultants as compensation for services performed. Stock-based
compensation expense recognized during the period is based on the fair value of the portion of share-based payment awards that is ultimately expected to vest
during the period. Typically these instruments vest upon issuance and therefore the entire stock compensation expense is recognized upon issuance to the
vendors and/or consultants.

Stock  options  are  issued  with  an  exercise  price  equal  to  the  market  price  on  the  date  of  issuance.  Stock  options  issued  to  directors  upon  re-election  vest
quarterly for a period of one year (new director issuances are fully vested upon issuance). Stock options issued to employees vest 25% immediately as of the
grant date, then 25% each subsequent year for a period of three years. Stock options vest over each three month period from the date of issuance to the end of
the three year period. These options have a ten year life for as long as the individuals remain employees or directors. In general, when an employee or director
terminates their position the options will expire within three months, unless otherwise extended by the Board.

Stock  compensation  expense  for  options,  warrants  and  shares  of  common  stock  granted  to  non-employees  has  been  determined  in  accordance  with  FASB
ASC  718,  Stock  Compensation,  and  FASB  ASC  505-50,  Equity-Based  Payments  to  Non-Employees,  and  represents  the  fair  value  of  the  consideration
received, or the fair value of the equity instruments issued, whichever may be more reliably measured. For options that vest over future periods, the fair value
of options granted to non-employee directors is amortized as the options vest. The option’s price is re-measured using the Black-Scholes model at the end of
each three month reporting period.

The  fair  value  of  options  in  accordance  with  FASB  ASC  718,  Stock Compensation,  was  estimated  using  the  Black-Scholes  option-pricing  model  and  the
following assumptions:

●
●
●
●
●

a dividend yield of 0%;
an expected life of 4 years;
volatilities of 160% for 2012 and ranging from 123% to 160% for 2011;
forfeitures at a rate of 12%; and
risk-free interest rates of 0.51% for 2012 and 0.69% to 1.47% in 2011.

The fair value of each option grant made during 2012 and 2011 was estimated on the date of each grant using the Black-Scholes option pricing model and
amortized ratably over the option’s vesting periods, which approximates the service period.

Income Taxes

Deferred tax assets and liabilities are recognized for the future tax consequences attributable to differences between the financial statement carrying amounts
of existing assets and liabilities and their respective tax bases. A valuation allowance is established when it is more likely than not that all or a portion of a
deferred  tax  asset  will  not  be  realized.  A  review  of  all  available  positive  and  negative  evidence  is  considered,  including  the  Company’s  current  and  past
performance,  the  market  environment  in  which  the  Company  operates,  the  utilization  of  past  tax  credits,  and  the  length  of  carryback  and  carryforward
periods.  Deferred  tax  assets  and  liabilities  are  measured  utilizing  tax  rates  expected  to  apply  to  taxable  income  in  the  years  in  which  those  temporary
differences  are  expected  to  be  recovered  or  settled.  No  current  or  deferred  income  taxes  have  been  provided  through  December  31,  2012  due  to  the  net
operating losses incurred by the Company since its inception. The Company recognizes accrued interest and penalties associated with uncertain tax positions,
if  any,  as  part  of  income  tax  expense.  There  were  no  tax  related  interest  and  penalties  recorded  for  2012  and  2011.  Additionally,  the  Company  has  not
recorded an asset for unrecognized tax benefits or a liability for uncertain tax positions at December 31, 2012 and 2011. Tax years beginning in 2009 for
federal purposes are generally subject to examination by taxing authorities, although net operating losses from those years are subject to examinations and
adjustments for at least three years following the year in which the tax attributes are utilized.

F-9

 
 
 
 
Earnings Per Share

Basic earnings per share (“EPS”) excludes dilution and is computed by dividing income (loss) available to common stockholders by the weighted-average
number  of  common  shares  outstanding  for  the  period.  Diluted  EPS  reflects  the  potential  dilution  that  could  occur  if  securities  or  other  contracts  to  issue
common stock were exercised or converted into common stock or resulted in the issuance of common stock that shared in the earnings of the entity. Since
there  is  a  significant  number  of  options  and  warrants  outstanding,  fluctuations  in  the  actual  market  price  can  have  a  variety  of  results  for  each  period
presented. No options and warrants were included in the 2012 and 2011 computations of diluted earnings per share because their effect would be anti-dilutive
as a result of losses or options and warrants for which the strike price exceeds the quoted market value at period end.

Basic & Diluted EPS

  $

(4,163,008)    

Net Loss

For the Year Ended
December 31, 2012
Shares
11,136,484    $

EPS

Net Loss

(0.37)   $

(2,378,594)    

For the Year Ended
December 31, 2011
Shares
10,957,676    $

EPS

(0.22)

Shares issuable upon the exercise of options and warrants outstanding at December 31, 2012 and 2011 were 1,457,724 and 1,544,242 shares issuable upon the
exercise  of  options,  and  2,843,338  and  2,701,569  shares  issuable  upon  the  exercise  of  warrants,  respectively.  The  weighted  average  exercise  price  of  the
Company’s stock options and warrants outstanding at December 31, 2012 were $3.20 and $3.13 per share, respectively. No options or warrants were included
in the 2012 and 2011 computations of diluted earnings per share because their effect would be anti-dilutive as a result of losses in each of those years.

Use of Estimates and Assumptions

The preparation of financial statements in conformity with accounting principles generally accepted in the U.S. requires management to make estimates and
assumptions such as the fair value of warrants, stock options and recovery of the useful life of intangibles that affect the reported amounts in the financial
statements and accompanying notes. Actual results could differ from those estimates.

F-10

 
 
 
 
   
 
 
 
   
 
 
 
   
   
   
   
   
 
 
 
Note 3. Intangible Assets

The following is a summary of intangible assets which consists of licenses and patents:

December 31, 2012
Licenses
Patents
Total

December 31, 2011
Licenses
Patents
Total

Weighted
Average
Amortization
period
(years)

Cost

Accumulated
Amortization    

Net Book
Value

7.72
3.3
4.2

8.72
3.3
4.4

 $

 $

 $

 $

462,234 
1,893,185 
2,355,419 

462,234 
1,893,185 
2,355,419 

 $

 $

 $

 $

252,019 
1,247,672 
1,499,691 

224,708 
1,051,145 
1,275,853 

 $

 $

 $

 $

210,215 
645,513 
855,728 

237,526 
842,040 
1,079,566 

Amortization expense was $223,838 and $218,782 in 2012 and 2011, respectively.

During the year ended December 31, 2011, the Company incurred an $88,727 patent write off cost due to abandonment of patents related to Azathioprine.
These costs are reflected in research and development expense in the consolidated statement of operations.

Based on the balance of licenses and patents at December 31, 2012, the annual amortization expense for each of the succeeding five years is estimated to be
as follows:

Year
2013
2014
2015
2016
2017

  $
  $
  $
  $
  $

Amortization
Expense

222,800 
222,800 
173,800 
61,800 
20,800 

License fees and royalty payments are expensed annually as incurred as the Company does not attribute any future benefits other than within that period.

Note 4. Income Taxes

Deferred tax assets consisted of the following as of December 31:

Net operating loss carry forwards
Orphan drug and research and development credit carry forwards
Other
Total
Valuation allowance
Net deferred tax assets

 $

 $

 $

2012
27,872,000 
3,068,000 
1,443,000 
32,383,000 
(32,383,000)   
 $

- 

2011
26,001,000 
2,818,000 
1,615,000 
30,434,000 
(30,434,000)
- 

At December 31, 2012, the Company had NOL carry forwards of approximately $79,463,000 for federal tax purposes and approximately $9,498,000 of New
Jersey NOL carry forwards remaining after the sale of unused net operating loss carry forwards, portions of which are currently expiring each year through
2032. In addition, the Company has $3,068,000 of various tax credits that expire from 2013 to 2032. The Company may be able to utilize their NOLs to
reduce future federal and state income tax liabilities. However, these NOLs are subject to various limitations under Internal Revenue Code (“IRC”) Section
382. IRC Section 382 limits the use of NOLs to the extent there has been an ownership change of more than 50 percentage points. In addition, the NOL carry
forwards are subject to examination by the taxing authority and could be adjusted or disallowed due to such exams. Although the Company has not undergone
an IRC Section 382 analysis, it is likely that the utilization of the NOLs may be substantially limited.

F-11

 
 
   
   
 
 
   
 
 
 
 
     
     
     
 
   
 
   
 
  
  
  
   
 
     
      
      
  
   
 
   
 
  
  
  
   
 
 
 
 
 
 
 
 
  
  
  
  
  
  
  
 
 
The  Company  and  one  or  more  of  its  subsidiaries  files  income  tax  returns  in  the  U.S.  Federal  jurisdiction,  and  various  state  and  local  jurisdictions.  The
Company is no longer subject to Federal income tax assessment for years before 2008 for Federal and 2007 for New Jersey income tax assessment. However,
since the Company has incurred net operating losses in every tax year since inception, all its income tax returns are subject to examination and adjustments by
the Internal Revenue Service for at least three years following the year in which the tax attributes are utilized.

The net change in the valuation allowance for the years ended December 31, 2012 and December 31, 2011 was an increase of approximately $1,949,000 and
a  decrease  of  approximately  $1,115,000,  respectively,  resulting  primarily  from  net  operating  losses  expiring  and  generated.  As  a  result  of  the  Company’s
continuing tax losses, the Company has recorded a full valuation allowance against a net deferred tax asset.

Reconciliations of the difference between income tax benefit computed at the federal and state statutory tax rates and the provision for income tax benefit for
the years ended December 31, 2012 and 2011 was as follows:

Income tax loss at federal statutory rate
State tax benefits, plus sale of NJ NOLs, net of federal benefit
           Subtotal
Valuation allowance
Income tax benefit

2012

2011

(34.00) %   

(6.00)
(40.00)
28.87 
(11.13) %   

(34.00) %
(6.00)
(40.00)
20.56 
(19.44) %

During the years ended December 31, 2012 and 2011, in accordance with the State of New Jersey’s Technology Business Tax Certificate Program, which
allowed certain high technology and biotechnology companies to sell unused net operating loss carryforwards to other New Jersey-based corporate taxpayers
based in New Jersey, the Company sold New Jersey net operating loss carryforwards, resulting in the recognition of $521,458 and $574,157 of income tax
benefit, net of transaction costs, respectively. There can be no assurance as to the continuation or magnitude of this program in future.

The Company follows FASB ASC 740-10, Uncertainty in Income Taxes. This standard prescribes a recognition threshold and measurement attribute for the
financial statement recognition and measurement of a tax position taken or expected to be taken in a tax return. The Company did not have any unrecognized
tax benefits or a liability for uncertain tax positions at December 31, 2012 and 2011. The Company does not expect to have any unrecognized tax benefits
within the next twelve months. The Company recognizes accrued interest and penalties associated with uncertain tax positions, if any, as part of income tax
expense. There were no tax related interest and penalties recorded for 2012 and 2011.

Note 5. Shareholders’ Equity

Preferred Stock

The Company has 250,000 shares of preferred stock authorized, none of which are issued or outstanding.

F-12

 
 
 
 
 
 
 
 
  
  
  
  
  
  
  
  
 
 
 
 
Common Stock

The following items represent transactions in the Company’s common stock for the year ended December 31, 2012:

●  In January 2012, the Company issued 16,667 shares of common stock as part of an employee’s 2011 bonus from the Company.
●  In four separate transactions, the Company issued 46,706 shares of common stock as part of consideration for services performed.

The following items represent transactions in the Company’s common stock for the year ended December 31, 2011:

●  In sixteen separate transactions during 2011, the Company issued an aggregate of 90,789 shares of common stock under its existing Fusion Capital
equity  facility.  The  Company  received  an  aggregate  of  $355,000  in  proceeds  which  approximated  the  shares’  fair  market  value  on  the  date  of
issuance.

●  As a result of stock option exercises, 79,844 shares were issued during 2011. The Company received an aggregate of $253,613 in proceeds from

these exercises.

●  As  a  result  of  granting  Sigma-Tau  an  exclusive  license  to  commercialize  orBec®  in  the  European  territory,  the  Company  amended  the  license
agreement with Dr. George McDonald and issued 66,890 shares of Company stock in lieu of $400,000 cash obligation. Stock price used for share
calculation was $5.98, closing price at July 29, 2011.

●  In December 2011, the Company issued 25,625 shares of common stock as part of an employee’s severance from the Company.
●  In December 2011, the Company issued 29,297 shares of common stock as part of consideration for services performed.

Warrants

During 2012, the Company issued warrants to purchase 50,000 shares of common stock to a consultant in exchange for services. Additionally, in December
2012, the Company replaced previously issued warrants to purchase 724,873 shares of common stock for new warrants. These new warrants were issued to
Sigma Tau upon the Company reacquiring the rights to orBec® and to Dr. George McDonald upon the renegotiation of our orBec® license agreement. During
2011, the Company issued warrants to purchase 4,750 shares of common stock to consultants in exchange for their services.

Expense charges of $429,902 and $11,184 were recorded during the years ended December 31, 2012 and 2011, respectively, as a result of these issuances
which represented the estimated fair value of services performed and renegotiated agreements with Sigma-Tau and Dr. McDonald pertaining to the rights of
orBec®.

Equity Line

In February 2008, the Company entered into a common stock purchase agreement with Fusion Capital Fund II, LLC (“Fusion Capital”). The Fusion Capital
equity  facility  allows  the  Company  to  require  Fusion  Capital  to  purchase  between  $80,000  and  $1.0  million  of  the  Company’s  common  stock  every  two
business days, up to an aggregate of $8.0 million over approximately a 25-month period depending on certain conditions, including the quoted market price of
the Company’s common stock on such date. As part of the agreement, the Company issued Fusion Capital 63,750 shares of common stock as a commitment
fee.  In  connection  with  the  execution  of  the  common  stock  purchase  agreement,  Fusion  Capital  made  an  initial  purchase  of  138,889  common  shares  and
received a four year warrant to purchase 69,445 shares of common stock for $4.40 per share, representing an aggregate price of $500,000. The Company
issued an additional 3,750 shares of common stock as a commitment fee in connection with this $500,000 purchase. 

If  the  Company’s  stock  price  exceeds  $3.00,  then  the  amount  required  to  be  purchased  may  be  increased  under  certain  conditions  as  the  price  of  the
Company’s common stock increases. The Company cannot require Fusion Capital to purchase any shares of the Company’s common stock on any trading
days  that  the  market  price  of  the  Company’s  common  stock  is  less  than  $2.00  per  share.  Furthermore,  for  each  additional  purchase  by  Fusion,  additional
commitment shares in commensurate amounts up to a total of 63,750 shares will be issued based upon the relative proportion of purchases compared to the
total commitment maximum of 925,000 shares. The total issuance of common stock related to commitment shares for 2008 was 68,456 shares, which were
issued to Fusion Capital and consisted of 63,750 shares as a commitment fee, 3,750 shares as a commitment fee for the $500,000 invested, and 957 shares for
the commitment fee shares on the equity line draws totaling $127,500.

F-13

 
 
 
 
 
During the year ended December 31, 2011, the Company issued 90,789 shares of common stock under the Fusion Capital equity facility. In connection with
these issuances, the Company received $355,000 in proceeds which approximated the shares’ fair market value on the dates of issuance.

The Fusion equity line expired in October 2011.

Note 6. Stock Option Plans and Warrants to Purchase Common Stock

Stock Option Plans

The Amended and Restated 1995 Omnibus Plan was replaced by the 2005 Equity Incentive Plan and is divided into four separate equity programs:

1)  the  Discretionary  Option  Grant  Program,  under  which  eligible  persons  may,  at  the  discretion  of  the  Plan  Administrator,  be  granted  options  to

purchase shares of common stock,

2)  the Salary Investment Option Grant Program, under which eligible employees may elect to have a portion of their base salary invested each year in

options to purchase shares of common stock,

3)  the Automatic Option Grant Program, under which eligible nonemployee Board members will automatically receive options at periodic intervals to

purchase shares of common stock,

4)  the Director Fee Option Grant Program, under which non-employee Board members may elect to have all, or any portion, of their annual retainer

fee otherwise payable in cash applied to a special option grant.

The 2005 Equity Incentive Plan (“2005 Plan”) is divided into four separate equity programs:

1)  the Discretionary Option Grant Program, under which eligible persons may, at the discretion of the Plan Administrator, be issued common stock or

granted options to purchase shares of common stock,

2)  the Salary Investment Option Grant Program, under which eligible employees may elect to have a portion of their base salary invested each year in

options to purchase shares of common stock,

3)  the Automatic Option Grant Program, under which eligible nonemployee Board members will automatically receive options at periodic intervals to

purchase shares of common stock, and

4)  the Director Fee Option Grant Program, under which non-employee Board members may elect to have all, or any portion, of their annual retainer

fee otherwise payable in cash applied to a special option grant.

In addition, under the 2005 Plan, the Board may elect to pay certain consultants, directors, and employees in common stock. The 2005 Plan was amended in
September 2007 to increase the number of options available under the plan to 1,000,000 and again in 2010 to increase the number of shares under the plan to
1,750,000.

The table below only accounts for transactions occurring as part of the amended 2005 Equity Incentive Plan.

Shares available for grant at beginning of year
  Increase in shares available for the plan
  Options granted
  Options forfeited or expired

Shares available for grant at end of year

F-14

December 31,

2012

2011

60,692 
- 

(100,000)   
169,019 

396,223 
- 
(523,344)
187,813 

129,711 

60,692 

 
 
        
 
 
 
 
 
   
 
  
  
  
  
  
  
  
 
   
  
  
  
  
  
 
The total option activity for the 1995 plan and the amended 2005 plan for the years ended December 31, 2012 and 2011 was as follows:

Balance at December 31, 2010
  Granted
  Exercised
  Forfeited
Balance at December 31, 2011

  Granted
  Exercised
  Forfeited
Balance at December 31, 2012

Weighted
Average
Options
Exercise Price  
4.84 
1.68 
3.18 
1.88 
3.75 

Options

1,308,056 
523,344 
(79,844)   
(207,314)   
 $
1,544,242 

100,000 
- 

(186,518)   
 $
1,457,724 

0.30 
- 
6.22 
3.19 

The Company awarded 100,000 and 523,344 stock options to new employees and new and existing Board members during 2012 and 2011, respectively. The
2012 grants were issued to Board members on June 21, 2012 under the 2005 Equity Incentive Plan.

The weighted-average exercise price, by price range, for outstanding options to purchase common stock at December 31, 2012 was:

Price
Range
$0.30-$2.20
$2.80-$4.10
$4.64-$8.60
$9.40-$11.60
$18.00-$25.60
Total

Weighted
Average
Remaining
Contractual
Life in Years    
7.9
8.1
5.9
4.1
0.7
7.0

Outstanding
 Options

Exercisable
 Options

738,300 
186,674 
426,500 
97,500 
8,750 
1,457,724 

542,050 
151,283 
391,891 
97,500 
8,750 
1,191,474 

The  Company’s  share-based  compensation  for  the  years  ended  December  31,  2012  and  2011  was  $462,170  and  $715,805,  respectively.  At  December  31,
2012, the total compensation cost for stock options not yet recognized was approximately $245,000 and will be expensed over the next three years.

F-15

 
 
 
 
 
   
  
  
  
  
  
  
  
  
  
  
  
  
  
 
 
   
 
   
 
  
  
   
 
  
  
   
 
  
  
   
 
  
  
   
 
  
  
   
 
  
  
 
 
Warrants to Purchase Common stock

Warrant activity for the years ended December 31, 2012 and 2011 was as follows:

Balance at December 31, 2010

  Granted
  Exercised
  Expired/Cancelled
Balance at December 31, 2011

  Granted
  Exercised
  Expired/Cancelled
Balance at December 31, 2012

Weighted
Average
Warrant
Exercise Price  
4.40 
 $

3.85 
- 
0.66 
4.40 

0.56 
- 
5.40 
3.13 

  Warrants

2,703,819 

4,750 
- 

(7,000)   
 $

2,701,569 

774,873 
- 

(633,104)   
 $
2,843,338 

During  2012,  the  Company  issued  warrants  to  purchase  50,000  shares  of  common  stock,  with  an  exercise  price  of  $0.68,  to  a  consultant  in  exchange  for
services, Additional warrants to purchase 724,873 were issued relating to reacquiring the rights to orBec® and renegotiation of our orBec® license agreement,
with  exercise  prices  ranging  from  $0.53  to  $0.58.  Expense  charges  of  $429,902  were  recorded  to  reflect  these  issuances.  Warrants  of  633,104  had  either
expired or were cancelled by the Company with exercise prices ranging from $2.20 to $5.60.

The weighted-average exercise price, by price range, for outstanding warrants at December 31, 2010 was:

Price
Range
$.53-$2.00
$2.80-$3.96
$5.00-$6.06
Total

Weighted
Average
Remaining
Contractual
Life in Years    
5.0
1.1
2.2
2.5

Outstanding
 Warrants

Exercisable
Warrants

777,373 
1,103,202 
962,763 
2,843,338 

777,373 
1,103,202 
962,763 
2,843,338 

During 2013, warrants to purchase approximately 1,250 shares of the Company’s common stock will expire.

Note 7. Concentrations

At  December  31,  2012  and  2011,  the  Company  had  deposits  in  major  financial  institutions  that  exceeded  the  amount  under  protection  by  the  Securities
Investor Protection Corporation (“SIPC”). Currently, the Company is covered up to $1,000,000 by the SIPC. The excess amounts at December 31, 2012 and
2011 were $2,356,380 and $4,996,668, respectively.

Note 8. Commitments and Contingencies

The Company has commitments of approximately $425,000 at December 31, 2012 for several licensing agreements with consultants and universities, which
upon clinical or commercialization success may require the payment of milestones and/or royalties if and when achieved. However, there can be no assurance
that clinical or commercialization success will occur.

On  February  7,  2012,  the  Company  entered  into  a  lease  agreement  through  March  31,  2015  for  existing  office  space.  The  rent  for  the  first  12  months  is
approximately $8,000 per month, or approximately $18.25 per square foot. This rent increases to approximately $8,310 per month, or approximately $19.00
per square foot, for the remaining 24 months.

F-16

 
 
 
 
   
  
  
  
  
  
  
  
  
  
  
  
  
  
 
 
 
 
   
 
   
 
  
  
   
 
  
  
   
 
  
  
   
 
  
  
 
In  February  2007,  the  Company’s  Board  of  Directors  authorized  the  issuance  of  the  following  number  of  shares  to  each  of  Dr.  Schaber  and  Dr.  Brey
immediately prior to the completion of a transaction, or series or a combination of related transactions negotiated by its Board of Directors whereby, directly
or  indirectly,  a  majority  of  its  capital  stock  or  a  majority  of  its  assets  are  transferred  from  the  Company  and/or  its  stockholders  to  a  third  party:  50,000
common shares to Dr. Schaber and 10,000 common shares to Dr. Brey. The amended agreement with Dr. Schaber includes its obligation to issue such shares
if such event occurs.

Employees with employment contracts have severance agreements that will provide separation benefits from the Company if they are involuntarily separated
from employment. On February 15, 2012, Mr. Myrianthopoulos’ employment agreement was terminated. The Company recognized an expense of $95,625 at
March 31, 2012 and at December 31, 2012 there are no severance and healthcare benefits due to Mr. Myrianthopoulos. In connection with the termination of
Mr. Myrianthopoulos’ employment agreement, we accelerated the vesting of options to purchase 53,908 shares of common stock and Mr. Myrianthopoulos
forfeited  options  to  purchase  72,500  shares  of  common  stock,  resulting  in  Mr.  Myrianthopoulos  holding  vested  options  to  purchase  192,500  shares  of
common stock with expiration dates ranging from November 14, 2012 to November 30, 2021. In connection with the acceleration of vesting, the Company
recognized $68,032 of stock-based compensation expense during the year ended December 31, 2012.

As a result of the above agreements, the Company has future contractual obligations over the next five years as follows:

Year
2013
2014
2015
2016
2017
Total

Research and
Development

Property and
Other Leases    

Total

 $

 $

100,000 
100,000 
75,000 
75,000 
75,000 
425,000 

 $

 $

105,000 
101,200 
25,000 
- 
- 
231,200 

 $

 $

205,000 
201,200 
100,000 
75,000 
75,000 
656,200 

F-17

 
 
 
 
   
 
  
  
  
  
  
  
  
  
  
  
  
  
 
 
Note 9. Operating Segments

The  Company  maintains  two  active  operating  segments:  BioTherapeutics  and  Vaccines/BioDefense.  Each  segment  includes  an  element  of  overhead  costs
specifically associated with its operations, with its corporate shared services group responsible for support functions generic to both operating segments.

Revenues
Vaccines/BioDefense
BioTherapeutics 1
                       Total

Loss from Operations
Vaccines/BioDefense
BioTherapeutics
Corporate
                       Total

Amortization and Depreciation Expense
Vaccines/BioDefense
BioTherapeutics
Corporate
                       Total

Interest Income 
Corporate 

Stock-Based Compensation
Vaccines/BioDefense
BioTherapeutics 
Corporate 
                       Total 

Identifiable Assets
Vaccines/BioDefense
BioTherapeutics
Corporate
                       Total

1 BioTherapeutics revenues for 2011 includes the receipt of a $5 million licensing fee from Sigma-Tau in July 2011.

F-18

For the Year Ended December
31,

2012

2011

 $

 $

 $

 $

 $

 $

 $

 $

 $

 $

 $

2,919,677 
224,943 
3,144,620 

 $

 $

2,010,234 
5,652,588 
7,662,822 

(33,636)  $
(2,203,721)   
(2,453,311)   
(4,690,668)  $

(154,395)
(1,278,156)
(1,527,644)
(2,960,195)

38,589 
190,003 
2,038 
230,630 

 $

 $

42,640 
181,213 
2,174 
226,027 

6,202 

 $

7,444 

44,484 
84,020 
333,666 
462,170 

 $

 $

78,622 
426,666 
210,517 
715,805 

As of December 31,

 2012

 2011

628,494 
566,111 
3,510,499 
4,705,104 

 $

 $

689,266 
753,767 
6,780,625 
8,223,658 

 
   
 
   
 
 
 
 
  
 
  
  
  
 
   
  
  
  
   
  
  
  
  
  
 
   
  
  
  
   
  
  
  
  
  
  
  
 
   
  
  
  
   
  
  
  
    
  
  
  
   
  
  
  
  
  
  
  
 
   
 
 
 
 
 
 
 
 
 
  
  
  
  
  
  
  
  
 
 
The Board of Directors and Shareholders,

REPORT OF INDEPENDENT REGISTERED PUBLIC ACCOUNTING FIRM

We have audited the accompanying consolidated balance sheets of Soligenix, Inc. and subsidiaries (the "Company") as of December 31, 2012 and 2011, and
the related consolidated statements of operations, changes in shareholders' equity, and cash flows for each of the years in the two-year period ended December
31,  2012.  The  financial  statements  are  the  responsibility  of  the  Company's  management.  Our  responsibility  is  to  express  an  opinion  on  these  financial
statements based on our audits.

We conducted our audits in accordance with the standards of the Public Company Accounting Oversight Board (United States). Those standards require that
we plan and perform the audit to obtain reasonable assurance about whether the financial statements are free of material misstatement. The Company is not
required  to  have,  nor  were  we  engaged  to  perform,  an  audit  of  its  internal  control  over  financial  reporting.  Our  audits  included  consideration  of  internal
control over financial reporting as a basis for designing audit procedures that are appropriate in the circumstances, but not for the purpose of expressing an
opinion  on  the  effectiveness  of  the  Company's  internal  control  over  financial  reporting,  Accordingly,  we  express  no  such  opinion.  An  audit  includes
examining,  on  a  test  basis,  evidence  supporting  the  amounts  and  disclosures  in  the  financial  statements.  An  audit  also  includes  assessing  the  accounting
principles used and significant estimates made by management, as well as evaluating the overall financial statement presentation. We believe that our audits
provide a reasonable basis for our opinion.

In  our  opinion,  the  financial  statements  referred  to  above  present  fairly,  in  all  material  respects,  the  consolidated  financial  position  of  Soligenix,  Inc,  and
subsidiaries as of December 31, 2012 and 2011, and the consolidated results of their operations and their cash flows for each of the years in the two-year
period ended December 31, 2012, in conformity with accounting principles generally accepted in the United States of America.

/s/ EisnerAmper LLP

Jenkintown, PA
February 25, 2013

F-19

 
 
 
 
 
 
 
 
CONSENT OF INDEPENDENT REGISTERED PUBLIC ACCOUNTING FIRM

Exhibit 23.1

We  consent  to  the  incorporation  by  reference  in  the  Registration  Statements  of  Soligenix,  Inc.  and  subsidiaries  on  Form  S-3  (Nos.  333-162375  and  333-
167792)  and  Form  S-8  (Nos,  333-157322,  333-149239,  333-162375,  and  333-167792)  of  our  report  dated  February  25,  2013,  on  our  audits  of  the
consolidated financial statements as of December 31, 2012 and 2011 and for each of the years in the two-year period ended December 31, 2012, which report
is included in this Annual Report on Form 10-K.

/s/ EisnerAmper LLP

Jenkintown, Pennsylvania
February 25, 2013

 
 
 
 
 
 
 
CERTIFICATION PURSUANT TO RULE 13a-14(a)/15d-14(a)
OF THE SECURITIES EXCHANGE ACT OF 1934

I, Christopher J. Schaber, Ph.D., certify that:

1.  I have reviewed this Form 10-K of the Soligenix, Inc. for the fiscal year ended December 31, 2012;

EXHIBIT 31.1

2.  Based on my knowledge, this report does not contain any untrue statement of a material fact or omit to state a material fact necessary to make the
statements made, in light of the circumstances under which such statements were made, not misleading with respect to the period covered by this
report;

3.  Based on my knowledge, the financial statements, and other financial information included in this report, fairly present in all material respects the

financial condition, results of operations and cash flows of the registrant as of, and for, the periods presented in this report;

4.  The  registrant’s  other  certifying  officer  and  I  are  responsible  for  establishing  and  maintaining  disclosure  controls  and  procedures  (as  defined  in
Exchange Act Rules 13a-15(e) and 15d-15(e)) and internal control over financial reporting (as defined in Exchange Act Rules 13a-15(f) and 15d-
15(f)) for the registrant and have:

a.  Designed such disclosure controls and procedures, or caused such disclosure controls and procedures to be designed under our supervision,
to ensure that material information relating to the registrant, including its consolidated subsidiaries, is made known to us by others within
those entities, particularly during the period in which this report is being prepared;

b.  Designed such internal control over financial reporting, or caused such internal control over financial reporting to be designed under our
supervision, to provide reasonable assurance regarding the reliability of financial reporting and the preparation of financial statements for
external purposes in accordance with generally accepted accounting principles;

c.  Evaluated  the  effectiveness  of  the  registrant’s  disclosure  controls  and  procedures  and  presented  in  this  report  our  conclusions  about  the
effectiveness of the disclosure controls and procedures, as of the end of the period covered by this report based on such evaluation; and

d.  Disclosed  in  this  report  any  change  in  the  registrant’s  internal  control  over  financial  reporting  that  occurred  during  the  registrant’s  most
recent fiscal quarter (the registrant’s fourth fiscal quarter in the case of an annual report) that has materially affected, or is reasonably likely
to materially affect, the registrant’s internal control over financial reporting; and

5.  The registrant’s other certifying officer and I have disclosed, based on our most recent evaluation of internal control over financial reporting, to the

registrant’s auditors and the audit committee of the registrant’s board of directors (or persons performing the equivalent functions):

a.  All  significant  deficiencies  and  material  weaknesses  in  the  design  or  operation  of  internal  control  over  financial  reporting  which  are

reasonably likely to adversely affect the registrant’s ability to record, process, summarize and report financial information; and

b.  Any fraud, whether or not material, that involves management or other employees who have a significant role in the registrant’s internal

control over financial reporting.

February 26, 2013

/s/ Christopher J. Schaber
Christopher J. Schaber, Ph.D.
President and Chief Executive Officer
(Principal Executive Officer)

 
 
 
 
 
 
CERTIFICATION PURSUANT TO RULE 13a-14(a)/15d-14(a)
OF THE SECURITIES EXCHANGE ACT OF 1934

I, Joseph M. Warusz, certify that:

1.  I have reviewed this Form 10-K of the Soligenix, Inc. for the fiscal year ended December 31, 2012;

EXHIBIT 31.2

2.  Based on my knowledge, this report does not contain any untrue statement of a material fact or omit to state a material fact necessary to make the
statements made, in light of the circumstances under which such statements were made, not misleading with respect to the period covered by this
report;

3.  Based on my knowledge, the financial statements, and other financial information included in this report, fairly present in all material respects the

financial condition, results of operations and cash flows of the registrant as of, and for, the periods presented in this report;

4.  The  registrant’s  other  certifying  officer  and  I  are  responsible  for  establishing  and  maintaining  disclosure  controls  and  procedures  (as  defined  in
Exchange Act Rules 13a-15(e) and 15d-15(e)) and internal control over financial reporting (as defined in Exchange Act Rules 13a-15(f) and 15d-
15(f)) for the registrant and have:

a.  Designed such disclosure controls and procedures, or caused such disclosure controls and procedures to be designed under our supervision,
to ensure that material information relating to the registrant, including its consolidated subsidiaries, is made known to us by others within
those entities, particularly during the period in which this report is being prepared;

b.  Designed such internal control over financial reporting, or caused such internal control over financial reporting to be designed under our
supervision, to provide reasonable assurance regarding the reliability of financial reporting and the preparation of financial statements for
external purposes in accordance with generally accepted accounting principles;

c.  Evaluated  the  effectiveness  of  the  registrant’s  disclosure  controls  and  procedures  and  presented  in  this  report  our  conclusions  about  the
effectiveness of the disclosure controls and procedures, as of the end of the period covered by this report based on such evaluation; and

d.  Disclosed  in  this  report  any  change  in  the  registrant’s  internal  control  over  financial  reporting  that  occurred  during  the  registrant’s  most
recent fiscal quarter (the registrant’s fourth fiscal quarter in the case of an annual report) that has materially affected, or is reasonably likely
to materially affect, the registrant’s internal control over financial reporting; and

5.  The registrant’s other certifying officer and I have disclosed, based on our most recent evaluation of internal control over financial reporting, to the

registrant’s auditors and the audit committee of the registrant’s board of directors (or persons performing the equivalent functions):

a.  All  significant  deficiencies  and  material  weaknesses  in  the  design  or  operation  of  internal  control  over  financial  reporting  which  are

reasonably likely to adversely affect the registrant’s ability to record, process, summarize and report financial information; and

b.  Any fraud, whether or not material, that involves management or other employees who have a significant role in the registrant’s internal

control over financial reporting.

February 26, 2013

/s/ Joseph M. Warusz
Joseph M. Warusz, CPA
Vice Presient of Finance,  Acting Chief Financial Officer
(Principal Financial Officer)

 
 
 
 
 
CERTIFICATION PURSUANT TO 18 U.S.C. SECTION 1350, AS ADOPTED
PURSUANT TO SECTION 906 OF THE SARBANES-OXLEY ACT OF 2002

EXHIBIT 32.1

In connection with this Form 10-K of Soligenix, Inc. (the “Company”) for the fiscal year ended December 31, 2012, as filed with the Securities and Exchange
Commission on the date hereof (the “Report”), the undersigned hereby certifies, pursuant to 18 U.S.C. Section 1350, that:

1.  The Report fully complies with the requirements of Section 13(a) or 15(d) of the Securities Exchange Act of 1934; and

2.  The information contained in the Report fairly presents, in all material respects, the financial condition and results of operations of the Company.

February 26, 2013

/s/ Christopher J. Schaber
Christopher J. Schaber, Ph.D.
President and Chief Executive Officer
(Principal Executive Officer)

 
 
 
 
 
CERTIFICATION PURSUANT TO 18 U.S.C. SECTION 1350, AS ADOPTED
PURSUANT TO SECTION 906 OF THE SARBANES-OXLEY ACT OF 2002

EXHIBIT 32.2

In connection with this Form 10-K of Soligenix, Inc. (the “Company”) for the fiscal year ended December 31, 2012, as filed with the Securities and Exchange
Commission on the date hereof (the “Report”), the undersigned hereby certifies, pursuant to 18 U.S.C. Section 1350, that:

1.  The Report fully complies with the requirements of Section 13(a) or 15(d) of the Securities Exchange Act of 1934; and

2.  The information contained in the Report fairly presents, in all material respects, the financial condition and results of operations of the Company.

February 26, 2013

/s/ Joseph M. Warusz
Joseph M. Warusz, CPA
Vice Presient of Finance, Acting Chief Financial Officer
(Principal Financial Officer)